Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008600 | XP_039682898.1 | 75.188 | 798 | 145 | 7 | 1 | 745 | 1 | 798 | 0.0 | 1158 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008600 | sp|Q9SWG3|FAR1_ARATH | 26.132 | 486 | 292 | 12 | 237 | 713 | 292 | 719 | 2.46e-41 | 166 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008600 | A0A2Z6NCL9 | 67.797 | 708 | 141 | 10 | 81 | 736 | 1 | 673 | 0.0 | 907 |
Gene ID | Type | Classification |
---|---|---|
MsaG008600 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008600 | MtrunA17_Chr3g0088371 | 80.105 | 191 | 35 | 1 | 558 | 745 | 1 | 191 | 1.19e-103 | 315 |
MsaG008600 | MtrunA17_Chr3g0082121 | 26.540 | 682 | 355 | 20 | 57 | 667 | 49 | 655 | 3.38e-59 | 213 |
MsaG008600 | MtrunA17_Chr1g0172971 | 75.758 | 132 | 17 | 1 | 1 | 132 | 1 | 117 | 1.88e-56 | 202 |
MsaG008600 | MtrunA17_Chr2g0324011 | 30.159 | 378 | 213 | 7 | 230 | 605 | 243 | 571 | 2.54e-53 | 194 |
MsaG008600 | MtrunA17_Chr8g0363841 | 29.730 | 370 | 212 | 8 | 237 | 605 | 258 | 580 | 9.29e-45 | 171 |
MsaG008600 | MtrunA17_Chr1g0203721 | 26.539 | 471 | 285 | 10 | 220 | 683 | 289 | 705 | 1.25e-43 | 169 |
MsaG008600 | MtrunA17_Chr1g0202341 | 28.571 | 378 | 213 | 11 | 230 | 602 | 284 | 609 | 2.37e-40 | 158 |
MsaG008600 | MtrunA17_Chr6g0477261 | 26.619 | 417 | 256 | 11 | 237 | 649 | 122 | 492 | 9.70e-40 | 156 |
MsaG008600 | MtrunA17_Chr2g0296781 | 27.404 | 416 | 252 | 11 | 237 | 648 | 233 | 602 | 1.83e-39 | 155 |
MsaG008600 | MtrunA17_Chr6g0458391 | 25.876 | 371 | 223 | 5 | 234 | 602 | 445 | 765 | 2.99e-39 | 155 |
MsaG008600 | MtrunA17_Chr3g0118611 | 26.009 | 446 | 273 | 11 | 237 | 679 | 185 | 576 | 1.67e-36 | 147 |
MsaG008600 | MtrunA17_Chr5g0448761 | 24.828 | 435 | 275 | 9 | 237 | 668 | 307 | 692 | 2.48e-36 | 146 |
MsaG008600 | MtrunA17_Chr1g0207551 | 26.464 | 427 | 252 | 10 | 237 | 658 | 272 | 641 | 3.89e-36 | 146 |
MsaG008600 | MtrunA17_Chr3g0080351 | 26.897 | 435 | 254 | 11 | 230 | 658 | 299 | 675 | 5.23e-36 | 145 |
MsaG008600 | MtrunA17_Chr2g0329031 | 25.290 | 431 | 257 | 11 | 239 | 663 | 247 | 618 | 9.57e-36 | 144 |
MsaG008600 | MtrunA17_Chr5g0440451 | 24.942 | 429 | 268 | 9 | 237 | 663 | 288 | 664 | 1.90e-35 | 144 |
MsaG008600 | MtrunA17_Chr5g0441581 | 26.392 | 413 | 220 | 10 | 237 | 629 | 261 | 609 | 2.73e-33 | 136 |
MsaG008600 | MtrunA17_Chr2g0287651 | 25.683 | 366 | 217 | 8 | 239 | 602 | 320 | 632 | 9.46e-32 | 132 |
MsaG008600 | MtrunA17_Chr1g0198761 | 28.649 | 370 | 201 | 12 | 237 | 600 | 298 | 610 | 6.79e-31 | 129 |
MsaG008600 | MtrunA17_Chr2g0287061 | 25.000 | 372 | 221 | 9 | 237 | 605 | 388 | 704 | 7.26e-31 | 129 |
MsaG008600 | MtrunA17_Chr1g0164591 | 36.196 | 163 | 98 | 2 | 230 | 390 | 149 | 307 | 2.54e-29 | 119 |
