AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG008734


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG008734 MtrunA17_Chr2g0305371 87.440 414 10 3 1 372 44 457 0.0 745
MsaG008734 MtrunA17_Chr2g0305391 86.574 432 29 4 347 758 130 552 0.0 723
MsaG008734 MtrunA17_Chr8g0376161 36.968 376 177 12 368 721 173 510 1.58e-52 191
MsaG008734 MtrunA17_Chr4g0064391 37.725 334 167 9 364 676 157 470 7.02e-52 189
MsaG008734 MtrunA17_Chr4g0071851 33.413 416 231 13 372 757 178 577 1.49e-42 163
MsaG008734 MtrunA17_Chr6g0477001 39.109 202 76 3 220 374 37 238 1.87e-38 146
MsaG008734 MtrunA17_Chr2g0298681 44.118 170 87 2 347 508 144 313 1.17e-37 149
MsaG008734 MtrunA17_Chr3g0125251 35.204 196 77 8 226 371 1253 1448 1.42e-23 107
MsaG008734 MtrunA17_Chr1g0201621 32.323 198 84 5 224 371 10 207 1.82e-23 104
MsaG008734 MtrunA17_Chr1g0201311 32.323 198 84 5 224 371 10 207 2.37e-23 104
MsaG008734 MtrunA17_Chr2g0297191 36.449 107 42 2 286 366 1044 1150 1.23e-14 78.2
MsaG008734 MtrunA17_Chr3g0137621 26.901 171 111 2 378 548 229 385 2.18e-13 73.9
MsaG008734 MtrunA17_Chr1g0147121 37.037 108 42 2 285 366 903 1010 1.95e-12 71.2
MsaG008734 MtrunA17_Chr3g0126701 37.037 108 42 2 285 366 932 1039 2.70e-12 70.9
MsaG008734 MtrunA17_Chr7g0275611 37.037 108 42 2 285 366 833 940 9.47e-12 68.9
MsaG008734 MtrunA17_Chr3g0119631 25.294 170 122 2 360 524 159 328 1.19e-11 68.6
MsaG008734 MtrunA17_Chr5g0401921 33.636 110 49 2 281 366 721 830 2.63e-11 67.4
MsaG008734 MtrunA17_Chr8g0392221 32.979 94 63 0 382 475 186 279 2.64e-11 66.6
MsaG008734 MtrunA17_Chr7g0235081 31.818 110 49 1 285 368 205 314 4.21e-11 65.5
MsaG008734 MtrunA17_Chr4g0064081 27.132 129 94 0 376 504 186 314 5.26e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG008734 AT4G30860.1 57.143 343 105 4 71 372 109 450 1.87e-133 405
MsaG008734 AT5G35200.1 37.297 370 175 14 364 714 159 490 1.05e-53 195
MsaG008734 AT5G35200.2 37.297 370 175 14 364 714 159 490 1.05e-53 195
MsaG008734 AT2G01600.1 35.309 405 216 13 373 758 178 555 1.33e-49 184
MsaG008734 AT1G14910.1 33.911 404 204 15 309 673 107 486 8.02e-46 175
MsaG008734 AT1G14910.2 36.254 331 159 11 373 673 173 481 1.00e-45 174
MsaG008734 AT4G25940.1 34.770 348 188 8 375 689 187 528 2.56e-40 157
MsaG008734 AT5G57200.1 50.704 142 67 1 370 508 171 312 5.20e-39 153
MsaG008734 AT2G44150.1 38.174 241 96 4 184 374 5 242 4.42e-34 134
MsaG008734 AT3G59960.3 50.000 120 34 2 281 374 118 237 3.70e-28 115
MsaG008734 AT3G59960.2 50.000 120 34 2 281 374 118 237 3.70e-28 115
MsaG008734 AT3G59960.4 50.000 120 34 2 281 374 118 237 3.70e-28 115
MsaG008734 AT3G59960.1 50.000 120 34 2 281 374 118 237 1.14e-27 115
MsaG008734 AT1G76710.2 32.500 200 85 7 222 371 13 212 1.32e-20 96.3
MsaG008734 AT1G76710.1 32.500 200 85 7 222 371 13 212 1.32e-20 96.3
MsaG008734 AT1G76710.4 32.500 200 85 7 222 371 13 212 1.80e-20 96.3
