AlfalfaGEDB | MsaG008525

M. sativa ssp. caerulea / MsaG008525

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009268 GO:0009628 GO:0009889 GO:0010035 GO:0010038 GO:0010044 GO:0010447 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008525	RHN42912.1	94.077	287	16	1	1	286	27	313	0.0	570

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008525	sp\|Q943I6\|STOP1_ORYSJ	51.759	199	92	3	85	281	268	464	1.28e-65	216

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008525	A0A396GP78	94.077	287	16	1	1	286	27	313	0.0	570

TFs/TRs:

Gene ID	Type	Classification
MsaG008525	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000080	MsaG008525	0.832215	1.940492e-55	5.986983e-53
MsaG000180	MsaG008525	0.809695	2.846605e-50	4.825451e-48
MsaG000236	MsaG008525	0.810820	1.632135e-50	2.843524e-48
MsaG000252	MsaG008525	0.818135	4.001732e-52	8.381663e-50
MsaG000458	MsaG008525	0.809136	3.745906e-50	6.265081e-48
MsaG000464	MsaG008525	0.812690	6.422834e-51	1.171726e-48
MsaG000689	MsaG008525	0.820266	1.316484e-52	2.915997e-50
MsaG000687	MsaG008525	0.820212	1.354103e-52	2.995085e-50
MsaG000707	MsaG008525	0.801483	1.477404e-48	2.065562e-46
MsaG000810	MsaG008525	0.818204	3.861361e-52	8.102146e-50
MsaG000888	MsaG008525	0.822763	3.509938e-53	8.308884e-51
MsaG000941	MsaG008525	0.800235	2.649391e-48	3.601149e-46
MsaG001029	MsaG008525	0.818777	2.866255e-52	6.104227e-50
MsaG001001	MsaG008525	0.837711	8.121136e-57	2.952089e-54
MsaG001199	MsaG008525	0.802024	1.145823e-48	1.621770e-46
MsaG001432	MsaG008525	0.814158	3.066538e-51	5.803556e-49
MsaG001479	MsaG008525	0.832881	1.329439e-55	4.181976e-53
MsaG002027	MsaG008525	0.846794	3.272860e-59	1.591638e-56
MsaG002273	MsaG008525	0.812233	8.075872e-51	1.456557e-48
MsaG002601	MsaG008525	0.804562	3.435615e-49	5.155950e-47
MsaG002911	MsaG008525	0.813206	4.956758e-51	9.159901e-49
MsaG003192	MsaG008525	0.831521	2.872928e-55	8.686599e-53
MsaG003485	MsaG008525	0.815626	1.454489e-51	2.856587e-49
MsaG003679	MsaG008525	0.844096	1.746666e-58	7.769310e-56
MsaG003683	MsaG008525	0.806649	1.259020e-49	1.984083e-47
MsaG003998	MsaG008525	0.844294	1.546342e-58	6.923002e-56
MsaG003929	MsaG008525	0.830224	5.958044e-55	1.735346e-52
MsaG004012	MsaG008525	0.829000	1.178551e-54	3.314488e-52
MsaG004225	MsaG008525	0.844883	1.074745e-58	4.906518e-56
MsaG004185	MsaG008525	0.848651	1.013975e-59	5.248698e-57
MsaG004401	MsaG008525	0.813296	4.738218e-51	8.775278e-49
MsaG004479	MsaG008525	0.843659	2.283916e-58	1.001672e-55
MsaG004648	MsaG008525	0.841207	1.013082e-57	4.107939e-55
MsaG004760	MsaG008525	0.802391	9.633158e-49	1.375032e-46
MsaG004976	MsaG008525	0.801486	1.475184e-48	2.062614e-46
MsaG004989	MsaG008525	0.806659	1.252810e-49	1.974764e-47
MsaG005074	MsaG008525	0.821239	7.882882e-53	1.791548e-50
MsaG005334	MsaG008525	0.800296	2.574718e-48	3.504451e-46
MsaG005354	MsaG008525	0.816909	7.538344e-52	1.529810e-49
MsaG005593	MsaG008525	0.824154	1.665599e-53	4.094117e-51
MsaG005683	MsaG008525	0.815038	1.962205e-51	3.796711e-49
MsaG005774	MsaG008525	0.813890	3.511944e-51	6.602137e-49
MsaG005809	MsaG008525	0.841454	8.731233e-58	3.568234e-55
MsaG005813	MsaG008525	0.805445	2.250517e-49	3.447308e-47
MsaG005969	MsaG008525	0.835062	3.803458e-56	1.276417e-53
MsaG006044	MsaG008525	0.803360	6.091053e-49	8.889963e-47
MsaG005960	MsaG008525	0.819345	2.132569e-52	4.610159e-50
MsaG006133	MsaG008525	0.810986	1.503048e-50	2.629244e-48
MsaG006255	MsaG008525	0.814774	2.244443e-51	4.314078e-49
