AlfalfaGEDB | MsaG008930

M. sativa ssp. caerulea / MsaG008930

KEGG: -
GO: GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008930	KEH42071.1	91.324	219	10	5	1	215	274	487	7.99e-129	382

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008930	sp\|Q9SA82\|BH052_ARATH	37.273	220	119	6	3	208	48	262	5.84e-28	109

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008930	tr\|A0A072VKB3\|A0A072VKB3_MEDTR	91.324	219	10	5	1	215	274	487	3.82e-129	382

TFs/TRs:

Gene ID	Type	Classification
MsaG008930	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008930	MtrunA17_Chr2g0311101	88.636	220	20	3	1	215	91	310	1.92e-124	354
MsaG008930	MtrunA17_Chr1g0179061	87.838	148	10	4	1	144	97	240	1.65e-83	248
MsaG008930	MtrunA17_Chr8g0384141	58.491	53	22	0	85	137	125	177	4.92e-13	66.2
MsaG008930	MtrunA17_Chr3g0134001	58.491	53	22	0	85	137	182	234	1.62e-12	65.1
MsaG008930	MtrunA17_Chr7g0243041	40.625	64	38	0	85	148	37	100	1.34e-11	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG008930	AT1G30670.1	37.273	220	119	6	3	208	48	262	5.93e-29	109
MsaG008930	AT2G34820.1	40.000	225	101	7	2	208	81	289	2.93e-26	102
MsaG008930	AT3G21330.1	60.377	53	21	0	85	137	280	332	2.05e-13	68.6
MsaG008930	AT5G01305.1	37.500	96	51	2	85	177	48	137	1.09e-12	64.3
MsaG008930	AT4G00120.1	52.830	53	25	0	85	137	123	175	2.51e-11	60.8

Find 38 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATCATTATGATTGCTCAATT+TGG	0.191234	2:-49958855	None:intergenic
AGTTGGAATGCTTCAACTTA+TGG	0.195386	2:+49957942	MsaT008930.1:CDS
ATCTCTGCTGTGTTCATCTT+TGG	0.238213	2:-49957877	None:intergenic
AATTTGGTGACAAACTCTTT+TGG	0.289383	2:-49958839	None:intergenic
CCTCATAGTATAGCAGCTTT+TGG	0.317037	2:-49957615	None:intergenic
TACAATTTCTCTTGAACAAA+TGG	0.348402	2:-49958794	None:intergenic
ATCAAAACCTACCATCCTTA+AGG	0.361760	2:+49958883	MsaT008930.1:CDS
AAATAACACTATTCTTGCTT+TGG	0.365183	2:-49958944	None:intergenic
TCAAAGGAAGCAAAAGGGTT+AGG	0.369513	2:-49957709	None:intergenic
TTGATTATTTCAGGAAGAAA+AGG	0.418378	2:+49958730	MsaT008930.1:intron
GAGCTAGGGAAGTTGGTTCC+TGG	0.426916	2:+49957850	MsaT008930.1:CDS
CAAGCTGTTTCAGACCCTTA+AGG	0.427556	2:-49958898	None:intergenic
GACACAAGAGCTAGGGAAGT+TGG	0.431491	2:+49957843	MsaT008930.1:CDS
AAAATGAAATCTTCCTCAGT+TGG	0.434948	2:-49957562	None:intergenic
TCAAAACCTACCATCCTTAA+GGG	0.456430	2:+49958884	MsaT008930.1:CDS
AAGGGTCTGAAACAGCTTGT+TGG	0.460418	2:+49958902	MsaT008930.1:CDS
CAAAGGAAGCAAAAGGGTTA+GGG	0.461232	2:-49957708	None:intergenic
TCTGTCTCAAAGGAAGCAAA+AGG	0.462646	2:-49957715	None:intergenic
TTGTGTAGATCTTCACTTGG+AGG	0.465635	2:-49958758	None:intergenic
AAATGAAATCTTCCTCAGTT+GGG	0.470627	2:-49957561	None:intergenic
GTTCAATGTGAGAAGAAAGT+TGG	0.488552	2:+49957757	MsaT008930.1:CDS
TGTAGATCTTCACTTGGAGG+AGG	0.494574	2:-49958755	None:intergenic
GTGTTCATCTTTGGTCCACC+AGG	0.499817	2:-49957868	None:intergenic
AGAGTATCGCGGCTCGAGAA+AGG	0.514420	2:+49957800	MsaT008930.1:CDS
ACTGAGAAGACACAAGAGCT+AGG	0.516284	2:+49957835	MsaT008930.1:CDS
CCAAAAGCTGCTATACTATG+AGG	0.553268	2:+49957615	MsaT008930.1:CDS
AGTTTGTGTAGATCTTCACT+TGG	0.558027	2:-49958761	None:intergenic
TCGCGGCTCGAGAAAGGAGA+AGG	0.564993	2:+49957806	MsaT008930.1:CDS
GTGAGAAGAAAGTTGGTGAA+AGG	0.566992	2:+49957764	MsaT008930.1:CDS
AAGTTTCTTCAAGCTCAAGT+TGG	0.567049	2:+49957925	MsaT008930.1:CDS
GAGTTCAAAAGCTCTTGTTG+TGG	0.567814	2:-49957652	None:intergenic
ACTTATGGAAACATTTAGCA+AGG	0.569731	2:+49957957	MsaT008930.1:CDS
TTCAGACCCTTAAGGATGGT+AGG	0.578594	2:-49958890	None:intergenic
CTGAGAAGACACAAGAGCTA+GGG	0.585998	2:+49957836	MsaT008930.1:CDS
CTGTCTCAAAGGAAGCAAAA+GGG	0.598011	2:-49957714	None:intergenic
CTAGGGAAGTTGGTTCCTGG+TGG	0.615915	2:+49957853	MsaT008930.1:CDS
CTGTTTCAGACCCTTAAGGA+TGG	0.616344	2:-49958894	None:intergenic
TATCTCGTCGCAGAGTATCG+CGG	0.698927	2:+49957789	MsaT008930.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	49957547	49958958	49957547	ID=MsaG008930
Chr2	mRNA	49957547	49958958	49957547	ID=MsaT008930.1;Parent=MsaG008930
Chr2	exon	49957547	49957978	49957547	ID=MsaT008930.1.exon1;Parent=MsaT008930.1
Chr2	CDS	49957547	49957978	49957547	ID=cds.MsaT008930.1;Parent=MsaT008930.1
Chr2	exon	49958743	49958958	49958743	ID=MsaT008930.1.exon2;Parent=MsaT008930.1
Chr2	CDS	49958743	49958958	49958743	ID=cds.MsaT008930.1;Parent=MsaT008930.1