MsaG008734 AT1G76710.3 32.500 200 85 7 222 371 13 212 1.92e-20 96.3
MsaG008734 AT1G77300.1 30.102 196 87 7 226 371 955 1150 3.44e-20 97.1
MsaG008734 AT1G77300.2 26.712 292 143 12 144 371 866 1150 6.22e-20 95.9
MsaG008734 AT5G42400.7 33.645 107 45 1 286 366 1261 1367 1.82e-14 78.2
MsaG008734 AT5G42400.2 33.645 107 45 1 286 366 1261 1367 1.82e-14 78.2
MsaG008734 AT5G42400.8 33.645 107 45 1 286 366 1261 1367 1.82e-14 78.2
MsaG008734 AT5G42400.5 33.645 107 45 1 286 366 1261 1367 1.82e-14 78.2
MsaG008734 AT5G42400.4 33.645 107 45 1 286 366 1261 1367 1.82e-14 78.2
MsaG008734 AT5G42400.1 33.645 107 45 1 286 366 1261 1367 1.82e-14 78.2
MsaG008734 AT5G42400.3 33.645 107 45 1 286 366 1261 1367 1.82e-14 78.2
MsaG008734 AT5G42400.6 33.645 107 45 1 286 366 1261 1367 1.82e-14 78.2
MsaG008734 AT4G27910.1 38.889 108 40 2 285 366 896 1003 3.57e-13 73.9
MsaG008734 AT2G25430.1 27.132 129 94 0 376 504 247 375 3.24e-12 70.5
MsaG008734 AT1G02580.1 39.423 104 39 2 285 364 555 658 7.32e-12 69.3
MsaG008734 AT4G32285.1 25.581 129 96 0 376 504 227 355 1.33e-11 68.6
MsaG008734 AT4G32285.2 25.581 129 96 0 376 504 227 355 1.33e-11 68.6
MsaG008734 AT1G05020.1 27.049 122 89 0 383 504 207 328 1.73e-11 68.2
MsaG008734 AT5G53430.1 37.037 108 42 2 285 366 912 1019 2.08e-11 68.2
MsaG008734 AT1G03050.1 24.370 357 236 11 377 709 197 543 2.22e-11 67.8
MsaG008734 AT3G61740.1 38.532 109 40 3 285 366 886 994 8.89e-11 66.2
MsaG008734 AT3G61740.2 38.532 109 40 3 285 366 850 958 8.93e-11 66.2

Find 188 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCAATGCCATGTTATAT+TGG 0.199779 2:+42255681 None:intergenic
ATTCCTTGGTGTCAAGCTTT+TGG 0.234342 2:+42257636 None:intergenic
TTGAATTCCTCGTTAGTAAA+AGG 0.240022 2:+42269242 None:intergenic
ACAAATTGGGGTGGAATGTT+AGG 0.259452 2:+42255632 None:intergenic
TGGAATTCACTTGGCCTATC+TGG 0.280213 2:+42255738 None:intergenic
TTGAAGATTTATAGAAAATC+TGG 0.287564 2:-42257152 MsaT008734.1:CDS
TGCTTCCTTTATGACGACTA+TGG 0.291651 2:-42256839 MsaT008734.1:CDS
GAGTTTATAATTGAGTATAT+TGG 0.295105 2:-42267672 MsaT008734.1:CDS
TCCAGACGGATCACGGCTTC+TGG 0.306365 2:+42270447 None:intergenic
AGGGTTGCATGCTTACAAAT+TGG 0.306375 2:+42255618 None:intergenic
GCCATGGTGCACATTTAATA+TGG 0.311418 2:+42270469 None:intergenic
TGCTTCATTCTCATCATTGT+TGG 0.323901 2:+42255946 None:intergenic
CCACTTCTCCAAAACACAAT+TGG 0.330110 2:+42267290 None:intergenic
CCCTACAAAATCTTCTATTT+CGG 0.331040 2:-42257595 MsaT008734.1:CDS
TTCCAATGCCATGTTATATT+GGG 0.338895 2:+42255682 None:intergenic
ACCATCACCATGCTAGATTC+AGG 0.350341 2:-42271588 None:intergenic
GGGTTGCATGCTTACAAATT+GGG 0.356852 2:+42255619 None:intergenic
ACAAAGCCCTGAGCAAAATA+TGG 0.358101 2:-42255882 MsaT008734.1:CDS
CTGTGATCCCAATTGTGTTT+TGG 0.364566 2:-42267298 MsaT008734.1:CDS
CAAATTGGGGTGGAATGTTA+GGG 0.365016 2:+42255633 None:intergenic
GGGAAACACAAAAGACATTT+GGG 0.365339 2:+42255654 None:intergenic
