AlfalfaGEDB | MsaG008544

M. sativa ssp. caerulea / MsaG008544

KEGG: -
GO: -
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008544	XP_003595578.1	79.923	259	31	2	4	262	2	239	2.10e-149	427

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008544	Q2HRQ1	79.923	259	31	2	4	262	2	239	1.00e-149	427

TFs/TRs:

Gene ID	Type	Classification
MsaG008544	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000830	MsaG008544	0.808558	4.974803e-50	8.205141e-48
MsaG003351	MsaG008544	0.812737	6.274975e-51	1.146066e-48
MsaG005486	MsaG008544	0.831241	3.364462e-55	1.008956e-52
MsaG008544	MsaG018250	0.814601	2.449993e-51	4.688506e-49
MsaG008544	MsaG020220	0.808970	4.064072e-50	6.770015e-48
MsaG008544	MsaG024305	0.831886	2.338055e-55	7.145541e-53
MsaG008544	MsaG027652	0.800723	2.109544e-48	2.899232e-46
MsaG008544	MsaG030774	0.812777	6.150335e-51	1.124413e-48
MsaG008544	MsaG034248	0.818509	3.295900e-52	6.970351e-50
MsaG008544	MsaG034709	0.804353	3.796426e-49	5.670031e-47
MsaG008544	MsaG034713	0.800078	2.850984e-48	3.861467e-46
MsaG008544	MsaG034851	0.813805	3.665593e-51	6.876499e-49
MsaG008544	MsaG035699	0.810685	1.745273e-50	3.030556e-48
MsaG008544	MsaG036846	0.808735	4.560397e-50	7.554173e-48
MsaG008544	MsaG037968	0.815647	1.438884e-51	2.827518e-49
MsaG008544	MsaG045692	0.804993	2.795016e-49	4.236753e-47
MsaG008544	MsaG045670	0.806724	1.214427e-49	1.917183e-47
MsaG008544	MsaG046735	0.804649	3.294972e-49	4.954800e-47
MsaG008544	MsaG031512	0.822932	3.207234e-53	7.626901e-51
MsaG008544	MsaG033085	0.829682	8.063976e-55	2.312569e-52
MsaG008544	MsaG042835	0.813603	4.059977e-51	7.577547e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008544	MtrunA17_Chr2g0303981	69.540	174	51	1	1	172	1	174	1.47e-83	248
MsaG008544	MtrunA17_Chr4g0059631	46.154	221	104	5	1	214	1	213	5.43e-60	190
MsaG008544	MtrunA17_Chr4g0022641	44.255	235	102	6	4	222	2	223	5.86e-56	184
MsaG008544	MtrunA17_Chr1g0212471	48.756	201	78	5	4	198	2	183	8.47e-56	177
MsaG008544	MtrunA17_Chr6g0457851	38.710	155	88	2	4	152	12	165	1.51e-31	119
MsaG008544	MtrunA17_Chr1g0212151	39.744	156	87	2	4	153	2	156	2.71e-31	118
MsaG008544	MtrunA17_Chr6g0449851	33.663	202	120	6	4	192	2	202	3.75e-30	114
MsaG008544	MtrunA17_Chr6g0449861	38.065	155	89	3	4	152	10	163	2.62e-26	105