MsaG006274	MsaG008525	0.835547	2.873535e-56	9.784261e-54
MsaG006330	MsaG008525	0.862940	7.040461e-64	6.130120e-61
MsaG006408	MsaG008525	0.839989	2.104736e-57	8.213491e-55
MsaG006625	MsaG008525	0.823486	2.384506e-53	5.756049e-51
MsaG006639	MsaG008525	0.804653	3.289806e-49	4.947387e-47
MsaG006774	MsaG008525	0.814400	2.713696e-51	5.167155e-49
MsaG006898	MsaG008525	0.806383	1.431609e-49	2.241977e-47
MsaG006886	MsaG008525	0.811297	1.287779e-50	2.269970e-48
MsaG007000	MsaG008525	0.800644	2.189117e-48	3.003230e-46
MsaG007145	MsaG008525	0.816515	9.227354e-52	1.853650e-49
MsaG007168	MsaG008525	0.824094	1.720287e-53	4.221772e-51
MsaG007215	MsaG008525	0.860432	4.080762e-63	3.225972e-60
MsaG007722	MsaG008525	0.822939	3.194721e-53	7.598599e-51
MsaG007908	MsaG008525	0.814477	2.609751e-51	4.978756e-49
MsaG008356	MsaG008525	0.814619	2.428175e-51	4.648850e-49
MsaG008479	MsaG008525	0.813272	4.796618e-51	8.878182e-49
MsaG008525	MsaG008880	0.813638	3.987547e-51	7.448943e-49
MsaG008525	MsaG009007	0.818335	3.606384e-52	7.592664e-50
MsaG008525	MsaG009265	0.826745	4.083483e-54	1.078131e-51
MsaG008525	MsaG009477	0.844499	1.362307e-58	6.139938e-56
MsaG008525	MsaG009551	0.805050	2.719913e-49	4.128420e-47
MsaG008525	MsaG009725	0.802471	9.278306e-49	1.326784e-46
MsaG008525	MsaG009703	0.822349	4.375915e-53	1.024376e-50
MsaG008525	MsaG009787	0.823037	3.033244e-53	7.233581e-51
MsaG008525	MsaG009850	0.814812	2.201182e-51	4.234992e-49
MsaG008525	MsaG010249	0.838487	5.137097e-57	1.912771e-54
MsaG008525	MsaG010508	0.825143	9.765748e-54	2.466235e-51
MsaG008525	MsaG010664	0.825883	6.534213e-54	1.684386e-51
MsaG008525	MsaG011011	0.826903	3.744302e-54	9.929310e-52
MsaG008525	MsaG011596	0.805417	2.281022e-49	3.491715e-47
MsaG008525	MsaG011861	0.811350	1.254300e-50	2.213807e-48
MsaG008525	MsaG012020	0.827293	3.023965e-54	8.107076e-52
MsaG008525	MsaG012160	0.813461	4.360911e-51	8.110231e-49
MsaG008525	MsaG012170	0.860300	4.470503e-63	3.516756e-60
MsaG008525	MsaG014856	0.829445	9.199853e-55	2.620526e-52
MsaG008525	MsaG015081	0.802859	7.724548e-49	1.114413e-46
MsaG008525	MsaG015689	0.820075	1.454809e-52	3.206109e-50
MsaG008525	MsaG016058	0.818700	2.984845e-52	6.343821e-50
MsaG008525	MsaG016222	0.800464	2.381288e-48	3.253551e-46
MsaG008525	MsaG016293	0.817905	4.507893e-52	9.385833e-50
MsaG008525	MsaG016571	0.814969	2.032258e-51	3.925548e-49
MsaG008525	MsaG016674	0.860496	3.903848e-63	3.093582e-60
MsaG008525	MsaG016882	0.842061	6.049100e-58	2.520421e-55
MsaG008525	MsaG017191	0.819060	2.473700e-52	5.307689e-50
MsaG008525	MsaG017501	0.806015	1.710401e-49	2.655160e-47
MsaG008525	MsaG017690	0.856258	7.048709e-62	4.766969e-59
MsaG008525	MsaG018065	0.815861	1.289931e-51	2.548466e-49
MsaG008525	MsaG018123	0.816897	7.584519e-52	1.538710e-49
MsaG008525	MsaG018336	0.850900	2.402914e-60	1.343414e-57
MsaG008525	MsaG018588	0.807929	6.761589e-50	1.098520e-47
MsaG008525	MsaG018593	0.873628	2.614031e-67	3.539316e-64
MsaG008525	MsaG018648	0.830433	5.298490e-55	1.552501e-52
MsaG008525	MsaG018712	0.854314	2.578016e-61	1.625338e-58
MsaG008525	MsaG018821	0.830293	5.730438e-55	1.672382e-52
MsaG008525	MsaG018902	0.805287	2.426883e-49	3.703883e-47
MsaG008525	MsaG018961	0.881366	5.408279e-70	1.040239e-66
MsaG008525	MsaG019132	0.813089	5.258007e-51	9.688087e-49
MsaG008525	MsaG019221	0.823937	1.871950e-53	4.574348e-51
MsaG008525	MsaG019615	0.816649	8.613282e-52	1.736236e-49
MsaG008525	MsaG019862	0.828443	1.604707e-54	4.443330e-52
MsaG008525	MsaG019960	0.807762	7.334615e-50	1.186817e-47