Gene Sequence

>MsaT008930.1

ATGAATGAAATTTTCCCAACTGAGGAAGATTTCATTTTCAACAACTACCAGCTTCCATGTCCAAAACGCCAAAAGCTGCTATACTATGAGGAGAAAAGAGAAGAGCCACAACAAGAGCTTTTGAACTCAACCAATTTTTTTGTGGATGAGTTTATGACTAACCCTAACCCTTTTGCTTCCTTTGAGACAGAACCAAAAATTGTTGATGTTGTTCAATGTGAGAAGAAAGTTGGTGAAAGGACTATCTCGTCGCAGAGTATCGCGGCTCGAGAAAGGAGAAGGAAGATAACTGAGAAGACACAAGAGCTAGGGAAGTTGGTTCCTGGTGGACCAAAGATGAACACAGCAGAGATGCTTCATGCTGCTGCTAATTATGTCAAGTTTCTTCAAGCTCAAGTTGGAATGCTTCAACTTATGGAAACATTTAGCAAGGAAGAAAAGGAACCTCCTCCAAGTGAAGATCTACACAAACTAGTTGTTTCTCCATTTGTTCAAGAGAAATTGTATTCAGAAGAAAAGTGCTTTGTTCCAAAAGAGTTTGTCACCAAATTGAGCAATCATAATGATGTTCAATCAAAACCTACCATCCTTAAGGGTCTGAAACAGCTTGTTGGAACTGAGATTGAGAAGAAACCAAAGCAAGAATAG

Protein sequence

>MsaT008930.1

MNEIFPTEEDFIFNNYQLPCPKRQKLLYYEEKREEPQQELLNSTNFFVDEFMTNPNPFASFETEPKIVDVVQCEKKVGERTISSQSIAARERRRKITEKTQELGKLVPGGPKMNTAEMLHAAANYVKFLQAQVGMLQLMETFSKEEKEPPPSEDLHKLVVSPFVQEKLYSEEKCFVPKEFVTKLSNHNDVQSKPTILKGLKQLVGTEIEKKPKQE*