ATGTCACTTGTTGAAGTATC+AGG 0.371137 2:+42269635 None:intergenic
CTCAGTTCTTTGAGACCTGC+AGG 0.373553 2:-42257033 MsaT008734.1:CDS
TACTTCAACAAGTGACATTT+CGG 0.375623 2:-42269630 MsaT008734.1:intron
GACGCAAGCAGCTGATCTTA+TGG 0.376309 2:-42256525 MsaT008734.1:intron
TATAGTGTATGTACCATCTT+TGG 0.378403 2:+42271348 None:intergenic
GGGGAAACACAAAAGACATT+TGG 0.381693 2:+42255653 None:intergenic
GGCTTGTATGACTTACTAAC+AGG 0.383155 2:-42256397 MsaT008734.1:CDS
GACTATGGAAGAATATATTA+AGG 0.403277 2:-42256824 MsaT008734.1:CDS
GAAACAATTGCCAATGCTAC+TGG 0.404039 2:+42256352 None:intergenic
CTGCGCCTTATGTGTGTATA+TGG 0.405284 2:+42269173 None:intergenic
ATTAGTCTGAGCTGGATGTT+GGG 0.407275 2:+42255469 None:intergenic
GAAGAACCAGAGGCTGCATT+GGG 0.410274 2:+42271501 None:intergenic
TGAATAGTCTGGAAATCAAA+AGG 0.411057 2:+42255713 None:intergenic
GCTTGACACCAAGGAATTGC+TGG 0.415655 2:-42257630 MsaT008734.1:CDS
TTGCTCAGGGCTTTGTTGCT+CGG 0.420020 2:+42255889 None:intergenic
TACTCGAGCATTAAAGTGTT+GGG 0.422529 2:+42256796 None:intergenic
AATATATTCGGTTCATCAAA+TGG 0.422925 2:+42255524 None:intergenic
CAATTGCTCCAGCAATTCCT+TGG 0.423489 2:+42257622 None:intergenic
ATCCTGGGCAAGCTGTTTGT+TGG 0.425111 2:-42270419 MsaT008734.1:CDS
TTCTTCCATAGTCGTCATAA+AGG 0.429251 2:+42256834 None:intergenic
AGCCATTGACATACGATTAC+AGG 0.429757 2:-42266828 MsaT008734.1:intron
TCCAAAGTCTAGGGCCCTGC+AGG 0.430223 2:+42257018 None:intergenic
GTTTCTTCCAGGCAAGTAGA+TGG 0.431444 2:-42266898 MsaT008734.1:intron
GCAACCTCCCAACCAGTTAC+CGG 0.433357 2:+42255920 None:intergenic
ACCTGCAGGGCCCTAGACTT+TGG 0.433933 2:-42257019 MsaT008734.1:CDS
CTTGACATGCTAAAACTTGA+GGG 0.440475 2:-42255806 MsaT008734.1:CDS
TGATTGGCGCCTGGACAAAA+AGG 0.440650 2:-42270388 MsaT008734.1:intron
ATGGCTCCTCTGCCTATGCT+AGG 0.442398 2:-42271473 MsaT008734.1:CDS
AATGTGCTAAACAAGCTGTT+GGG 0.442474 2:-42271172 MsaT008734.1:CDS
GGCGACGGCGGCAATATATT+CGG 0.443789 2:+42255512 None:intergenic
AATGAAGCAAGTCCGGTAAC+TGG 0.447030 2:-42255932 MsaT008734.1:CDS
TCCTCGTTAGTAAAAGGAAC+AGG 0.447278 2:+42269248 None:intergenic
CACTTCTCCAAAACACAATT+GGG 0.454841 2:+42267291 None:intergenic
ATCCGTCTGGAAGATCATCC+TGG 0.457358 2:-42270435 MsaT008734.1:CDS
GAGGATTATTATTAGAAACT+TGG 0.460139 2:+42255594 None:intergenic
GGCAGCATCAGTGATGGAGC+AGG 0.460139 2:+42271533 None:intergenic
AATTCAAGATTGACTTCACT+TGG 0.461493 2:-42269226 MsaT008734.1:CDS
TTTGTTGGAGACATTCTGAT+TGG 0.462721 2:-42270404 MsaT008734.1:CDS
GCCAGAAGCCGTGATCCGTC+TGG 0.463661 2:-42270448 MsaT008734.1:CDS
TAAATTCATCAATATCAAAC+AGG 0.464310 2:-42256987 MsaT008734.1:intron
GCATTGGCAATTGTTTCAAC+CGG 0.464839 2:-42256346 MsaT008734.1:intron
CAGACAAACACAAGAGTTTG+TGG 0.467296 2:-42271416 MsaT008734.1:CDS
CGGATCACGGCTTCTGGCCA+TGG 0.469588 2:+42270453 None:intergenic
ACAGTAGCCTCATTCTTGTC+TGG 0.470534 2:+42256551 None:intergenic