MsaG008600 | MtrunA17_Chr1g0196541 | 24.110 | 365 | 233 | 7 | 239 | 602 | 235 | 556 | 1.25e-28 | 122 |
MsaG008600 | MtrunA17_Chr2g0291581 | 26.630 | 368 | 225 | 10 | 237 | 602 | 297 | 621 | 5.46e-27 | 117 |
MsaG008600 | MtrunA17_Chr5g0448511 | 24.259 | 371 | 230 | 8 | 237 | 605 | 79 | 400 | 6.09e-27 | 115 |
MsaG008600 | MtrunA17_Chr1g0203051 | 24.118 | 340 | 212 | 6 | 239 | 577 | 322 | 616 | 3.66e-26 | 114 |
MsaG008600 | MtrunA17_Chr2g0290391 | 25.815 | 368 | 208 | 11 | 237 | 600 | 305 | 611 | 3.83e-25 | 111 |
MsaG008600 | MtrunA17_Chr2g0276841 | 29.319 | 382 | 196 | 15 | 239 | 609 | 318 | 636 | 5.46e-25 | 110 |
MsaG008600 | MtrunA17_Chr2g0291591 | 28.230 | 209 | 139 | 4 | 237 | 441 | 300 | 501 | 1.74e-20 | 96.3 |
MsaG008600 | MtrunA17_Chr5g0431001 | 30.055 | 183 | 118 | 4 | 237 | 415 | 312 | 488 | 1.49e-19 | 92.8 |
MsaG008600 | MtrunA17_Chr2g0294841 | 27.193 | 228 | 138 | 4 | 207 | 424 | 270 | 479 | 1.25e-16 | 84.3 |
MsaG008600 | MtrunA17_Chr1g0149131 | 29.060 | 117 | 73 | 3 | 275 | 387 | 1 | 111 | 7.92e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008600 | AT4G15090.1 | 26.132 | 486 | 292 | 12 | 237 | 713 | 292 | 719 | 2.50e-42 | 166 |
MsaG008600 | AT4G15090.5 | 26.132 | 486 | 292 | 12 | 237 | 713 | 292 | 719 | 2.50e-42 | 166 |
MsaG008600 | AT4G15090.3 | 26.132 | 486 | 292 | 12 | 237 | 713 | 292 | 719 | 2.50e-42 | 166 |
MsaG008600 | AT4G15090.2 | 26.132 | 486 | 292 | 12 | 237 | 713 | 292 | 719 | 2.50e-42 | 166 |
MsaG008600 | AT4G15090.4 | 26.132 | 486 | 292 | 12 | 237 | 713 | 292 | 719 | 2.50e-42 | 166 |
MsaG008600 | AT3G22170.2 | 24.882 | 422 | 258 | 9 | 230 | 648 | 294 | 659 | 1.20e-35 | 145 |
MsaG008600 | AT3G22170.1 | 24.882 | 422 | 258 | 9 | 230 | 648 | 294 | 659 | 1.20e-35 | 145 |
MsaG008600 | AT4G38180.1 | 25.876 | 371 | 224 | 9 | 237 | 605 | 316 | 637 | 5.07e-34 | 140 |
MsaG008600 | AT2G27110.2 | 24.172 | 513 | 328 | 14 | 237 | 743 | 263 | 720 | 3.26e-33 | 137 |
MsaG008600 | AT2G27110.1 | 24.172 | 513 | 328 | 14 | 237 | 743 | 263 | 720 | 3.26e-33 | 137 |
MsaG008600 | AT2G27110.3 | 24.660 | 515 | 323 | 15 | 237 | 743 | 118 | 575 | 3.71e-33 | 137 |
MsaG008600 | AT1G76320.3 | 24.893 | 466 | 280 | 12 | 239 | 693 | 231 | 637 | 6.12e-32 | 132 |
MsaG008600 | AT1G76320.1 | 24.506 | 506 | 303 | 14 | 239 | 733 | 231 | 668 | 9.07e-32 | 132 |
MsaG008600 | AT1G76320.4 | 24.506 | 506 | 303 | 14 | 239 | 733 | 231 | 668 | 9.07e-32 | 132 |
MsaG008600 | AT1G76320.2 | 24.893 | 466 | 280 | 12 | 239 | 693 | 231 | 637 | 9.25e-32 | 132 |
MsaG008600 | AT3G06250.2 | 23.440 | 593 | 357 | 17 | 39 | 601 | 178 | 703 | 9.26e-31 | 129 |
MsaG008600 | AT3G06250.1 | 23.440 | 593 | 357 | 17 | 39 | 601 | 178 | 703 | 9.26e-31 | 129 |