MsaG008525	MsaG019978	0.833223	1.093705e-55	3.475469e-53
MsaG008525	MsaG020030	0.839654	2.570054e-57	9.924143e-55
MsaG008525	MsaG020024	0.802961	7.358823e-49	1.064171e-46
MsaG008525	MsaG020296	0.809400	3.291558e-50	5.540088e-48
MsaG008525	MsaG020338	0.837676	8.287567e-57	3.009424e-54
MsaG008525	MsaG020467	0.803043	7.078602e-49	1.025593e-46
MsaG008525	MsaG020486	0.846361	4.291472e-59	2.057035e-56
MsaG008525	MsaG020487	0.857007	4.256584e-62	2.957959e-59
MsaG008525	MsaG020742	0.876173	3.584722e-68	5.432117e-65
MsaG008525	MsaG020777	0.812198	8.218920e-51	1.481119e-48
MsaG008525	MsaG021049	0.818103	4.068520e-52	8.514560e-50
MsaG008525	MsaG021429	0.831883	2.342105e-55	7.157309e-53
MsaG008525	MsaG021448	0.818458	3.383926e-52	7.146987e-50
MsaG008525	MsaG021452	0.845816	6.025200e-59	2.836269e-56
MsaG008525	MsaG021553	0.800542	2.296091e-48	3.142696e-46
MsaG008525	MsaG021665	0.826811	3.937700e-54	1.041526e-51
MsaG008525	MsaG022537	0.832425	1.722181e-55	5.346065e-53
MsaG008525	MsaG022729	0.814688	2.344065e-51	4.495754e-49
MsaG008525	MsaG023677	0.852395	9.100977e-61	5.360804e-58
MsaG008525	MsaG023762	0.862892	7.282934e-64	6.329139e-61
MsaG008525	MsaG024010	0.840211	1.842799e-57	7.241293e-55
MsaG008525	MsaG024222	0.814613	2.435504e-51	4.662152e-49
MsaG008525	MsaG024387	0.816546	9.083288e-52	1.826155e-49
MsaG008525	MsaG025732	0.811320	1.273575e-50	2.246171e-48
MsaG008525	MsaG026812	0.828625	1.450387e-54	4.036534e-52
MsaG008525	MsaG026841	0.862333	1.080894e-63	9.189325e-61
MsaG008525	MsaG026844	0.822580	3.869000e-53	9.113603e-51
MsaG008525	MsaG026962	0.802124	1.093027e-48	1.550589e-46
MsaG008525	MsaG027777	0.831578	2.782231e-55	8.426473e-53
MsaG008525	MsaG028064	0.811461	1.186813e-50	2.100418e-48
MsaG008525	MsaG028116	0.833967	7.147413e-56	2.321240e-53
MsaG008525	MsaG028256	0.808924	4.156663e-50	6.916686e-48
MsaG008525	MsaG028804	0.816271	1.045828e-51	2.087944e-49
MsaG008525	MsaG029117	0.824308	1.533640e-53	3.785758e-51
MsaG008525	MsaG029335	0.845264	8.488502e-59	3.923263e-56
MsaG008525	MsaG029461	0.810046	2.393944e-50	4.092683e-48
MsaG008525	MsaG029483	0.846615	3.660754e-59	1.769546e-56
MsaG008525	MsaG029655	0.832367	1.780169e-55	5.516580e-53
MsaG008525	MsaG029704	0.814406	2.704928e-51	5.151282e-49
MsaG008525	MsaG030045	0.821634	6.397509e-53	1.469241e-50
MsaG008525	MsaG030359	0.819798	1.682314e-52	3.680121e-50
MsaG008525	MsaG030757	0.835192	3.529534e-56	1.189024e-53
MsaG008525	MsaG031167	0.800086	2.840559e-48	3.848003e-46
MsaG008525	MsaG031199	0.817412	5.816345e-52	1.195769e-49
MsaG008525	MsaG031371	0.817224	6.409669e-52	1.311411e-49
MsaG008525	MsaG031622	0.823209	2.766055e-53	6.627063e-51
MsaG008525	MsaG031652	0.801733	1.313656e-48	1.847127e-46
MsaG008525	MsaG032221	0.801271	1.632013e-48	2.270753e-46
MsaG008525	MsaG032228	0.816718	8.313379e-52	1.678808e-49
MsaG008525	MsaG032928	0.808670	4.709203e-50	7.788401e-48
MsaG008525	MsaG033682	0.830646	4.701070e-55	1.385807e-52
MsaG008525	MsaG033700	0.810015	2.430339e-50	4.151836e-48
MsaG008525	MsaG033815	0.813486	4.305135e-51	8.011549e-49
MsaG008525	MsaG033811	0.816913	7.520711e-52	1.526425e-49
MsaG008525	MsaG034046	0.834391	5.602061e-56	1.842626e-53
MsaG008525	MsaG034147	0.856240	7.135680e-62	4.822737e-59
MsaG008525	MsaG034837	0.875498	6.095466e-68	8.961870e-65
MsaG008525	MsaG035054	0.818691	2.998760e-52	6.371908e-50
MsaG008525	MsaG035529	0.862448	9.968043e-64	8.513351e-61
MsaG008525	MsaG035768	0.803347	6.128102e-49	8.941349e-47