ACAATAGATGCAACTTTCAA+AGG 0.471065 2:-42267348 MsaT008734.1:CDS
AGAAGAACCAGAGGCTGCAT+TGG 0.472253 2:+42271500 None:intergenic
AGCAAGTCCGGTAACTGGTT+GGG 0.474701 2:-42255927 MsaT008734.1:CDS
ATTCGGTTCATCAAATGGAT+TGG 0.475005 2:+42255529 None:intergenic
ACACGCATTGGTGTATTTGC+TGG 0.475579 2:-42266871 MsaT008734.1:CDS
TTATATAATGAAGCTAATGC+TGG 0.475796 2:-42255782 MsaT008734.1:CDS
GGTTCCTCCTGCTGTTGTTG+AGG 0.477060 2:+42255575 None:intergenic
TTATAGAAAATCTGGAAGTC+AGG 0.477594 2:-42257144 MsaT008734.1:intron
CAAAAGGGTTGGAATTCACT+TGG 0.477984 2:+42255729 None:intergenic
TAAGCTGCTCAAAGGCTTGT+CGG 0.478644 2:-42267930 MsaT008734.1:CDS
TCTCGTTGCTGCTCCAAAGA+TGG 0.479820 2:-42271361 MsaT008734.1:intron
AATGATGGAGGTTACCAGAT+AGG 0.481410 2:-42255752 MsaT008734.1:CDS
AATTAGTCTGAGCTGGATGT+TGG 0.482654 2:+42255468 None:intergenic
GGGTAGGATCATGAATAGTC+TGG 0.483355 2:+42255702 None:intergenic
TTTGGAGCAGCAACGAGAAA+AGG 0.487671 2:+42271366 None:intergenic
TCAGAATAATTAGTCTGAGC+TGG 0.488139 2:+42255461 None:intergenic
TGATGAAAATCCAGTAGCAT+TGG 0.490145 2:-42256362 MsaT008734.1:CDS
GCTGGTCGTTCAATAGAAGT+TGG 0.492356 2:-42266853 MsaT008734.1:CDS
ATTATTATTAGAAACTTGGT+AGG 0.498289 2:+42255598 None:intergenic
GAAAGACATGGACAATAAGA+TGG 0.503086 2:-42269204 MsaT008734.1:CDS
GGCAAAGAGGAAGGAAGTAC+TGG 0.503732 2:-42256632 MsaT008734.1:CDS
GCAGGGCCCTAGACTTTGGA+AGG 0.505890 2:-42257015 MsaT008734.1:CDS
GAGACATTCTGATTGGCGCC+TGG 0.506351 2:-42270397 MsaT008734.1:CDS
GATTCAGTATGCTCTCTCAA+TGG 0.507960 2:-42257450 MsaT008734.1:intron
CACCACCATATACACACATA+AGG 0.513706 2:-42269178 MsaT008734.1:CDS
TGATGAGAATGAAGCAAGTC+CGG 0.515942 2:-42255939 MsaT008734.1:CDS
TATATAATGAAGCTAATGCT+GGG 0.517921 2:-42255781 MsaT008734.1:CDS
CCATCACCATGCTAGATTCA+GGG 0.519666 2:-42271587 None:intergenic
TAATAATCCTCAACAACAGC+AGG 0.522470 2:-42255582 MsaT008734.1:CDS
GAATGTGCTAAACAAGCTGT+TGG 0.523121 2:-42271173 MsaT008734.1:CDS
GCCTCTGGTTCTTCTGACAA+TGG 0.523366 2:-42271492 MsaT008734.1:CDS
ACGAGAAAAGGAAGAGATTG+AGG 0.524595 2:+42271378 None:intergenic
ATTTCGGCTACTTGATTCCA+AGG 0.527477 2:-42257579 MsaT008734.1:intron
CACAATTGGGATCACAGCTA+TGG 0.531828 2:+42267304 None:intergenic
AGTGATGTAGATGATGATGT+TGG 0.532334 2:-42268961 MsaT008734.1:CDS
GAATAGTCTGGAAATCAAAA+GGG 0.534615 2:+42255714 None:intergenic
TACCCAATATAACATGGCAT+TGG 0.535634 2:-42255684 MsaT008734.1:CDS
GCTGTTGAAACAATTGAGAA+AGG 0.536186 2:-42267696 MsaT008734.1:CDS
GGTAGGTCTTCAAAATAAGC+AGG 0.539237 2:-42255837 MsaT008734.1:CDS
TGGCTCCTCTGCCTATGCTA+GGG 0.540628 2:-42271472 MsaT008734.1:CDS
ATGGAGCAGGGTGCCGAGAG+AGG 0.540764 2:+42271546 None:intergenic
GTACTCGAGCATTAAAGTGT+TGG 0.541151 2:+42256795 None:intergenic
GAACATAACAGCTCATCCTC+AGG 0.542594 2:+42271227 None:intergenic
TACCTGTAATCGTATGTCAA+TGG 0.542756 2:+42266826 None:intergenic
ATAATTGAGTATATTGGAGA+AGG 0.543225 2:-42267666 MsaT008734.1:intron
