AlfalfaGEDB | MsaG008541

M. sativa ssp. caerulea / MsaG008541

KEGG: -
GO: -
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008541	XP_003595572.1	88.194	144	17	0	1	144	1	144	3.06e-88	269

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008541	Q2HRN3	88.194	144	17	0	1	144	1	144	1.46e-88	269

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TFs/TRs:

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Gene ID	Type	Classification
MsaG008541	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000003	MsaG008541	0.843631	2.322687e-58	1.017762e-55
MsaG000030	MsaG008541	0.825349	8.737157e-54	2.219025e-51
MsaG000045	MsaG008541	0.880816	8.506055e-70	1.595216e-66
MsaG000062	MsaG008541	0.823236	2.726638e-53	6.537492e-51
MsaG000070	MsaG008541	0.826114	5.763461e-54	1.495222e-51
MsaG000083	MsaG008541	0.902718	1.695192e-78	1.018128e-74
MsaG000110	MsaG008541	0.824797	1.177817e-53	2.946334e-51
MsaG000113	MsaG008541	0.898276	1.418382e-76	6.564193e-73
MsaG000127	MsaG008541	0.863287	5.506509e-64	4.860218e-61
MsaG000128	MsaG008541	0.879463	2.570246e-69	4.525801e-66

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008541	MtrunA17_Chr2g0303981	88.194	144	17	0	1	144	1	144	2.81e-92	269
MsaG008541	MtrunA17_Chr4g0059631	41.379	232	109	6	5	213	3	230	4.53e-50	164
MsaG008541	MtrunA17_Chr4g0022641	41.048	229	115	7	1	214	1	224	2.58e-42	147
MsaG008541	MtrunA17_Chr1g0212471	48.252	143	70	2	5	144	3	144	4.75e-41	139
MsaG008541	MtrunA17_Chr6g0449851	33.333	171	106	3	5	171	3	169	9.36e-25	99.8
MsaG008541	MtrunA17_Chr6g0457851	34.810	158	98	2	5	158	13	169	5.22e-24	98.2
MsaG008541	MtrunA17_Chr1g0212151	31.319	182	114	3	5	176	3	183	3.53e-23	95.9
MsaG008541	MtrunA17_Chr6g0449861	34.028	144	90	2	5	144	11	153	3.75e-21	90.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008541	AT5G55690.1	30.625	160	96	4	1	155	1	150	5.42e-12	64.3
MsaG008541	AT5G55690.2	30.625	160	96	4	1	155	1	150	5.42e-12	64.3

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Find 41 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAATTTGCGAAGTTG+TGG	0.466478	2:-36971650	MsaT008541.1:CDS
AAAGGATCATCAGAGCTATA+TGG	0.400445	2:+36971748	None:intergenic
AAGGAATGGGCTAATCAACA+TGG	0.685475	2:-36971601	MsaT008541.1:CDS
AATGGCTGAACCTAAGGAAT+GGG	0.512233	2:-36971614	MsaT008541.1:CDS
AATTTGCGAAGTTGTGGATT+TGG	0.394705	2:-36971644	MsaT008541.1:CDS
ACATGGTGAGTTTGTGGAGT+TGG	0.488907	2:-36971584	MsaT008541.1:CDS
ACATTCAAGATGAAAGAGCT+CGG	0.609572	2:-36972258	MsaT008541.1:CDS
AGATTGAAAACTATGCACCA+AGG	0.736473	2:-36971868	MsaT008541.1:intron
AGTTTATGATATAAGTGAAC+TGG	0.450570	2:-36971779	MsaT008541.1:CDS
ATATGAGCAACAAATGATTG+AGG	0.536989	2:-36972071	MsaT008541.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	36971564	36972314	36971564	ID=MsaG008541
Chr2	mRNA	36971564	36972314	36971564	ID=MsaT008541.1;Parent=MsaG008541
Chr2	exon	36971564	36971831	36971564	ID=MsaT008541.1.exon2;Parent=MsaT008541.1
Chr2	CDS	36971564	36971831	36971564	ID=cds.MsaT008541.1;Parent=MsaT008541.1
Chr2	exon	36971869	36972314	36971869	ID=MsaT008541.1.exon1;Parent=MsaT008541.1
Chr2	CDS	36971869	36972314	36971869	ID=cds.MsaT008541.1;Parent=MsaT008541.1

Gene Sequence

>MsaT008541.1

ATGGGTCGTCCACGTGGAAAATTAACTTTGAAACACATTCAAGATGAAAGAGCTCGGAAATTAGCTTTCAATCATAGAAGCAAGAGATTGGCAAAAAGAGTTTCTGAATTTTCTAACAAGTTTGGAGTTGAAGCTTGCTTGATTGTATATGATGGTGATGGTGATGGTAGACCAATGACTACGCCACAAGATTCGACAATTGTACGGTCCATGCTTGAAAAATATGAGCAACAAATGATTGAGGGTACAACTACAAAGATCTTTGATGTGAAAGACTATTTTGCAAATAAGAAGAATAAGATTGAAGCTGAGATTTCCATAGTGCACAAAGAGATTGTGAAGAACAAGTATCCATCTTGGGATCCATGTTTCATTAACATGGATGGGAAGCAACTCAAAGCCTTCACTGCTATTGTAAATGCCAAGATTGAAAACTATGCACCAAGGCAGTATACCCTTGATGATCATTTGAAGCAAGTTTATGATATAAGTGAACTGGTTCAAATGCCATATAGCTCTGATGATCCTTTGAAGCCACTTGATGATACTATTAATGAGACTGTGGATTTCACTAATCATGTTAGTTTGCCTCCTGTTTCATCAACAAACAAAATTTGCGAAGTTGTGGATTTGGCTGATCTAATGGCTGAACCTAAGGAATGGGCTAATCAACATGGTGAGTTTGTGGAGTTGGATGATCTAGTGGCTGAATAA

Protein sequence

>MsaT008541.1

MGRPRGKLTLKHIQDERARKLAFNHRSKRLAKRVSEFSNKFGVEACLIVYDGDGDGRPMTTPQDSTIVRSMLEKYEQQMIEGTTTKIFDVKDYFANKKNKIEAEISIVHKEIVKNKYPSWDPCFINMDGKQLKAFTAIVNAKIENYAPRQYTLDDHLKQVYDISELVQMPYSSDDPLKPLDDTINETVDFTNHVSLPPVSSTNKICEVVDLADLMAEPKEWANQHGEFVELDDLVAE*