Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008458 | XP_013463754.1 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.20e-92 | 276 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008458 | sp|Q6ASS2|LOL3_ORYSJ | 57.639 | 144 | 59 | 2 | 1 | 144 | 1 | 142 | 4.04e-49 | 159 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008458 | A0A072V6U7 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 5.73e-93 | 276 |
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG000023 | MsaG008458 | 0.807928 | 6.765676e-50 | 1.099158e-47 |
MsaG000049 | MsaG008458 | 0.816433 | 9.622564e-52 | 1.929009e-49 |
MsaG000137 | MsaG008458 | 0.841124 | 1.065323e-57 | 4.308522e-55 |
MsaG000286 | MsaG008458 | 0.831890 | 2.332312e-55 | 7.128887e-53 |
MsaG000377 | MsaG008458 | 0.815625 | 1.455438e-51 | 2.858362e-49 |
MsaG000545 | MsaG008458 | 0.856196 | 7.348002e-62 | 4.957869e-59 |
MsaG000570 | MsaG008458 | 0.822273 | 4.558025e-53 | 1.064772e-50 |
MsaG000793 | MsaG008458 | 0.863781 | 3.875792e-64 | 3.488278e-61 |
MsaG000801 | MsaG008458 | 0.800083 | 2.843947e-48 | 3.852374e-46 |
MsaG000944 | MsaG008458 | 0.854104 | 2.962029e-61 | 1.853357e-58 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008458 | MtrunA17_Chr2g0303181 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.10e-96 | 276 |
MsaG008458 | MtrunA17_Chr8g0381011 | 69.014 | 142 | 41 | 1 | 1 | 142 | 1 | 139 | 1.40e-66 | 199 |
MsaG008458 | MtrunA17_Chr4g0054701 | 58.621 | 116 | 45 | 1 | 2 | 117 | 31 | 143 | 2.39e-46 | 147 |
MsaG008458 | MtrunA17_Chr4g0047341 | 44.737 | 76 | 42 | 0 | 44 | 119 | 40 | 115 | 5.51e-22 | 85.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008458 | AT4G20380.2 | 58.571 | 140 | 48 | 3 | 1 | 131 | 6 | 144 | 2.38e-48 | 154 |
MsaG008458 | AT4G20380.7 | 58.571 | 140 | 48 | 3 | 1 | 131 | 6 | 144 | 2.38e-48 | 154 |
MsaG008458 | AT4G20380.6 | 58.571 | 140 | 48 | 3 | 1 | 131 | 1 | 139 | 3.86e-48 | 153 |
MsaG008458 | AT4G20380.3 | 58.571 | 140 | 48 | 3 | 1 | 131 | 1 | 139 | 3.86e-48 | 153 |
MsaG008458 | AT4G20380.4 | 58.571 | 140 | 48 | 3 | 1 | 131 | 1 | 139 | 3.86e-48 | 153 |
MsaG008458 | AT4G20380.1 | 58.571 | 140 | 48 | 3 | 1 | 131 | 1 | 139 | 3.86e-48 | 153 |
MsaG008458 | AT4G20380.5 | 58.571 | 140 | 48 | 3 | 1 | 131 | 1 | 139 | 3.86e-48 | 153 |
MsaG008458 | AT1G32540.1 | 60.177 | 113 | 42 | 2 | 2 | 114 | 65 | 174 | 1.91e-45 | 147 |
MsaG008458 | AT1G32540.3 | 58.772 | 114 | 44 | 1 | 2 | 115 | 32 | 142 | 5.01e-45 | 144 |
