AlfalfaGEDB | MsaG008842

M. sativa ssp. caerulea / MsaG008842

KEGG: K14494
GO: -
PFAM: PF12041.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008842	XP_039686508.1	98.012	503	8	1	1	503	1	501	0.0	1018

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008842	sp\|Q8S4W7\|GAI1_VITVI	47.406	559	208	10	8	489	26	575	3.19e-164	480

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008842	tr\|A0A396J7P5\|A0A396J7P5_MEDTR	98.012	503	8	1	1	503	1	501	0.0	1018

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TFs/TRs:

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Gene ID	Type	Classification
MsaG008842	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000202	MsaG008842	0.810602	1.818671e-50	3.151677e-48
MsaG000286	MsaG008842	0.812968	5.587434e-51	1.026415e-48
MsaG000792	MsaG008842	0.804839	3.009644e-49	4.545816e-47
MsaG001294	MsaG008842	0.841500	8.489145e-58	3.474433e-55
MsaG001373	MsaG008842	0.862753	8.038498e-64	6.947866e-61
MsaG001490	MsaG008842	0.832661	1.506100e-55	4.707383e-53
MsaG001767	MsaG008842	0.804746	3.146504e-49	4.742217e-47
MsaG002114	MsaG008842	0.826326	5.135224e-54	1.340040e-51
MsaG002213	MsaG008842	0.826532	4.587979e-54	1.204151e-51
MsaG002636	MsaG008842	0.809544	3.065500e-50	5.177854e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008842	MtrunA17_Chr2g0306641	98.012	503	8	1	1	503	1	501	0.0	1018
MsaG008842	MtrunA17_Chr8g0376381	51.282	507	200	13	16	489	30	522	1.91e-163	473
MsaG008842	MtrunA17_Chr3g0110971	47.310	539	208	12	16	489	60	587	6.49e-159	464
MsaG008842	MtrunA17_Chr7g0224271	42.356	399	189	10	117	489	290	673	2.59e-92	295
MsaG008842	MtrunA17_Chr4g0076091	33.183	443	262	11	67	488	113	542	8.22e-69	229
MsaG008842	MtrunA17_Chr2g0319091	36.735	392	221	10	116	488	195	578	6.24e-67	226
MsaG008842	MtrunA17_Chr4g0057291	35.897	390	220	10	121	491	286	664	8.42e-66	224
MsaG008842	MtrunA17_Chr3g0101141	38.539	397	203	14	116	489	164	542	1.28e-65	221
MsaG008842	MtrunA17_Chr5g0445331	36.020	397	217	13	116	489	150	532	1.65e-65	221
MsaG008842	MtrunA17_Chr8g0357601	35.411	401	215	13	119	493	174	556	1.92e-65	221

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008842	AT1G14920.1	49.126	515	209	12	16	489	27	529	1.92e-162	471
MsaG008842	AT3G03450.1	47.554	511	217	12	19	489	46	545	7.38e-151	442
MsaG008842	AT1G66350.1	49.495	495	210	15	16	489	31	506	3.43e-148	434
MsaG008842	AT2G01570.1	55.440	386	160	6	108	489	204	581	1.91e-144	427
MsaG008842	AT2G01570.1	53.846	65	29	1	17	80	44	108	3.59e-13	72.4
MsaG008842	AT5G17490.1	46.169	496	235	11	15	489	32	516	4.45e-143	421
MsaG008842	AT5G48150.1	36.203	395	220	9	114	489	109	490	4.51e-66	221
MsaG008842	AT5G48150.4	36.203	395	220	9	114	489	109	490	4.51e-66	221
MsaG008842	AT5G48150.2	36.203	395	220	9	114	489	109	490	4.51e-66	221
MsaG008842	AT5G48150.3	36.203	395	220	9	114	489	109	490	4.51e-66	221

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Find 138 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCGAATCTAACGTTAA+CGG	0.563777	2:+47888935	None:intergenic
AACGTTAGATTCGCCTTTCG+CGG	0.429000	2:-47888930	MsaT008842.1:CDS
AAGAAGATTGGTGGTGGTGG+TGG	0.451641	2:+47889486	None:intergenic
AAGCGAACCATAACGAGAAC+GGG	0.473338	2:-47888707	MsaT008842.1:CDS
AAGGAGCGGCTCGGTAAAGC+CGG	0.483410	2:-47888504	MsaT008842.1:CDS
AAGGGAGCTTGACTTTGGGT+TGG	0.530891	2:-47888386	MsaT008842.1:CDS
AAGTGTGCGAATTTGAGGTA+TGG	0.594726	2:+47889182	None:intergenic
AATCAAGGGAGCTTGACTTT+GGG	0.434762	2:-47888390	MsaT008842.1:CDS
ACAAAGAGAGATATGCAACG+TGG	0.806079	2:-47888580	MsaT008842.1:CDS
ACCCAATTGCCAATGTCGGA+GGG	0.609324	2:+47889602	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	47888305	47889816	47888305	ID=MsaG008842
Chr2	mRNA	47888305	47889816	47888305	ID=MsaT008842.1;Parent=MsaG008842
Chr2	exon	47888305	47889816	47888305	ID=MsaT008842.1.exon1;Parent=MsaT008842.1
Chr2	CDS	47888305	47889816	47888305	ID=cds.MsaT008842.1;Parent=MsaT008842.1