AGTCTGGAAATCAAAAGGGT+TGG 0.544819 2:+42255718 None:intergenic
CAGGGCCCTAGACTTTGGAA+GGG 0.545587 2:-42257014 MsaT008734.1:CDS
AATGCTGGGGTACAAAATGA+TGG 0.545791 2:-42255767 MsaT008734.1:CDS
GAGCTGTTATGTTCTGTTCG+TGG 0.546935 2:-42271218 MsaT008734.1:CDS
ATTTGTGCAATTTGGTGCAG+AGG 0.547582 2:-42261507 MsaT008734.1:intron
ACTTGACATGCTAAAACTTG+AGG 0.547867 2:-42255807 MsaT008734.1:CDS
GCCTCATTCTTGTCTGGAGA+AGG 0.549084 2:+42256557 None:intergenic
ATGATCTTCCAGACGGATCA+CGG 0.549967 2:+42270440 None:intergenic
AAGCAAGTCCGGTAACTGGT+TGG 0.550238 2:-42255928 MsaT008734.1:CDS
GGTGCCGAGAGAGGCGGAGA+CGG 0.550529 2:+42271555 None:intergenic
AGACAAACACAAGAGTTTGT+GGG 0.555900 2:-42271415 MsaT008734.1:CDS
CTCCAACAAACAGCTTGCCC+AGG 0.560922 2:+42270417 None:intergenic
GAAGAGATTGAGGATCTGTA+AGG 0.562216 2:+42271388 None:intergenic
GGTTGCATGCTTACAAATTG+GGG 0.562791 2:+42255620 None:intergenic
AGGGCCCTAGACTTTGGAAG+GGG 0.565324 2:-42257013 MsaT008734.1:CDS
GTTGCGGTGTGTCCGTTGCA+CGG 0.565898 2:-42270499 MsaT008734.1:CDS
TCAGTTCTTTGAGACCTGCA+GGG 0.567400 2:-42257032 MsaT008734.1:CDS
AGCACCGTCTCCGCCTCTCT+CGG 0.571611 2:-42271559 MsaT008734.1:CDS
CTTATGTGTGTATATGGTGG+TGG 0.571669 2:+42269179 None:intergenic
TATCAGAATGGCAAAGAGGA+AGG 0.574835 2:-42256641 MsaT008734.1:intron
GCAGCATCAGTGATGGAGCA+GGG 0.576243 2:+42271534 None:intergenic
GAGCAGGGTGCCGAGAGAGG+CGG 0.578519 2:+42271549 None:intergenic
CCACCATGCTTTGTGTCCTG+AGG 0.578951 2:-42271243 MsaT008734.1:CDS
ATAGTCGTCATAAAGGAAGC+AGG 0.582101 2:+42256841 None:intergenic
TCCGTCTGGAAGATCATCCT+GGG 0.584179 2:-42270434 MsaT008734.1:CDS
TGCATGCTTACAAATTGGGG+TGG 0.595548 2:+42255623 None:intergenic
GCCATTGTCAGAAGAACCAG+AGG 0.595851 2:+42271491 None:intergenic
TTATTATTAGAAACTTGGTA+GGG 0.595952 2:+42255599 None:intergenic
TGACTTCACTTGGAAAGACA+TGG 0.596141 2:-42269216 MsaT008734.1:CDS
GTGATGTAGATGATGATGTT+GGG 0.596814 2:-42268960 MsaT008734.1:CDS
TTCCCAAAAGCTTGACACCA+AGG 0.597684 2:-42257639 MsaT008734.1:CDS
TGCAGTAGCAGAGAATAAAG+AGG 0.600894 2:-42255858 MsaT008734.1:CDS
GCTCTAATGATTGTGTATGC+AGG 0.602774 2:-42268915 MsaT008734.1:intron
CCTCTTCAAAACCCTAGCAT+AGG 0.606642 2:+42271461 None:intergenic
CAAAACCCTAGCATAGGCAG+AGG 0.607585 2:+42271467 None:intergenic
AGAGCAAGTAGAACTGCAGT+TGG 0.609503 2:+42268933 None:intergenic
TATGGAAAGCCACCGTGCAA+CGG 0.611226 2:+42270487 None:intergenic
AGCAAAAGTTGAATTTGTTG+CGG 0.611628 2:-42270515 MsaT008734.1:CDS
GGGCCCTAGACTTTGGAAGG+GGG 0.613551 2:-42257012 MsaT008734.1:CDS
TTAGTCTGAGCTGGATGTTG+GGG 0.613994 2:+42255470 None:intergenic
GTTTGTTGCTGTAGGCAGAG+AGG 0.614785 2:-42257060 MsaT008734.1:intron
TCCTTCTCCAGACAAGAATG+AGG 0.616860 2:-42256558 MsaT008734.1:CDS
ATGTGCTAAACAAGCTGTTG+GGG 0.619516 2:-42271171 MsaT008734.1:CDS
CATCCTCAGGACACAAAGCA+TGG 0.619888 2:+42271240 None:intergenic
AAAGAAGATGCAACATGTGT+AGG 0.623598 2:-42256608 MsaT008734.1:CDS