MsaG008525	MsaG036303	0.833227	1.091315e-55	3.468277e-53
MsaG008525	MsaG036324	0.828864	1.270523e-54	3.559633e-52
MsaG008525	MsaG037910	0.868512	1.249586e-65	1.361404e-62
MsaG008525	MsaG039160	0.823337	2.583263e-53	6.210880e-51
MsaG008525	MsaG040425	0.809168	3.687623e-50	6.172210e-48
MsaG008525	MsaG040649	0.836821	1.368244e-56	4.840835e-54
MsaG008525	MsaG040669	0.827676	2.449932e-54	6.638977e-52
MsaG008525	MsaG041116	0.800026	2.921131e-48	3.951888e-46
MsaG008525	MsaG041271	0.805386	2.314951e-49	3.541155e-47
MsaG008525	MsaG041734	0.801528	1.446701e-48	2.024702e-46
MsaG008525	MsaG041905	0.836331	1.821490e-56	6.349985e-54
MsaG008525	MsaG041931	0.802268	1.021326e-48	1.453668e-46
MsaG008525	MsaG042898	0.807807	7.177998e-50	1.162706e-47
MsaG008525	MsaG042994	0.840520	1.531279e-57	6.076046e-55
MsaG008525	MsaG043000	0.851283	1.875891e-60	1.062629e-57
MsaG008525	MsaG043190	0.819752	1.723316e-52	3.765135e-50
MsaG008525	MsaG043808	0.819828	1.656624e-52	3.626698e-50
MsaG008525	MsaG044333	0.812957	5.617384e-51	1.031616e-48
MsaG008525	MsaG044598	0.802505	9.129597e-49	1.306540e-46
MsaG008525	MsaG044885	0.830924	4.023253e-55	1.195532e-52
MsaG008525	MsaG044889	0.841389	9.081312e-58	3.703657e-55
MsaG008525	MsaG045016	0.850726	2.688348e-60	1.493860e-57
MsaG008525	MsaG045109	0.869170	7.672022e-66	8.586539e-63
MsaG008525	MsaG045118	0.861391	2.092283e-63	1.715220e-60
MsaG008525	MsaG045412	0.851828	1.316846e-60	7.603484e-58
MsaG008525	MsaG045703	0.817164	6.609200e-52	1.350148e-49
MsaG008525	MsaG045974	0.844471	1.386116e-58	6.241492e-56
MsaG008525	MsaG046126	0.908595	3.455307e-81	2.982875e-77
MsaG008525	MsaG046226	0.813406	4.483201e-51	8.326308e-49
MsaG008525	MsaG046251	0.809719	2.812771e-50	4.770902e-48
MsaG008525	MsaG046266	0.845510	7.290264e-59	3.396948e-56
MsaG008525	MsaG046313	0.821998	5.274237e-53	1.223056e-50
MsaG008525	MsaG046488	0.837565	8.847117e-57	3.201797e-54
MsaG008525	MsaG046703	0.803687	5.214602e-49	7.668538e-47
MsaG008525	MsaG046733	0.822506	4.024772e-53	9.461510e-51
MsaG008525	MsaG046802	0.820543	1.137971e-52	2.539053e-50
MsaG008525	MsaG046861	0.800175	2.724622e-48	3.698317e-46
MsaG008525	MsaG046978	0.826091	5.836129e-54	1.513125e-51
MsaG008525	MsaG046999	0.800737	2.095728e-48	2.881136e-46
MsaG008525	MsaG047194	0.814552	2.511788e-51	4.800906e-49
MsaG008525	MsaG000837	0.837167	1.117850e-56	3.996515e-54
MsaG008525	MsaG002984	0.869425	6.342669e-66	7.175142e-63
MsaG008525	MsaG002433	0.810402	2.007281e-50	3.461737e-48
MsaG008525	MsaG001106	0.808735	4.560213e-50	7.553892e-48
MsaG008525	MsaG003742	0.801139	1.735871e-48	2.408129e-46
MsaG008525	MsaG002745	0.804628	3.328215e-49	5.002295e-47
MsaG008525	MsaG001372	0.832104	2.066655e-55	6.356257e-53
MsaG008525	MsaG001715	0.825741	7.060870e-54	1.812880e-51
MsaG008525	MsaG008983	0.806429	1.400149e-49	2.195143e-47
MsaG008525	MsaG008854	0.859467	7.947566e-63	6.055332e-60
MsaG008525	MsaG007366	0.803623	5.375242e-49	7.892953e-47
MsaG008525	MsaG014863	0.802380	9.685639e-49	1.382155e-46
MsaG008525	MsaG015244	0.844006	1.845346e-58	8.183254e-56
MsaG008525	MsaG013378	0.845296	8.322089e-59	3.850471e-56
MsaG008525	MsaG012029	0.821212	7.995830e-53	1.815919e-50
MsaG008525	MsaG013406	0.845350	8.051851e-59	3.732277e-56
MsaG008525	MsaG012523	0.817195	6.505604e-52	1.330024e-49
MsaG008525	MsaG014449	0.809275	3.499807e-50	5.872726e-48
MsaG008525	MsaG013967	0.808284	5.686439e-50	9.317416e-48
MsaG008525	MsaG014180	0.842755	3.965740e-58	1.689613e-55
MsaG008525	MsaG014177	0.862090	1.282134e-63	1.079764e-60