MsaG008600 | AT3G06250.3 | 23.440 | 593 | 357 | 17 | 39 | 601 | 178 | 703 | 9.26e-31 | 129 |
MsaG008600 | AT5G18960.2 | 25.886 | 367 | 215 | 10 | 237 | 601 | 416 | 727 | 2.78e-28 | 122 |
MsaG008600 | AT5G18960.1 | 25.886 | 367 | 215 | 10 | 237 | 601 | 416 | 727 | 2.78e-28 | 122 |
MsaG008600 | AT4G38170.1 | 20.862 | 441 | 265 | 9 | 237 | 659 | 81 | 455 | 1.09e-27 | 118 |
MsaG008600 | AT2G32250.5 | 23.212 | 685 | 400 | 23 | 15 | 658 | 6 | 605 | 1.85e-27 | 119 |
MsaG008600 | AT2G32250.2 | 23.054 | 668 | 390 | 22 | 24 | 650 | 13 | 597 | 2.01e-27 | 119 |
MsaG008600 | AT2G32250.4 | 23.054 | 668 | 390 | 22 | 24 | 650 | 13 | 597 | 2.01e-27 | 119 |
MsaG008600 | AT2G32250.6 | 23.054 | 668 | 390 | 22 | 24 | 650 | 13 | 597 | 2.34e-27 | 119 |
MsaG008600 | AT2G32250.1 | 23.054 | 668 | 390 | 22 | 24 | 650 | 13 | 597 | 2.34e-27 | 119 |
MsaG008600 | AT2G32250.3 | 23.054 | 668 | 390 | 22 | 24 | 650 | 13 | 597 | 2.34e-27 | 119 |
MsaG008600 | AT2G32250.7 | 23.328 | 643 | 371 | 21 | 57 | 658 | 3 | 564 | 3.90e-27 | 118 |
MsaG008600 | AT2G32250.8 | 23.328 | 643 | 371 | 21 | 57 | 658 | 3 | 564 | 4.24e-27 | 118 |
MsaG008600 | AT4G19990.6 | 26.065 | 399 | 235 | 11 | 237 | 629 | 239 | 583 | 3.00e-26 | 115 |
MsaG008600 | AT4G19990.2 | 26.065 | 399 | 235 | 11 | 237 | 629 | 239 | 583 | 3.00e-26 | 115 |
MsaG008600 | AT4G19990.5 | 25.862 | 406 | 241 | 10 | 230 | 629 | 232 | 583 | 3.23e-26 | 115 |
MsaG008600 | AT4G19990.1 | 26.108 | 406 | 240 | 11 | 230 | 629 | 175 | 526 | 3.48e-26 | 115 |
MsaG008600 | AT4G19990.7 | 25.862 | 406 | 241 | 10 | 230 | 629 | 246 | 597 | 3.67e-26 | 115 |
MsaG008600 | AT4G19990.3 | 26.065 | 399 | 235 | 11 | 237 | 629 | 239 | 583 | 3.89e-26 | 115 |
MsaG008600 | AT4G19990.4 | 26.065 | 399 | 235 | 11 | 237 | 629 | 239 | 583 | 3.89e-26 | 115 |
MsaG008600 | AT1G80010.1 | 23.810 | 378 | 236 | 12 | 230 | 602 | 331 | 661 | 8.25e-23 | 104 |
MsaG008600 | AT5G28530.5 | 22.300 | 574 | 336 | 19 | 56 | 600 | 60 | 552 | 1.94e-22 | 102 |
MsaG008600 | AT5G28530.4 | 22.300 | 574 | 340 | 18 | 56 | 600 | 60 | 556 | 2.56e-22 | 102 |
MsaG008600 | AT1G10240.2 | 26.087 | 368 | 206 | 13 | 239 | 599 | 296 | 604 | 7.29e-22 | 101 |
MsaG008600 | AT1G10240.1 | 26.087 | 368 | 206 | 13 | 239 | 599 | 296 | 604 | 7.29e-22 | 101 |
MsaG008600 | AT1G52520.1 | 22.826 | 368 | 239 | 10 | 237 | 602 | 314 | 638 | 1.86e-18 | 90.5 |
MsaG008600 | AT5G28530.3 | 23.784 | 370 | 213 | 12 | 237 | 600 | 309 | 615 | 5.84e-18 | 89.0 |
MsaG008600 | AT5G28530.2 | 23.784 | 370 | 213 | 12 | 237 | 600 | 309 | 615 | 5.84e-18 | 89.0 |
MsaG008600 | AT5G28530.1 | 23.784 | 370 | 217 | 11 | 237 | 600 | 309 | 619 | 8.46e-18 | 88.6 |
Find 104 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGCAGAGTTTGACTTTA+AGG | 0.077706 | 2:-38334433 | MsaT008600.1:CDS |