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 46 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAAAATCCATCTATTGTTTC+TGG	0.138351	2:-37006252	None:intergenic
ACTTGGTAATGTTGCATATT+TGG	0.170747	2:+37006167	MsaT008544.1:CDS
GGAATGGGAAACTCAATTTA+TGG	0.183833	2:+37006215	MsaT008544.1:CDS
TCTTTCACATCAAAGATCTT+TGG	0.287719	2:-37005733	None:intergenic
ATGCAACAAAGTACTGAAAA+TGG	0.300561	2:+37005946	MsaT008544.1:CDS
CACAATCTCTTTGTGCACTT+TGG	0.338528	2:-37005797	None:intergenic
ATGATTACAAGCTTGAATCT+TGG	0.383659	2:-37005902	None:intergenic
TCCTGACCAGGTTTAGCAAC+TGG	0.388453	2:-37006195	None:intergenic
TCATGGATATGTTGCATTTG+AGG	0.410645	2:-37006060	None:intergenic
GCTTTGCCAGAAACAATAGA+TGG	0.415718	2:+37006246	MsaT008544.1:CDS
ACTTGGTGAAGTTGAAGAAT+TGG	0.421405	2:+37006116	MsaT008544.1:CDS
CTATTAAACACATTCAAGAT+TGG	0.421571	2:+37005512	MsaT008544.1:CDS
TGCTAAACCTGGTCAGGAAT+GGG	0.447809	2:+37006200	MsaT008544.1:CDS
TGTGAGGAGACAACATTATT+CGG	0.449930	2:-37006006	None:intergenic
ATGTTGTCTCCTCACATTCA+AGG	0.456551	2:+37006013	MsaT008544.1:CDS
TCCAGTTGCTAAACCTGGTC+AGG	0.458685	2:+37006194	MsaT008544.1:CDS
TGAGTTTCCCATTCCTGACC+AGG	0.483105	2:-37006207	None:intergenic
GAATCTTGTGGCATAGTCAT+TGG	0.501448	2:-37005652	None:intergenic
ATGAAGCATGGATGCCAAGT+TGG	0.507763	2:-37005832	None:intergenic
CAATCAAAGAAGCAATGGAT+TGG	0.512118	2:+37005555	MsaT008544.1:CDS
TTGCTAAACCTGGTCAGGAA+TGG	0.512431	2:+37006199	MsaT008544.1:CDS
CCTTCCATGTTCATGAAGCA+TGG	0.519687	2:-37005844	None:intergenic
GCATCCATGCTTCATGAACA+TGG	0.521603	2:+37005840	MsaT008544.1:CDS
ATACAAGCAACAAAAGATTG+AGG	0.523829	2:+37005702	MsaT008544.1:CDS
GTGGCTTCAAATGATCATCA+TGG	0.534306	2:-37006077	None:intergenic
GCTTGCTTAATTGTGTATGA+TGG	0.534651	2:+37005619	MsaT008544.1:CDS
GTTTAATAGTTAATTTCCCA+CGG	0.538383	2:-37005498	None:intergenic
TACAAGCAACAAAAGATTGA+GGG	0.545039	2:+37005703	MsaT008544.1:CDS
ACATTCAAGATTGGAGAGCT+CGG	0.553672	2:+37005521	MsaT008544.1:CDS
CCATGCTTCATGAACATGGA+AGG	0.554983	2:+37005844	MsaT008544.1:CDS
ACTTTCAATCAAAGAAGCAA+TGG	0.559273	2:+37005550	MsaT008544.1:CDS
GATTGGGCTAGTCAAGTACT+TGG	0.562422	2:+37006150	MsaT008544.1:CDS
GTAGAAATGGGTCGTGCCCG+TGG	0.563669	2:+37005481	None:intergenic
CATGCTTCATGAACATGGAA+GGG	0.576308	2:+37005845	MsaT008544.1:CDS
CGCATAATTGTCGAATCTTG+TGG	0.578423	2:-37005664	None:intergenic
ATGCTTCATGAACATGGAAG+GGG	0.583471	2:+37005846	MsaT008544.1:CDS
TTTAATAGTTAATTTCCCAC+GGG	0.586000	2:-37005497	None:intergenic
GATGATCCAGTTGCTAAACC+TGG	0.589750	2:+37006189	MsaT008544.1:CDS
ATCAAGCTTCCTTGAATGTG+AGG	0.590592	2:-37006022	None:intergenic
CTTAGTGATACTAATCGACT+TGG	0.592888	2:+37006099	MsaT008544.1:CDS
TGATGAAAATGTATCCAACT+TGG	0.601327	2:+37005818	MsaT008544.1:CDS
TTAATTGTGTATGATGGTGA+TGG	0.608708	2:+37005625	MsaT008544.1:CDS
TAGAAATGGGTCGTGCCCGT+GGG	0.613629	2:+37005482	None:intergenic
CACTACTCAGACGCAAAATG+TGG	0.617631	2:+37005981	MsaT008544.1:CDS
AGTCGATTAGTATCACTAAG+TGG	0.621773	2:-37006096	None:intergenic
CACAAGATTCGACAATTATG+CGG	0.681582	2:+37005665	MsaT008544.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	37005487	37006275	37005487	ID=MsaG008544
Chr2	mRNA	37005487	37006275	37005487	ID=MsaT008544.1;Parent=MsaG008544
Chr2	exon	37005487	37006275	37005487	ID=MsaT008544.1.exon1;Parent=MsaT008544.1
Chr2	CDS	37005487	37006275	37005487	ID=cds.MsaT008544.1;Parent=MsaT008544.1

Gene Sequence

>MsaT008544.1

ATGGGTCGTGCCCGTGGGAAATTAACTATTAAACACATTCAAGATTGGAGAGCTCGGAAATCAACTTTCAATCAAAGAAGCAATGGATTGGCAAAAAAAGTTTCTGAATTTTCTAGCAAGTTTGGAGTTGAAGCTTGCTTAATTGTGTATGATGGTGATGGTAGACCAATGACTATGCCACAAGATTCGACAATTATGCGGTCCATGCTTGAAAAATACAAGCAACAAAAGATTGAGGGTACAACTCCAAAGATCTTTGATGTGAAAGACTATTTTGCAAATAAGAAGAATAAGATTGAAGCTGATATTTCCAAAGTGCACAAAGAGATTGTGATGAAAATGTATCCAACTTGGCATCCATGCTTCATGAACATGGAAGGGGAACAGCTCAAAACTTTCATTGCTATTGTAGATGCCAAGATTCAAGCTTGTAATCATAAAATTAACATGCTAAAGAAAATGCAACAAAGTACTGAAAATGGTTTCATGCTAAACACTACTCAGACGCAAAATGTGGCTCCGAATAATGTTGTCTCCTCACATTCAAGGAAGCTTGATGTCACTGATAGATTTCCTCAAATGCAACATATCCATGATGATCATTTGAAGCCACTTAGTGATACTAATCGACTTGGTGAAGTTGAAGAATTGGATGATTTTATGGATTGGGCTAGTCAAGTACTTGGTAATGTTGCATATTTGGATGATCCAGTTGCTAAACCTGGTCAGGAATGGGAAACTCAATTTATGGATTTTGATGCTTTGCCAGAAACAATAGATGGATTTTAA

Protein sequence

>MsaT008544.1

MGRARGKLTIKHIQDWRARKSTFNQRSNGLAKKVSEFSSKFGVEACLIVYDGDGRPMTMPQDSTIMRSMLEKYKQQKIEGTTPKIFDVKDYFANKKNKIEADISKVHKEIVMKMYPTWHPCFMNMEGEQLKTFIAIVDAKIQACNHKINMLKKMQQSTENGFMLNTTQTQNVAPNNVVSSHSRKLDVTDRFPQMQHIHDDHLKPLSDTNRLGEVEELDDFMDWASQVLGNVAYLDDPVAKPGQEWETQFMDFDALPETIDGF*