MsaG008525	MsaG013405	0.802629	8.609423e-49	1.235625e-46
MsaG008525	MsaG013372	0.834307	5.878170e-56	1.928586e-53
MsaG008525	MsaG015300	0.831742	2.536974e-55	7.720935e-53
MsaG008525	MsaG011352	0.838980	3.837960e-57	1.451225e-54
MsaG008525	MsaG018001	0.823786	2.029839e-53	4.940102e-51
MsaG008525	MsaG028139	0.849352	6.487789e-60	3.439572e-57
MsaG008525	MsaG027479	0.810540	1.874808e-50	3.244143e-48
MsaG008525	MsaG028732	0.807504	8.317613e-50	1.337547e-47
MsaG008525	MsaG032663	0.811834	9.854855e-51	1.760160e-48
MsaG008525	MsaG031660	0.810586	1.832600e-50	3.174597e-48
MsaG008525	MsaG032261	0.802343	9.857430e-49	1.405491e-46
MsaG008525	MsaG033233	0.803486	5.736008e-49	8.396224e-47
MsaG008525	MsaG032342	0.817913	4.490281e-52	9.351124e-50
MsaG008525	MsaG030863	0.824453	1.417870e-53	3.513832e-51
MsaG008525	MsaG030190	0.811805	1.000036e-50	1.784861e-48
MsaG008525	MsaG031311	0.846516	3.893119e-59	1.875720e-56
MsaG008525	MsaG031188	0.823477	2.396636e-53	5.783763e-51
MsaG008525	MsaG031025	0.852462	8.710849e-61	5.142631e-58
MsaG008525	MsaG033504	0.810998	1.494494e-50	2.614986e-48
MsaG008525	MsaG029976	0.827758	2.341678e-54	6.360338e-52
MsaG008525	MsaG030458	0.821081	8.571190e-53	1.939839e-50
MsaG008525	MsaG035574	0.827858	2.216600e-54	6.037382e-52
MsaG008525	MsaG036784	0.881509	4.804782e-70	9.304993e-67
MsaG008525	MsaG036873	0.837932	7.130444e-57	2.609681e-54
MsaG008525	MsaG038711	0.822641	3.747154e-53	8.840879e-51
MsaG008525	MsaG036199	0.810497	1.915639e-50	3.311250e-48
MsaG008525	MsaG036671	0.816308	1.026062e-51	2.050419e-49
MsaG008525	MsaG035918	0.817694	5.027181e-52	1.041007e-49
MsaG008525	MsaG036542	0.808095	6.235513e-50	1.017076e-47
MsaG008525	MsaG042698	0.873967	2.011896e-67	2.765526e-64
MsaG008525	MsaG043461	0.801463	1.491653e-48	2.084545e-46
MsaG008525	MsaG042299	0.831681	2.625211e-55	7.975341e-53

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008525	MtrunA17_Chr8g0382121	94.077	287	16	1	1	286	27	313	0.0	570
MsaG008525	MtrunA17_Chr3g0123941	51.737	259	108	5	1	256	50	294	9.31e-83	252
MsaG008525	MtrunA17_Chr1g0200421	55.491	173	72	3	84	253	236	406	1.18e-64	210
MsaG008525	MtrunA17_Chr2g0320341	54.601	163	69	2	83	241	228	389	1.20e-62	202
MsaG008525	MtrunA17_Chr5g0422571	40.690	145	80	5	101	243	116	256	6.78e-24	98.2
MsaG008525	MtrunA17_Chr8g0373541	34.682	173	98	6	80	252	43	200	1.95e-21	94.0
MsaG008525	MtrunA17_Chr7g0263941	36.486	148	83	5	83	230	47	183	2.08e-21	93.2
MsaG008525	MtrunA17_Chr8g0342421	33.333	168	97	6	83	250	75	227	2.26e-21	93.6
MsaG008525	MtrunA17_Chr2g0326381	30.612	196	121	6	83	278	45	225	3.92e-21	92.4
MsaG008525	MtrunA17_Chr4g0029521	33.140	172	100	6	83	254	51	207	7.75e-21	92.0
MsaG008525	MtrunA17_Chr2g0321291	38.571	140	81	4	101	239	148	283	8.50e-21	90.1
MsaG008525	MtrunA17_Chr1g0198651	36.986	146	86	5	101	243	117	259	9.50e-21	89.7
MsaG008525	MtrunA17_Chr4g0053341	37.342	158	91	6	92	246	79	231	1.21e-20	88.2
MsaG008525	MtrunA17_Chr1g0191991	35.811	148	84	5	83	230	76	212	2.09e-20	90.9
MsaG008525	MtrunA17_Chr7g0268961	35.811	148	84	5	83	230	35	171	2.30e-20	90.5
MsaG008525	MtrunA17_Chr4g0026521	34.286	175	101	7	91	256	122	291	3.03e-20	88.2
MsaG008525	MtrunA17_Chr1g0181381	34.459	148	87	4	83	230	51	188	4.16e-20	89.7
MsaG008525	MtrunA17_Chr8g0352011	32.749	171	110	4	65	234	144	310	4.70e-20	88.6
MsaG008525	MtrunA17_Chr4g0040571	34.459	148	86	5	83	230	52	188	5.63e-20	89.4
MsaG008525	MtrunA17_Chr2g0330171	31.792	173	103	6	83	255	59	216	6.11e-20	89.4