Gene Sequence

>MsaT008842.1

ATGGAGATAGTTTCAGATTCTTCTTCCCCATCAAAGACAAAAGACATCGACGGCCTCCTCGCCAATGTCGGCTACAAAGTCAGATCATCTGAGCTACATCAAGTAGCTCAGAATCTCGAACGATTAGAAAGCGCGATTGTGAACTCATCGAGCGACATTTCTCAATTTGCTTCGGATACAGTCCACTATGATCCCTCCGACATTGGCAATTGGGTGGACAATCTCCTCTCCGAATTTGACCACACGGCCTCTTTACCCTACGATTTCTCTGAACTTCCAGATCTCTCAGCACCGCCGCCACAACACCACCACCACCACCACCAATCTTCTTCGACAGTTAATACTGTCGAAGAAGATTCTGCAATAAAACTCGTCCACATGCTGATGACCTGTGCAGATTCCGTGCAACGTGGTAATCTTCCATTGGCTGGCTCGTTAATCGAAGGCATGCAAGGGTTGTTAGCAAACATGAACACCATCTCCGGCATCGGAAAAGTCGCCGGATACTTCATCGACGCTTTGAACCGTCGCATTTTCGGTCAAAGCAATGTTAGCCACCAAGTTTCTCTTTACGAGAACGATGTTCTTTACCATCACTACTACGAAGCTTGTCCATACCTCAAATTCGCACACTTCACCGCAAATCAAGCTATACTCGAAGCTTTCAACGGCCACGATTGTGTCCACGTCATTGATTTCAACCTCATGCATGGTCTTCAATGGCCAGCGTTAATTCAAGCTCTTGCTCTTCGTCCTGGAGGACCTCCGTTTCTCCGGCTTACCGGCATTGGTCCGCCGTCGCCGGATGACCGTGACAACCTCCGTGAAATCGGACTCCGTCTCGCTGAACTTGCACGCTCCGTTAACGTTAGATTCGCCTTTCGCGGCGTTGCGGCGTGGCGGCTTGAAGATGTAAAGCCATGGATGCTTCAGGTGAGTTCTAAAGAAGCTGTGGCGGTTAATTCTATTTTTCAGCTTCATCGTCTTCTCGGATCTGAATCCGACCCGAATTCTCATTCGGGTATTGAAATGGTTTTGGGTTGGATCCGGAGTTTTAATCCGAAAATCGTTACAGTTGTTGAACAAGAAGCGAACCATAACGAGAACGGGTTTATGGAACGGTTCACGGAGGCATTGCATTATTACTCGACCGTTTTTGACTCGCTTGAAGCGTGTCCGGTTGAACCGGATAAAGCTATGGCGGAGATGTATTTACAAAGAGAGATATGCAACGTGGTGTGCTGCGAGGGACCGGCTCGAGTTGAGAGACATGAACCGCTGGTTAAGTGGAAGGAGCGGCTCGGTAAAGCCGGGTTCAGACCGTTGCATTTGGGTTCGAATGCTTTTAAGCAAGCGAGTATGTTGTTGACTCTGTTTTCAGCGGAGGGTTATTGCGTGGAAGAGAATCAAGGGAGCTTGACTTTGGGTTGGCATAGCCGGCCTTTGATTGCGGCTTCGGCTTGGCAAGCTGTGCCTTTGTTAGATGCTGAAACACTGCGTTTTGATTGTTGA

Protein sequence

>MsaT008842.1

MEIVSDSSSPSKTKDIDGLLANVGYKVRSSELHQVAQNLERLESAIVNSSSDISQFASDTVHYDPSDIGNWVDNLLSEFDHTASLPYDFSELPDLSAPPPQHHHHHHQSSSTVNTVEEDSAIKLVHMLMTCADSVQRGNLPLAGSLIEGMQGLLANMNTISGIGKVAGYFIDALNRRIFGQSNVSHQVSLYENDVLYHHYYEACPYLKFAHFTANQAILEAFNGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPFLRLTGIGPPSPDDRDNLREIGLRLAELARSVNVRFAFRGVAAWRLEDVKPWMLQVSSKEAVAVNSIFQLHRLLGSESDPNSHSGIEMVLGWIRSFNPKIVTVVEQEANHNENGFMERFTEALHYYSTVFDSLEACPVEPDKAMAEMYLQREICNVVCCEGPARVERHEPLVKWKERLGKAGFRPLHLGSNAFKQASMLLTLFSAEGYCVEENQGSLTLGWHSRPLIAASAWQAVPLLDAETLRFDC*