AGTCGCTTCTTTGACTTAAT+TGG | 0.149305 | 2:+38333613 | None:intergenic |
TAAATTTCAGCTGCCTTTAT+TGG | 0.156227 | 2:-38335023 | MsaT008600.1:intron |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 2:-38334475 | MsaT008600.1:CDS |
AATCGTCTGTGGTTTCTTAT+TGG | 0.195298 | 2:+38334896 | None:intergenic |
TTCTTTGACTTAATTGGATT+TGG | 0.266522 | 2:+38333619 | None:intergenic |
TTTCTTCTCGAAATGATCTA+AGG | 0.282465 | 2:+38335868 | None:intergenic |
GCCTTCCAATGTTGATGTTT+TGG | 0.297192 | 2:-38334184 | MsaT008600.1:CDS |
TCTGCTGTTGGCCTATTGTT+AGG | 0.307631 | 2:+38336059 | None:intergenic |
CGATCATGGTCTTCAAAACT+TGG | 0.320481 | 2:+38334135 | None:intergenic |
TTGAAGATCTTGGAGTTCTT+AGG | 0.331625 | 2:-38334015 | MsaT008600.1:CDS |
GCATACGATTTGCGTAAGTT+TGG | 0.338878 | 2:+38334619 | None:intergenic |
ATGATTGTCAAAACCAATAA+AGG | 0.364908 | 2:+38335010 | None:intergenic |
GAGAGATGATGAAGCTTTAT+CGG | 0.365492 | 2:-38333527 | MsaT008600.1:CDS |
CTCGACGGTGTTCTTGAAGC+TGG | 0.383392 | 2:-38333775 | MsaT008600.1:CDS |
TTTGTTTCTTCCGATTGATA+AGG | 0.384635 | 2:+38333551 | None:intergenic |
TTCTTTGAACTTTGGTGAGG+TGG | 0.391609 | 2:+38333645 | None:intergenic |
TTTGGTCTTTCTTTGAACTT+TGG | 0.395035 | 2:+38333637 | None:intergenic |
GTTTACTTAATCCTAACAAT+AGG | 0.398230 | 2:-38336070 | MsaT008600.1:CDS |
TTCCTTCAAATACTATTATG+AGG | 0.399583 | 2:-38334301 | MsaT008600.1:CDS |
GAAGGCCTACCTCAGACTTT+AGG | 0.402909 | 2:-38334650 | MsaT008600.1:CDS |
CGAGAAGAAAATGAAGTTCA+AGG | 0.410614 | 2:-38335855 | MsaT008600.1:CDS |
TATGAGGAGGTCACAACAAA+AGG | 0.413436 | 2:-38334285 | MsaT008600.1:CDS |
CATGTCGTATGTTTGAGAAC+AGG | 0.415108 | 2:-38334059 | MsaT008600.1:CDS |
AAGCACGTCTTATGAAGTTA+TGG | 0.424803 | 2:-38335793 | MsaT008600.1:CDS |
AAAACACCTGGAAAACTATT+CGG | 0.428349 | 2:+38334837 | None:intergenic |
GCTGTTGGTGAAACATCTGC+TGG | 0.428855 | 2:-38333676 | MsaT008600.1:CDS |
ATCCCAACAGTCAGCTGATT+CGG | 0.437226 | 2:-38334383 | MsaT008600.1:CDS |
TCCATGATTCTTTATTGCTA+GGG | 0.444266 | 2:+38336270 | None:intergenic |
TTCCATGATTCTTTATTGCT+AGG | 0.445442 | 2:+38336269 | None:intergenic |
CTTGCTTTGTATTTATTCAC+AGG | 0.446936 | 2:-38334335 | MsaT008600.1:CDS |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 2:-38335990 | MsaT008600.1:CDS |
AGAGATGATGAAGCTTTATC+GGG | 0.447874 | 2:-38333526 | MsaT008600.1:CDS |
TCTTTGAACTTTGGTGAGGT+GGG | 0.449699 | 2:+38333646 | None:intergenic |
TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 2:-38334601 | MsaT008600.1:CDS |
ATGTGTATAAGATATATAGA+TGG | 0.452819 | 2:-38335938 | MsaT008600.1:CDS |
ACCATGATCGATTTGATGAA+AGG | 0.456118 | 2:-38334122 | MsaT008600.1:CDS |
GACCGAATCAGCTGACTGTT+GGG | 0.471309 | 2:+38334381 | None:intergenic |