MsaG008458 | AT1G32540.2 | 58.772 | 114 | 44 | 1 | 2 | 115 | 32 | 142 | 5.01e-45 | 144 |
Find 38 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAACATTGCTTGCTCCTCTA+GGG | 0.540478 | 2:-35555739 | None:intergenic |
AAATGAACCATATCCGTTGT+GGG | 0.521367 | 2:+35559125 | MsaT008458.1:CDS |
AACACTATAAATCTTGTGCC+AGG | 0.563885 | 2:+35556926 | MsaT008458.1:CDS |
AACATCCTGCTTTACCCTAG+AGG | 0.636037 | 2:+35555725 | MsaT008458.1:CDS |
AAGATACCAGGAGGAAGAAC+AGG | 0.433787 | 2:-35555797 | None:intergenic |
AAGATTTATAGTGTTACAGC+AGG | 0.559794 | 2:-35556918 | None:intergenic |
ACAACACTCATGTATCCTCA+TGG | 0.578970 | 2:+35559157 | MsaT008458.1:CDS |
ACATTATGTGTACTGGGTGT+AGG | 0.596546 | 2:+35555702 | MsaT008458.1:CDS |
ACATTGCTAATGCACGCACG+TGG | 0.683036 | 2:+35556875 | MsaT008458.1:CDS |
AGAAGATACCGTTTCGGAGC+TGG | 0.444161 | 2:-35559927 | None:intergenic |
CRISPR-GE
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 35555692 | 35559970 | 35555692 | ID=MsaG008458 |
Chr2 | mRNA | 35555692 | 35559970 | 35555692 | ID=MsaT008458.1;Parent=MsaG008458 |
Chr2 | exon | 35555692 | 35555812 | 35555692 | ID=MsaT008458.1.exon1;Parent=MsaT008458.1 |
Chr2 | CDS | 35555692 | 35555812 | 35555692 | ID=cds.MsaT008458.1;Parent=MsaT008458.1 |
Chr2 | exon | 35556837 | 35556947 | 35556837 | ID=MsaT008458.1.exon2;Parent=MsaT008458.1 |
Chr2 | CDS | 35556837 | 35556947 | 35556837 | ID=cds.MsaT008458.1;Parent=MsaT008458.1 |
Chr2 | exon | 35559116 | 35559228 | 35559116 | ID=MsaT008458.1.exon3;Parent=MsaT008458.1 |
Chr2 | CDS | 35559116 | 35559228 | 35559116 | ID=cds.MsaT008458.1;Parent=MsaT008458.1 |
Chr2 | exon | 35559878 | 35559970 | 35559878 | ID=MsaT008458.1.exon4;Parent=MsaT008458.1 |
Chr2 | CDS | 35559878 | 35559970 | 35559878 | ID=cds.MsaT008458.1;Parent=MsaT008458.1 |
Gene Sequence |
>MsaT008458.1 ATGCGGAGCCACATTATGTGTACTGGGTGTAGGAACATCCTGCTTTACCCTAGAGGAGCAAGCAATGTTTGCTGTGCAGTGTGCAGCACAATTACCCCTGTTATTCCTGTTCTTCCTCCTGGAATGGAAATGTCACAACTTTATTGTGGAGGTTGTAGAACATTGCTAATGCACGCACGTGGAGCTACTACCGTGAGATGTTCCTGCTGTAACACTATAAATCTTGTGCCAGATTCTAATCAAATGAACCATATCCGTTGTGGGAACTGCCGGACAACACTCATGTATCCTCATGGAGCTCCTTCAGTCAAATGTGCAGTTTGTCACTATATTACTAATGTCGATATGACCAATGGAAGGCCGCCAACTCCTGTACTGACACCTAATGAAACAACCAGCTCCGAAACGGTATCTTCTACTGCATCACTATACTTTTGA |
Protein sequence |
>MsaT008458.1 MRSHIMCTGCRNILLYPRGASNVCCAVCSTITPVIPVLPPGMEMSQLYCGGCRTLLMHARGATTVRCSCCNTINLVPDSNQMNHIRCGNCRTTLMYPHGAPSVKCAVCHYITNVDMTNGRPPTPVLTPNETTSSETVSSTASLYF* |