MsaG008525	MtrunA17_Chr1g0185121	34.459	148	87	4	83	230	53	190	2.26e-19	87.4
MsaG008525	MtrunA17_Chr2g0328921	37.671	146	84	6	101	244	153	293	2.55e-19	86.3
MsaG008525	MtrunA17_Chr3g0141431	35.526	152	87	5	83	234	35	175	2.65e-19	87.0
MsaG008525	MtrunA17_Chr1g0210821	32.026	153	93	5	78	230	52	193	4.76e-19	87.0
MsaG008525	MtrunA17_Chr1g0151351	35.484	155	89	6	77	230	47	191	6.75e-19	86.3
MsaG008525	MtrunA17_Chr7g0258011	37.143	140	81	6	101	238	191	325	1.19e-18	84.7
MsaG008525	MtrunA17_Chr1g0199101	33.333	153	91	5	78	230	55	196	3.54e-18	84.3
MsaG008525	MtrunA17_Chr2g0324991	35.417	144	82	5	83	226	5	137	5.61e-18	79.0
MsaG008525	MtrunA17_Chr8g0375521	35.714	154	88	5	78	230	35	178	6.39e-18	83.2
MsaG008525	MtrunA17_Chr1g0162971	32.026	153	93	5	78	230	49	190	7.02e-18	83.2
MsaG008525	MtrunA17_Chr1g0173841	35.862	145	86	6	101	243	230	369	7.09e-18	82.8
MsaG008525	MtrunA17_Chr1g0163001	32.432	148	89	5	83	230	56	192	9.21e-18	83.2
MsaG008525	MtrunA17_Chr6g0479921	34.831	178	99	7	56	230	16	179	2.87e-17	81.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008525	AT1G34370.3	52.459	183	81	3	84	261	19	200	9.01e-65	205
MsaG008525	AT1G34370.2	52.459	183	81	3	84	261	229	410	1.58e-63	207
MsaG008525	AT1G34370.1	52.459	183	81	3	84	261	229	410	1.58e-63	207
MsaG008525	AT5G22890.1	48.768	203	99	2	52	250	170	371	1.80e-62	201
MsaG008525	AT1G08290.1	39.007	141	80	5	101	239	182	318	1.18e-21	93.2
MsaG008525	AT1G13290.1	37.415	147	87	4	101	245	103	246	2.04e-21	92.0
MsaG008525	AT5G60470.2	33.974	156	91	5	75	230	51	194	2.62e-21	93.6
MsaG008525	AT5G60470.3	33.974	156	91	5	75	230	47	190	2.88e-21	93.6
MsaG008525	AT5G66730.1	35.811	148	84	5	83	230	45	181	3.62e-21	93.2
MsaG008525	AT5G44160.1	34.459	148	86	5	83	230	50	186	4.05e-21	93.2
MsaG008525	AT5G44160.2	34.459	148	86	5	83	230	11	147	4.40e-21	92.8
MsaG008525	AT5G60470.1	33.557	149	89	4	82	230	47	185	4.60e-21	92.8
MsaG008525	AT1G51220.1	39.189	148	83	6	101	246	180	322	5.24e-21	91.7
MsaG008525	AT3G45260.2	31.395	172	104	5	83	254	52	209	5.36e-21	92.4
MsaG008525	AT3G45260.1	31.395	172	104	5	83	254	52	209	5.36e-21	92.4
MsaG008525	AT5G03150.1	35.616	146	84	4	85	230	68	203	7.20e-21	92.4
MsaG008525	AT1G03840.2	34.437	151	88	5	80	230	49	188	9.71e-21	92.0
MsaG008525	AT3G20880.1	37.107	159	93	6	101	257	258	411	2.21e-20	90.5
MsaG008525	AT1G03840.1	34.459	148	86	5	83	230	54	190	2.46e-20	90.9
MsaG008525	AT3G50700.1	35.503	169	92	7	62	230	32	183	3.61e-20	90.1
MsaG008525	AT1G55110.3	32.335	167	99	5	83	249	76	228	9.17e-20	89.0
MsaG008525	AT1G55110.1	32.335	167	99	5	83	249	76	228	9.17e-20	89.0
MsaG008525	AT1G55110.2	32.335	167	99	5	83	249	76	228	9.17e-20	89.0
MsaG008525	AT3G13810.4	34.459	148	87	4	83	230	83	220	2.88e-19	87.8
MsaG008525	AT3G13810.1	34.459	148	87	4	83	230	83	220	2.88e-19	87.8
MsaG008525	AT3G13810.5	34.459	148	87	4	83	230	78	215	3.44e-19	87.8
MsaG008525	AT3G13810.6	34.459	148	87	4	83	230	64	201	3.46e-19	87.4
MsaG008525	AT3G13810.2	34.459	148	87	4	83	230	84	221	4.21e-19	87.4
MsaG008525	AT3G13810.3	34.459	148	87	4	83	230	70	207	4.71e-19	87.0
MsaG008525	AT2G02070.2	32.026	153	93	5	78	230	60	201	6.98e-19	87.0
MsaG008525	AT2G02070.1	32.026	153	93	5	78	230	60	201	6.98e-19	87.0
MsaG008525	AT1G34790.1	35.329	167	97	8	92	252	137	298	1.02e-18	84.7
MsaG008525	AT2G02080.1	30.000	190	112	8	75	260	61	233	1.08e-18	86.3
MsaG008525	AT2G02080.4	30.000	190	112	8	75	260	61	233	1.08e-18	86.3
MsaG008525	AT2G02080.5	30.000	190	112	8	75	260	61	233	1.08e-18	86.3
MsaG008525	AT2G02080.3	30.000	190	112	8	75	260	61	233	1.08e-18	86.3