CGCTTTAAAACATATTGTCC+AGG | 0.471916 | 2:+38333958 | None:intergenic |
AGCACGTCTTATGAAGTTAT+GGG | 0.473918 | 2:-38335792 | MsaT008600.1:CDS |
CTAAGGTAACGCGAATGCTC+TGG | 0.476897 | 2:+38335885 | None:intergenic |
GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 2:-38334602 | MsaT008600.1:CDS |
TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 2:+38335755 | None:intergenic |
CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 2:+38334299 | None:intergenic |
CATTCTTTGAAGACAATACC+TGG | 0.489494 | 2:-38333976 | MsaT008600.1:CDS |
GTCTTCAGTGCCAACATTGA+CGG | 0.491796 | 2:+38333891 | None:intergenic |
CTGTTGGTGAAACATCTGCT+GGG | 0.493682 | 2:-38333675 | MsaT008600.1:CDS |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 2:-38334461 | MsaT008600.1:CDS |
CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 2:-38336271 | MsaT008600.1:CDS |
TAACAAAGACGATTTCAAGA+AGG | 0.498190 | 2:-38336096 | MsaT008600.1:CDS |
TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 2:+38335996 | None:intergenic |
AGCTGGAATATATTTGAAGC+TGG | 0.507410 | 2:-38335973 | MsaT008600.1:CDS |
ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 2:-38336141 | MsaT008600.1:CDS |
TGAATAAATACAAAGCAAGA+AGG | 0.517731 | 2:+38334339 | None:intergenic |
TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 2:+38334493 | None:intergenic |
ATATCAACTTCATCTGAGAC+TGG | 0.523078 | 2:-38336395 | MsaT008600.1:CDS |
GGTAATTATGCATATAACAC+TGG | 0.523547 | 2:-38336203 | MsaT008600.1:CDS |
AACAAAGACGATTTCAAGAA+GGG | 0.524922 | 2:-38336095 | MsaT008600.1:CDS |
GCCTTTCATCAAATCGATCA+TGG | 0.528178 | 2:+38334121 | None:intergenic |
TAAGATATATAGATGGGATG+TGG | 0.528498 | 2:-38335931 | MsaT008600.1:CDS |
GAATAAATACAAAGCAAGAA+GGG | 0.528540 | 2:+38334340 | None:intergenic |
CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 2:+38334304 | None:intergenic |
TTGGCTTTGTTCATGGCACA+TGG | 0.532868 | 2:-38334811 | MsaT008600.1:CDS |
ATGAGGAGGTCACAACAAAA+GGG | 0.534837 | 2:-38334284 | MsaT008600.1:CDS |
CCATGATTCTTTATTGCTAG+GGG | 0.537011 | 2:+38336271 | None:intergenic |
TTGAAGACTTAGATGGCGGC+GGG | 0.539180 | 2:+38333707 | None:intergenic |
GATCATGGTCTTCAAAACTT+GGG | 0.539960 | 2:+38334136 | None:intergenic |
AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 2:+38334498 | None:intergenic |
GCTTTCAGCTTATTGACAGA+TGG | 0.541707 | 2:+38333916 | None:intergenic |
TGCATCCAAAACATCAACAT+TGG | 0.544202 | 2:+38334179 | None:intergenic |
AACACAATAACGCACTAGCC+TGG | 0.552106 | 2:+38334865 | None:intergenic |
AAGATCTTGGAGTTCTTAGG+TGG | 0.553166 | 2:-38334012 | MsaT008600.1:CDS |
ATGTCGTATGTTTGAGAACA+GGG | 0.560861 | 2:-38334058 | MsaT008600.1:CDS |
GGCCTACCTCAGACTTTAGG+TGG | 0.565384 | 2:-38334647 | MsaT008600.1:CDS |
