Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008987 | XP_013464103.1 | 87.985 | 541 | 18 | 3 | 1 | 496 | 1 | 539 | 0.0 | 950 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008987 | sp|Q94JW8|SPL6_ARATH | 50.602 | 166 | 66 | 3 | 86 | 244 | 83 | 239 | 3.99e-40 | 152 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008987 | tr|A0A072V9R5|A0A072V9R5_MEDTR | 87.985 | 541 | 18 | 3 | 1 | 496 | 1 | 539 | 0.0 | 950 |
Gene ID | Type | Classification |
---|---|---|
MsaG008987 | TF | SBP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG008815 | MsaG008987 | 0.818245 | 3.780183e-52 | 7.940011e-50 |
MsaG008987 | MsaG040314 | 0.805921 | 1.789824e-49 | 2.772357e-47 |
MsaG008987 | MsaG044305 | 0.809819 | 2.677738e-50 | 4.552967e-48 |
MsaG008987 | MsaG045400 | 0.803904 | 4.702882e-49 | 6.950749e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008987 | MtrunA17_Chr2g0308321 | 87.985 | 541 | 18 | 3 | 1 | 496 | 1 | 539 | 0.0 | 950 |
MsaG008987 | MtrunA17_Chr4g0061651 | 63.242 | 438 | 122 | 10 | 71 | 496 | 60 | 470 | 6.95e-168 | 482 |
MsaG008987 | MtrunA17_Chr5g0420051 | 36.885 | 366 | 162 | 12 | 1 | 309 | 1 | 354 | 2.51e-50 | 177 |
MsaG008987 | MtrunA17_Chr3g0132091 | 46.154 | 156 | 66 | 5 | 86 | 228 | 18 | 168 | 2.97e-31 | 123 |
MsaG008987 | MtrunA17_Chr8g0386271 | 53.077 | 130 | 49 | 3 | 86 | 203 | 45 | 174 | 8.44e-30 | 120 |
MsaG008987 | MtrunA17_Chr7g0224821 | 36.090 | 266 | 120 | 8 | 130 | 378 | 72 | 304 | 2.28e-27 | 113 |
MsaG008987 | MtrunA17_Chr7g0258471 | 52.679 | 112 | 44 | 3 | 126 | 228 | 133 | 244 | 1.47e-25 | 108 |
MsaG008987 | MtrunA17_Chr7g0231911 | 53.774 | 106 | 36 | 3 | 129 | 221 | 143 | 248 | 1.66e-25 | 106 |
MsaG008987 | MtrunA17_Chr1g0162871 | 55.446 | 101 | 37 | 2 | 111 | 203 | 79 | 179 | 2.07e-25 | 110 |
MsaG008987 | MtrunA17_Chr7g0270541 | 45.968 | 124 | 58 | 3 | 85 | 201 | 97 | 218 | 1.31e-24 | 108 |
MsaG008987 | MtrunA17_Chr8g0334671 | 63.158 | 76 | 21 | 1 | 135 | 203 | 187 | 262 | 2.13e-24 | 103 |
MsaG008987 | MtrunA17_Chr2g0302791 | 58.140 | 86 | 27 | 2 | 133 | 209 | 137 | 222 | 7.34e-24 | 105 |
MsaG008987 | MtrunA17_Chr3g0122411 | 42.384 | 151 | 68 | 4 | 67 | 203 | 95 | 240 | 3.01e-23 | 102 |
MsaG008987 | MtrunA17_Chr2g0282521 | 58.750 | 80 | 26 | 1 | 135 | 207 | 64 | 143 | 4.62e-23 | 95.1 |
MsaG008987 | MtrunA17_Chr1g0194121 | 56.818 | 88 | 31 | 1 | 121 | 201 | 133 | 220 | 4.69e-23 | 103 |
MsaG008987 | MtrunA17_Chr4g0046991 | 58.442 | 77 | 25 | 1 | 135 | 204 | 73 | 149 | 6.85e-23 | 95.1 |
MsaG008987 | MtrunA17_Chr8g0360361 | 59.459 | 74 | 23 | 1 | 135 | 201 | 65 | 138 | 2.67e-21 | 91.3 |
MsaG008987 | MtrunA17_Chr8g0377421 | 49.333 | 75 | 31 | 1 | 134 | 201 | 131 | 205 | 3.71e-17 | 82.4 |
MsaG008987 | MtrunA17_Chr8g0377401 | 36.220 | 127 | 60 | 2 | 81 | 200 | 122 | 234 | 2.24e-15 | 76.3 |