MsaG008525	AT4G02670.2	35.135	148	86	5	83	230	68	205	1.45e-18	85.5
MsaG008525	AT4G02670.1	35.135	148	86	5	83	230	66	203	1.47e-18	85.1
MsaG008525	AT1G14580.3	32.051	156	93	6	75	230	74	216	2.42e-18	85.1
MsaG008525	AT1G14580.1	32.051	156	93	6	75	230	60	202	2.46e-18	85.1
MsaG008525	AT1G14580.2	32.051	156	93	6	75	230	60	202	2.46e-18	85.1
MsaG008525	AT3G57670.1	35.862	145	86	6	101	243	219	358	8.79e-18	82.8
MsaG008525	AT2G01940.1	35.032	157	85	7	78	230	52	195	1.56e-16	79.7
MsaG008525	AT1G25250.3	34.899	149	87	5	83	230	46	185	1.79e-16	79.3
MsaG008525	AT2G02080.6	29.825	171	101	7	94	260	1	156	1.82e-16	79.3
MsaG008525	AT2G02080.2	29.825	171	101	7	94	260	1	156	1.82e-16	79.3
MsaG008525	AT1G25250.1	34.899	149	87	5	83	230	23	162	2.18e-16	78.6
MsaG008525	AT1G68130.1	34.899	149	86	5	83	230	54	192	4.38e-16	78.2
MsaG008525	AT2G01940.3	34.483	145	78	7	78	218	52	183	1.51e-13	70.9

Find 71 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTGATGATTTGGATAAATTT+TGG	0.104736	2:-36705598	MsaT008525.1:CDS
GGAGGAATTGTTATTGTTTC+TGG	0.118268	2:+36706286	None:intergenic
GGAAGGTTTCTTTGATGATT+TGG	0.263746	2:-36705609	MsaT008525.1:CDS
CATGTCATCGTCAATGTAAT+TGG	0.286361	2:+36706231	None:intergenic
TCCACTTCTGCGAGATTTGC+GGG	0.292814	2:-36706138	MsaT008525.1:CDS
TTCCTCCAACCGAGTGTTAC+TGG	0.302145	2:-36706270	MsaT008525.1:CDS
TGCGTCGAGTTCCACAATTT+TGG	0.303992	2:+36706183	None:intergenic
ATGAAGGTTGCAAACGTAAC+AGG	0.321705	2:-36705982	MsaT008525.1:CDS
GACAATGACTTCTCTTGAAA+TGG	0.326614	2:+36705912	None:intergenic
AGTGAGTCTAAGTGTTGTTT+GGG	0.344560	2:+36706376	None:intergenic
TCTAGGAAGGAGAAATTGTT+TGG	0.374626	2:-36705767	MsaT008525.1:CDS
GACGAATTGTGGAGGAGATT+TGG	0.390719	2:+36706347	None:intergenic
GAGAAGTGTGTTTGTTTGAA+TGG	0.397224	2:+36706399	None:intergenic
GAGTGAGTCTAAGTGTTGTT+TGG	0.432423	2:+36706375	None:intergenic
GACGGCGGCGCCGGCAGAAG+AGG	0.442327	2:-36705684	MsaT008525.1:CDS
TTACGTTTGCAACCTTCATA+AGG	0.442930	2:+36705986	None:intergenic
TGTGTTTGTTTGAATGGATT+GGG	0.447482	2:+36706405	None:intergenic
GGACACGTGGAGCGGTTTGA+AGG	0.462859	2:-36705746	MsaT008525.1:CDS
TTCTGCGAGATTTGCGGGAA+AGG	0.464202	2:-36706133	MsaT008525.1:CDS
TTCCACTTCTGCGAGATTTG+CGG	0.470603	2:-36706139	MsaT008525.1:CDS
GTGTGTTTGTTTGAATGGAT+TGG	0.474691	2:+36706404	None:intergenic
AATTGTGGAGGAGATTTGGT+TGG	0.477694	2:+36706351	None:intergenic
TGATTGCATAGATACGTTAC+CGG	0.493467	2:-36705630	MsaT008525.1:CDS
GGAAAAGCAAGCGCGTTTAA+CGG	0.496000	2:-36706026	MsaT008525.1:CDS
AAAATCAATGACGGCGGCGC+CGG	0.497008	2:-36705693	MsaT008525.1:CDS
TTGGAATGGTCGTTATGAGT+GGG	0.500470	2:+36706202	None:intergenic
CCCACACCTTCCTCTTCTGC+CGG	0.501400	2:+36705674	None:intergenic
GAAGTTCAATCCGTTGAAAA+CGG	0.526797	2:-36705951	MsaT008525.1:CDS
AAATCATCAAAGAAACCTTC+CGG	0.527715	2:+36705611	None:intergenic
CCGGCGGTTGTTGAAGAGAA+AGG	0.528093	2:-36705716	MsaT008525.1:CDS
TCCCGCAAATCTCGCAGAAG+TGG	0.537900	2:+36706137	None:intergenic
GTCCAGTAACACTCGGTTGG+AGG	0.539855	2:+36706268	None:intergenic
GAGTCACGTGAAACAGTGTA+GGG	0.546406	2:-36705828	MsaT008525.1:CDS
GATGATGACTTGACGAATTG+TGG	0.554147	2:+36706336	None:intergenic
TGTTATTGTTTCTGGACAAG+TGG	0.555781	2:+36706294	None:intergenic
TAACGACCATTCCAAAATTG+TGG	0.557903	2:-36706194	MsaT008525.1:CDS
CGTATGCACATGCGCGCGCA+CGG	0.560123	2:-36706088	MsaT008525.1:CDS
GGAGAAATTGTTTGGACACG+TGG	0.562238	2:-36705759	MsaT008525.1:CDS
CCGGCAGAAGAGGAAGGTGT+GGG	0.568129	2:-36705674	MsaT008525.1:CDS
CAATTACATTGACGATGACA+TGG	0.570490	2:-36706230	MsaT008525.1:CDS