GTAGCAGAGAATAAAGAGGT+AGG 0.624479 2:-42255854 MsaT008734.1:CDS
AAATTGGGGTGGAATGTTAG+GGG 0.625670 2:+42255634 None:intergenic
AATGCCATGTTATATTGGGT+AGG 0.627357 2:+42255686 None:intergenic
AAGTCCGGTAACTGGTTGGG+AGG 0.629611 2:-42255924 MsaT008734.1:CDS
TGCAATAACTGTTAGAGTGG+TGG 0.630915 2:-42257313 MsaT008734.1:CDS
GCCCAGGATGATCTTCCAGA+CGG 0.632053 2:+42270433 None:intergenic
GGCACAACTGAGGTTGAAGA+CGG 0.634199 2:+42255491 None:intergenic
AGAACCAGAGGCTGCATTGG+GGG 0.634435 2:+42271503 None:intergenic
ACTGAGGTTGAAGACGGCGA+CGG 0.638369 2:+42255497 None:intergenic
GAGGTTGAAGACGGCGACGG+CGG 0.639606 2:+42255500 None:intergenic
TAAGTTCCCTGAATCTAGCA+TGG 0.640327 2:+42271581 None:intergenic
CGCCTTATGTGTGTATATGG+TGG 0.642355 2:+42269176 None:intergenic
TCAATGCATAAGCTGCTCAA+AGG 0.643718 2:-42267938 MsaT008734.1:CDS
TAATCCTCAACAACAGCAGG+AGG 0.645441 2:-42255579 MsaT008734.1:CDS
TATGGAAGAATATATTAAGG+AGG 0.652300 2:-42256821 MsaT008734.1:CDS
ATAAGATCAGCTGCTTGCGT+CGG 0.658151 2:+42256527 None:intergenic
TTTAATGCTCGAGTACGAAG+TGG 0.658441 2:-42256788 MsaT008734.1:intron
TGATCCTACCCAATATAACA+TGG 0.662334 2:-42255690 MsaT008734.1:CDS
ATGCACTAATCGCATCATCA+CGG 0.662766 2:+42257174 None:intergenic
GTAGATGGTGAAACACGCAT+TGG 0.665236 2:-42266883 MsaT008734.1:CDS
ATATAATGAAGCTAATGCTG+GGG 0.666190 2:-42255780 MsaT008734.1:CDS
AAGAACCAGAGGCTGCATTG+GGG 0.666190 2:+42271502 None:intergenic
TCCATATTAAATGTGCACCA+TGG 0.670670 2:-42270470 MsaT008734.1:CDS
TGTTGCAATAACTGTTAGAG+TGG 0.671738 2:-42257316 MsaT008734.1:CDS
AGTGGTGGAACTACTTGACA+AGG 0.677271 2:-42257298 MsaT008734.1:intron
GCTGGGGTACAAAATGATGG+AGG 0.686784 2:-42255764 MsaT008734.1:CDS
TTATTATCAGAATGGCAAAG+AGG 0.693133 2:-42256645 MsaT008734.1:intron
GTCGTCATAAAGGAAGCAGG+AGG 0.701945 2:+42256844 None:intergenic
GGAAACACAAAAGACATTTG+GGG 0.714717 2:+42255655 None:intergenic
TGGATGTTGGGGCACAACTG+AGG 0.715876 2:+42255481 None:intergenic
CCTCAGGACACAAAGCATGG+TGG 0.717589 2:+42271243 None:intergenic
GAAACACAAAAGACATTTGG+GGG 0.730604 2:+42255656 None:intergenic
GCGGTGTGTCCGTTGCACGG+TGG 0.789830 2:-42270496 MsaT008734.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 42255457 42271601 42255457 ID=MsaG008734
Chr2 mRNA 42255457 42271601 42255457 ID=MsaT008734.1;Parent=MsaG008734
Chr2 exon 42255457 42255983 42255457 ID=MsaT008734.1.exon20;Parent=MsaT008734.1
Chr2 CDS 42255457 42255983 42255457 ID=cds.MsaT008734.1;Parent=MsaT008734.1
Chr2 exon 42256347 42256419 42256347 ID=MsaT008734.1.exon19;Parent=MsaT008734.1
Chr2 CDS 42256347 42256419 42256347 ID=cds.MsaT008734.1;Parent=MsaT008734.1
Chr2 exon 42256526 42256657 42256526 ID=MsaT008734.1.exon18;Parent=MsaT008734.1
Chr2 CDS 42256526 42256657 42256526 ID=cds.MsaT008734.1;Parent=MsaT008734.1
Chr2 exon 42256789 42256866 42256789 ID=MsaT008734.1.exon17;Parent=MsaT008734.1