TCTTCAAAAGTAGCTGCTGT+TGG | 0.568528 | 2:-38333691 | MsaT008600.1:CDS |
TGAAGCTTTATCGGGGATTG+TGG | 0.569043 | 2:-38333518 | MsaT008600.1:CDS |
TCCAAAACATCAACATTGGA+AGG | 0.569301 | 2:+38334183 | None:intergenic |
GGACCGAATCAGCTGACTGT+TGG | 0.570066 | 2:+38334380 | None:intergenic |
TTTGAAGACTTAGATGGCGG+CGG | 0.570969 | 2:+38333706 | None:intergenic |
GAATGCTCTGGTTTATGTAA+TGG | 0.573489 | 2:+38335897 | None:intergenic |
CTGAAAGCGACCGTCAATGT+TGG | 0.576284 | 2:-38333901 | MsaT008600.1:CDS |
TCTTATGAAGTTATGGGTCA+AGG | 0.580120 | 2:-38335786 | MsaT008600.1:CDS |
TCTTTCTTTGAACTTTGGTG+AGG | 0.584238 | 2:+38333642 | None:intergenic |
ATCATGGTCTTCAAAACTTG+GGG | 0.595792 | 2:+38334137 | None:intergenic |
CTTACGCAAATCGTATGCAT+TGG | 0.597846 | 2:-38334614 | MsaT008600.1:CDS |
TATGATGATGCTGATAATGA+CGG | 0.599988 | 2:-38334207 | MsaT008600.1:CDS |
TGTGTATAAGATATATAGAT+GGG | 0.601002 | 2:-38335937 | MsaT008600.1:CDS |
TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 2:+38333867 | None:intergenic |
AATAAATACAAAGCAAGAAG+GGG | 0.601675 | 2:+38334341 | None:intergenic |
ACCAGTGGACTGTCTGCTGT+TGG | 0.602965 | 2:+38336047 | None:intergenic |
TCACTGATTCATGCTGAGAG+TGG | 0.606950 | 2:-38336350 | MsaT008600.1:CDS |
CTTCAAATACTATTATGAGG+AGG | 0.609725 | 2:-38334298 | MsaT008600.1:CDS |
GCCAACAGCAGACAGTCCAC+TGG | 0.611268 | 2:-38336048 | MsaT008600.1:CDS |
ATGATGATGCTGATAATGAC+GGG | 0.620534 | 2:-38334206 | MsaT008600.1:CDS |
TTCACAAACTCAATAACCAG+TGG | 0.633415 | 2:+38336032 | None:intergenic |
TGTTGGTGAAACATCTGCTG+GGG | 0.639082 | 2:-38333674 | MsaT008600.1:CDS |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 2:-38334460 | MsaT008600.1:CDS |
TGGTCTGTATAAATCGTCTG+TGG | 0.650424 | 2:+38334885 | None:intergenic |
GACAAGCCACCTAAAGTCTG+AGG | 0.653221 | 2:+38334641 | None:intergenic |
TGTCGTATGTTTGAGAACAG+GGG | 0.653807 | 2:-38334057 | MsaT008600.1:CDS |
AGCCACCTAAAGTCTGAGGT+AGG | 0.684957 | 2:+38334645 | None:intergenic |
GAGATGATGAAGCTTTATCG+GGG | 0.689274 | 2:-38333525 | MsaT008600.1:CDS |
AGGGGTGTACTTGTTTACAA+CGG | 0.695086 | 2:+38334359 | None:intergenic |
ACAGACGATTTATACAGACC+AGG | 0.720235 | 2:-38334883 | MsaT008600.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 38333507 | 38336426 | 38333507 | ID=MsaG008600 |
Chr2 | mRNA | 38333507 | 38336426 | 38333507 | ID=MsaT008600.1;Parent=MsaG008600 |
Chr2 | exon | 38333507 | 38335035 | 38333507 | ID=MsaT008600.1.exon2;Parent=MsaT008600.1 |
Chr2 | CDS | 38333507 | 38335035 | 38333507 | ID=cds.MsaT008600.1;Parent=MsaT008600.1 |
Chr2 | exon | 38335718 | 38336426 | 38335718 | ID=MsaT008600.1.exon1;Parent=MsaT008600.1 |
Chr2 | CDS | 38335718 | 38336426 | 38335718 | ID=cds.MsaT008600.1;Parent=MsaT008600.1 |
Gene Sequence |
Protein sequence |