CGAAAACTCACACGTGCGAT+CGG	0.572334	2:-36705889	MsaT008525.1:CDS
CTCACACGTGCGATCGGTGT+CGG	0.577837	2:-36705883	MsaT008525.1:CDS
TGCATAGATACGTTACCGGA+AGG	0.579492	2:-36705626	MsaT008525.1:CDS
CCAACCGAGTGTTACTGGAC+AGG	0.586148	2:-36706265	MsaT008525.1:CDS
GCCGGCAGAAGAGGAAGGTG+TGG	0.587117	2:-36705675	MsaT008525.1:CDS
CCTTTCTCTTCAACAACCGC+CGG	0.591632	2:+36705716	None:intergenic
TTTGGAATGGTCGTTATGAG+TGG	0.596386	2:+36706201	None:intergenic
AGAGTCACGTGAAACAGTGT+AGG	0.598901	2:-36705829	MsaT008525.1:CDS
CCTGTCCAGTAACACTCGGT+TGG	0.599661	2:+36706265	None:intergenic
GCGGCGCCGGCAGAAGAGGA+AGG	0.609998	2:-36705680	MsaT008525.1:CDS
GCGGTTTGAAGGACACTCGC+CGG	0.611639	2:-36705735	MsaT008525.1:CDS
TCCACGTGGAAGTGTTCGTG+TGG	0.623338	2:-36705800	MsaT008525.1:CDS
GCAGAAGAGGAAGGTGTGGG+TGG	0.627397	2:-36705671	MsaT008525.1:CDS
ACCACCTGTCCAGTAACACT+CGG	0.627426	2:+36706261	None:intergenic
ATGAAGCGTTACGTAGCGTG+AGG	0.636493	2:-36706048	MsaT008525.1:CDS
AATTGTGGAACTCGACGCAG+TGG	0.638379	2:-36706179	MsaT008525.1:CDS
TTTCTCCTTCCTAGAAAACG+TGG	0.641293	2:+36705775	None:intergenic
AATTGTTTGGACACGTGGAG+CGG	0.644804	2:-36705754	MsaT008525.1:CDS
GTTTGAAGGACACTCGCCGG+CGG	0.649562	2:-36705732	MsaT008525.1:CDS
ACCGAGTGTTACTGGACAGG+TGG	0.653482	2:-36706262	MsaT008525.1:CDS
ACACGTGCGATCGGTGTCGG+AGG	0.660805	2:-36705880	MsaT008525.1:CDS
AGAGAAAGGAAAATCAATGA+CGG	0.662591	2:-36705702	MsaT008525.1:CDS
TGAAGCGTTACGTAGCGTGA+GGG	0.667496	2:-36706047	MsaT008525.1:CDS
GAAAGGAAAATCAATGACGG+CGG	0.669060	2:-36705699	MsaT008525.1:CDS
GCGCGCGCATGTGCATACGT+AGG	0.669149	2:+36706092	None:intergenic
GTGAGTCTAAGTGTTGTTTG+GGG	0.679107	2:+36706377	None:intergenic
AAGCGCGTTTAACGGCGACG+CGG	0.680564	2:-36706018	MsaT008525.1:CDS
AGTGTAGGGGAGAGTCCACG+TGG	0.705085	2:-36705814	MsaT008525.1:CDS
GATGACTTGACGAATTGTGG+AGG	0.731309	2:+36706339	None:intergenic
AGTCACGTGAAACAGTGTAG+GGG	0.737402	2:-36705827	MsaT008525.1:CDS
TCCACACGAACACTTCCACG+TGG	0.747159	2:+36705799	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	36705592	36706452	36705592	ID=MsaG008525
Chr2	mRNA	36705592	36706452	36705592	ID=MsaT008525.1;Parent=MsaG008525
Chr2	exon	36705592	36706452	36705592	ID=MsaT008525.1.exon1;Parent=MsaT008525.1
Chr2	CDS	36705592	36706452	36705592	ID=cds.MsaT008525.1;Parent=MsaT008525.1

Gene Sequence

>MsaT008525.1

ATGGATTCTATTCAAAGCTTCATATCCCAATCCATTCAAACAAACACACTTCTCCCCAAACAACACTTAGACTCACTCTCCAACCAAATCTCCTCCACAATTCGTCAAGTCATCATCAACGCAACTGCTCTTCTCGCCACTTGTCCAGAAACAATAACAATTCCTCCAACCGAGTGTTACTGGACAGGTGGTGAGAAAACCAATTACATTGACGATGACATGGCAAATCCCACTCATAACGACCATTCCAAAATTGTGGAACTCGACGCAGTGGAACTGCTTGCGAAGCACTTCCACTTCTGCGAGATTTGCGGGAAAGGTTTCACGCGCGATGCAAACCTACGTATGCACATGCGCGCGCACGGAGAACAGTTCAAGACACATGAAGCGTTACGTAGCGTGAGGGAAAAGCAAGCGCGTTTAACGGCGACGCGGTTTTCTTGTCCTTATGAAGGTTGCAAACGTAACAGGTTACACAAGAAGTTCAATCCGTTGAAAACGGTGTTCTGTTTGAGAAACCATTTCAAGAGAAGTCATTGTCCGAAAACTCACACGTGCGATCGGTGTCGGAGGAAGAGTTTTGCGGTGGTGTCGGATTTGAAGAGTCACGTGAAACAGTGTAGGGGAGAGTCCACGTGGAAGTGTTCGTGTGGAACCACGTTTTCTAGGAAGGAGAAATTGTTTGGACACGTGGAGCGGTTTGAAGGACACTCGCCGGCGGTTGTTGAAGAGAAAGGAAAATCAATGACGGCGGCGCCGGCAGAAGAGGAAGGTGTGGGTGGATTTTTTACGAAGGAAAATGATTGCATAGATACGTTACCGGAAGGTTTCTTTGATGATTTGGATAAATTTTGGGTTTGA

Protein sequence

>MsaT008525.1

MDSIQSFISQSIQTNTLLPKQHLDSLSNQISSTIRQVIINATALLATCPETITIPPTECYWTGGEKTNYIDDDMANPTHNDHSKIVELDAVELLAKHFHFCEICGKGFTRDANLRMHMRAHGEQFKTHEALRSVREKQARLTATRFSCPYEGCKRNRLHKKFNPLKTVFCLRNHFKRSHCPKTHTCDRCRRKSFAVVSDLKSHVKQCRGESTWKCSCGTTFSRKEKLFGHVERFEGHSPAVVEEKGKSMTAAPAEEEGVGGFFTKENDCIDTLPEGFFDDLDKFWV*