Chr2 CDS 42256789 42256866 42256789 ID=cds.MsaT008734.1;Parent=MsaT008734.1
Chr2 exon 42256988 42257068 42256988 ID=MsaT008734.1.exon16;Parent=MsaT008734.1
Chr2 CDS 42256988 42257068 42256988 ID=cds.MsaT008734.1;Parent=MsaT008734.1
Chr2 exon 42257145 42257210 42257145 ID=MsaT008734.1.exon15;Parent=MsaT008734.1
Chr2 CDS 42257145 42257210 42257145 ID=cds.MsaT008734.1;Parent=MsaT008734.1
Chr2 exon 42257299 42257364 42257299 ID=MsaT008734.1.exon14;Parent=MsaT008734.1
Chr2 CDS 42257299 42257364 42257299 ID=cds.MsaT008734.1;Parent=MsaT008734.1
Chr2 exon 42257451 42257501 42257451 ID=MsaT008734.1.exon13;Parent=MsaT008734.1
Chr2 CDS 42257451 42257501 42257451 ID=cds.MsaT008734.1;Parent=MsaT008734.1
Chr2 exon 42257580 42257666 42257580 ID=MsaT008734.1.exon12;Parent=MsaT008734.1
Chr2 CDS 42257580 42257666 42257580 ID=cds.MsaT008734.1;Parent=MsaT008734.1
Chr2 exon 42261508 42261529 42261508 ID=MsaT008734.1.exon11;Parent=MsaT008734.1
Chr2 CDS 42261508 42261529 42261508 ID=cds.MsaT008734.1;Parent=MsaT008734.1
Chr2 exon 42266829 42266909 42266829 ID=MsaT008734.1.exon10;Parent=MsaT008734.1
Chr2 CDS 42266829 42266909 42266829 ID=cds.MsaT008734.1;Parent=MsaT008734.1
Chr2 exon 42267291 42267384 42267291 ID=MsaT008734.1.exon9;Parent=MsaT008734.1
Chr2 CDS 42267291 42267384 42267291 ID=cds.MsaT008734.1;Parent=MsaT008734.1
Chr2 exon 42267667 42267745 42267667 ID=MsaT008734.1.exon8;Parent=MsaT008734.1
Chr2 CDS 42267667 42267745 42267667 ID=cds.MsaT008734.1;Parent=MsaT008734.1
Chr2 exon 42267912 42267963 42267912 ID=MsaT008734.1.exon7;Parent=MsaT008734.1
Chr2 CDS 42267912 42267963 42267912 ID=cds.MsaT008734.1;Parent=MsaT008734.1
Chr2 exon 42268916 42269009 42268916 ID=MsaT008734.1.exon6;Parent=MsaT008734.1
Chr2 CDS 42268916 42269009 42268916 ID=cds.MsaT008734.1;Parent=MsaT008734.1
Chr2 exon 42269174 42269288 42269174 ID=MsaT008734.1.exon5;Parent=MsaT008734.1
Chr2 CDS 42269174 42269288 42269174 ID=cds.MsaT008734.1;Parent=MsaT008734.1
Chr2 exon 42269631 42269657 42269631 ID=MsaT008734.1.exon4;Parent=MsaT008734.1
Chr2 CDS 42269631 42269657 42269631 ID=cds.MsaT008734.1;Parent=MsaT008734.1
Chr2 exon 42270389 42270553 42270389 ID=MsaT008734.1.exon3;Parent=MsaT008734.1
Chr2 CDS 42270389 42270553 42270389 ID=cds.MsaT008734.1;Parent=MsaT008734.1
Chr2 exon 42271136 42271282 42271136 ID=MsaT008734.1.exon2;Parent=MsaT008734.1
Chr2 CDS 42271136 42271282 42271136 ID=cds.MsaT008734.1;Parent=MsaT008734.1
Chr2 exon 42271362 42271601 42271362 ID=MsaT008734.1.exon1;Parent=MsaT008734.1
Chr2 CDS 42271362 42271601 42271362 ID=cds.MsaT008734.1;Parent=MsaT008734.1
Gene Sequence

>MsaT008734.1

ATGCTAGATTCAGGGAACTTAGCACCGTCTCCGCCTCTCTCGGCACCCTGCTCCATCACTGATGCTGCCCCCGCTGCCCCCAATGCAGCCTCTGGTTCTTCTGACAATGGCTCCTCTGCCTATGCTAGGGTTTTGAAGAGGACTCGAGGTTCTCTCCGTAAAACAGACAAACACAAGAGTTTGTGGGATCGCCTTACAGATCCTCAATCTCTTCCTTTTCTCGTTGCTGCTCCAAAGATGGTTGAATGTTGTTTCTGCCACCATGCTTTGTGTCCTGAGGATGAGCTGTTATGTTCTGTTCGTGGATGTGCTGCTCGCTATCATAAAGAATGTGCTAAACAAGCTGTTGGGGTTTCAAATCTCAAGAAATTCAAGTGTCCGCAACATGTGTGCTTCATTTGCAAGCAAAAGTTGAATTTGTTGCGGTGTGTCCGTTGCACGGTGGCTTTCCATATTAAATGTGCACCATGGCCAGAAGCCGTGATCCGTCTGGAAGATCATCCTGGGCAAGCTGTTTGTTGGAGACATTCTGATTGGCGCCTGGACAAAAAGCCTGATACTTCAACAAGTGACATTTCGGAAGTATTTTGTCGTTTGCCTGTTCCTTTTACTAACGAGGAATTCAAGATTGACTTCACTTGGAAAGACATGGACAATAAGATGGAGCCACCACCATATACACACATAAGGCGCAATATGTACCTAGTGAAGAAAAAGCGTAGTGATGTAGATGATGATGTTGGGTGCACCAACTGCAGTTCTACTTGCTCTAATGATTGTGTATGCAGGGTTCAATGCATAAGCTGCTCAAAGGCTTGTCGGTGCTCTGAAAATTGTAATACTGAGTTTTGTGGATGGGGAGTTGAGGCTGTTGAAACAATTGAGAAAGGAGAGTTTATAATTGAGTATATTGGAGAAGATTCGAAAGAATTCACAATAGATGCAACTTTCAAAGGAAATTCATCACGCTTTTTAAACCATAGCTGTGATCCCAATTGTGTTTTGGAGAAGTGGCAAGTAGATGGTGAAACACGCATTGGTGTATTTGCTGGTCGTTCAATAGAAGTTGGAGAGCCATTGACATACGATTACAGATTTGTGCAATTTGGTGCAGAGAGCAATTCCCAAAAGCTTGACACCAAGGAATTGCTGGAGCAATTGCCAGCCCTACAAAATCTTCTATTTCGGCTACTTGATTCCAAGCCAGGGGGTGCGTCTGCTTTTAATCGTTTGATTCAGTATGCTCTCTCAATGATTGCTGGGGAAAGTGTTAAAATATATGTTGCAATAACTGTTAGAGTGGTGGAACTACTTGACAAGTTTTTCGAGATGAACCGTGATGATGCGATTAGTGCATTGAAGATTTATAGAAAATCTGGAAGTCAGGCAGAGAGGTTATCTCAGTTCTTTGAGACCTGCAGGGCCCTAGACTTTGGAAGGGGGCATAAATTCATCAATATCAAACAGCCTCCTGCTTCCTTTATGACGACTATGGAAGAATATATTAAGGAGGCTCCCAACACTTTAATGCTCGAGTACGAAGTGAATGGCAAAGAGGAAGGAAGTACTGGTAAAGAAGATGCAACATGTGTAGGTGATTTGTTGAGTGTAGATGAGTCAGATCCTTCTCCAGACAAGAATGAGGCTACTGTACCGACGCAAGCAGCTGATCTTATGGGCTTGTATGACTTACTAACAGGTGCATCTGAATTTGATGAAAATCCAGTAGCATTGGCAATTGTTTCAACCGAAAATTCTTTAAATTCCAACAATGATGAGAATGAAGCAAGTCCGGTAACTGGTTGGGAGGTTGCACTTTTTACCGAGCAACAAAGCCCTGAGCAAAATATGGTTGCAGTAGCAGAGAATAAAGAGGTAGGTCTTCAAAATAAGCAGGATGACGAACTTGACATGCTAAAACTTGAGGGTTTATATAATGAAGCTAATGCTGGGGTACAAAATGATGGAGGTTACCAGATAGGCCAAGTGAATTCCAACCCTTTTGATTTCCAGACTATTCATGATCCTACCCAATATAACATGGCATTGGAAGTACCCCCAAATGTCTTTTGTGTTTCCCCTAACATTCCACCCCAATTTGTAAGCATGCAACCCTACCAAGTTTCTAATAATAATCCTCAACAACAGCAGGAGGAACCATTCACAATGATTAAAAAATCAACCAATCCATTTGATGAACCGAATATATTGCCGCCGTCGCCGTCTTCAACCTCAGTTGTGCCCCAACATCCAGCTCAGACTAATTATTCTGATTAG

Protein sequence

>MsaT008734.1

MLDSGNLAPSPPLSAPCSITDAAPAAPNAASGSSDNGSSAYARVLKRTRGSLRKTDKHKSLWDRLTDPQSLPFLVAAPKMVECCFCHHALCPEDELLCSVRGCAARYHKECAKQAVGVSNLKKFKCPQHVCFICKQKLNLLRCVRCTVAFHIKCAPWPEAVIRLEDHPGQAVCWRHSDWRLDKKPDTSTSDISEVFCRLPVPFTNEEFKIDFTWKDMDNKMEPPPYTHIRRNMYLVKKKRSDVDDDVGCTNCSSTCSNDCVCRVQCISCSKACRCSENCNTEFCGWGVEAVETIEKGEFIIEYIGEDSKEFTIDATFKGNSSRFLNHSCDPNCVLEKWQVDGETRIGVFAGRSIEVGEPLTYDYRFVQFGAESNSQKLDTKELLEQLPALQNLLFRLLDSKPGGASAFNRLIQYALSMIAGESVKIYVAITVRVVELLDKFFEMNRDDAISALKIYRKSGSQAERLSQFFETCRALDFGRGHKFINIKQPPASFMTTMEEYIKEAPNTLMLEYEVNGKEEGSTGKEDATCVGDLLSVDESDPSPDKNEATVPTQAADLMGLYDLLTGASEFDENPVALAIVSTENSLNSNNDENEASPVTGWEVALFTEQQSPEQNMVAVAENKEVGLQNKQDDELDMLKLEGLYNEANAGVQNDGGYQIGQVNSNPFDFQTIHDPTQYNMALEVPPNVFCVSPNIPPQFVSMQPYQVSNNNPQQQQEEPFTMIKKSTNPFDEPNILPPSPSSTSVVPQHPAQTNYSD*