MsaG008987 | MtrunA17_Chr2g0286661 | 41.935 | 93 | 47 | 1 | 119 | 204 | 87 | 179 | 5.55e-15 | 77.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG008987 | AT1G69170.1 | 50.602 | 166 | 66 | 3 | 86 | 244 | 83 | 239 | 4.06e-41 | 152 |
MsaG008987 | AT5G50570.1 | 37.647 | 255 | 116 | 11 | 86 | 311 | 42 | 282 | 1.12e-29 | 119 |
MsaG008987 | AT5G50570.2 | 37.647 | 255 | 116 | 11 | 86 | 311 | 42 | 282 | 1.12e-29 | 119 |
MsaG008987 | AT5G50670.1 | 37.647 | 255 | 116 | 11 | 86 | 311 | 42 | 282 | 1.12e-29 | 119 |
MsaG008987 | AT5G50670.2 | 37.647 | 255 | 116 | 11 | 86 | 311 | 42 | 282 | 1.12e-29 | 119 |
MsaG008987 | AT2G42200.1 | 50.407 | 123 | 46 | 4 | 121 | 228 | 58 | 180 | 6.77e-26 | 109 |
MsaG008987 | AT1G20980.1 | 58.889 | 90 | 30 | 1 | 119 | 201 | 104 | 193 | 1.15e-25 | 111 |
MsaG008987 | AT3G57920.1 | 56.190 | 105 | 38 | 2 | 107 | 203 | 30 | 134 | 2.56e-25 | 107 |
MsaG008987 | AT1G27370.6 | 46.721 | 122 | 49 | 4 | 118 | 228 | 155 | 271 | 4.00e-25 | 106 |
MsaG008987 | AT1G27370.1 | 46.721 | 122 | 49 | 4 | 118 | 228 | 155 | 271 | 6.89e-25 | 106 |
MsaG008987 | AT1G27370.5 | 46.721 | 122 | 49 | 4 | 118 | 228 | 155 | 271 | 6.89e-25 | 106 |
MsaG008987 | AT1G27370.3 | 46.721 | 122 | 49 | 4 | 118 | 228 | 155 | 271 | 6.89e-25 | 106 |
MsaG008987 | AT1G27370.2 | 46.721 | 122 | 49 | 4 | 118 | 228 | 155 | 271 | 6.89e-25 | 106 |
MsaG008987 | AT1G27370.4 | 46.721 | 122 | 49 | 4 | 118 | 228 | 155 | 271 | 6.89e-25 | 106 |
MsaG008987 | AT1G27370.7 | 46.721 | 122 | 49 | 4 | 118 | 228 | 155 | 271 | 6.89e-25 | 106 |
MsaG008987 | AT2G47070.1 | 53.271 | 107 | 34 | 3 | 105 | 201 | 79 | 179 | 7.04e-25 | 109 |
MsaG008987 | AT5G43270.3 | 57.317 | 82 | 28 | 1 | 131 | 205 | 165 | 246 | 1.72e-24 | 105 |
MsaG008987 | AT5G43270.1 | 57.317 | 82 | 28 | 1 | 131 | 205 | 165 | 246 | 1.72e-24 | 105 |
MsaG008987 | AT5G43270.2 | 57.317 | 82 | 28 | 1 | 131 | 205 | 165 | 246 | 1.72e-24 | 105 |
MsaG008987 | AT1G02065.1 | 64.865 | 74 | 19 | 1 | 135 | 201 | 188 | 261 | 4.35e-24 | 103 |
MsaG008987 | AT1G76580.2 | 56.122 | 98 | 30 | 2 | 119 | 203 | 92 | 189 | 1.45e-23 | 105 |
MsaG008987 | AT1G76580.3 | 56.122 | 98 | 30 | 2 | 119 | 203 | 92 | 189 | 1.48e-23 | 104 |
MsaG008987 | AT3G60030.1 | 59.259 | 81 | 26 | 1 | 128 | 201 | 120 | 200 | 2.73e-23 | 104 |
MsaG008987 | AT1G76580.1 | 56.122 | 98 | 30 | 2 | 119 | 203 | 92 | 189 | 2.84e-23 | 104 |
MsaG008987 | AT2G33810.1 | 58.108 | 74 | 24 | 1 | 135 | 201 | 54 | 127 | 1.41e-22 | 93.6 |
MsaG008987 | AT1G27360.2 | 50.000 | 104 | 40 | 3 | 132 | 228 | 172 | 270 | 6.75e-22 | 98.2 |
MsaG008987 | AT1G27360.1 | 50.000 | 104 | 40 | 3 | 132 | 228 | 172 | 270 | 6.75e-22 | 98.2 |
MsaG008987 | AT1G27360.3 | 50.000 | 104 | 40 | 3 | 132 | 228 | 172 | 270 | 6.75e-22 | 98.2 |
MsaG008987 | AT1G27360.4 | 50.000 | 104 | 40 | 3 | 132 | 228 | 172 | 270 | 6.75e-22 | 98.2 |
MsaG008987 | AT1G53160.2 | 46.610 | 118 | 47 | 4 | 132 | 233 | 51 | 168 | 9.93e-22 | 92.8 |
MsaG008987 | AT1G53160.1 | 46.610 | 118 | 47 | 4 | 132 | 233 | 51 | 168 | 9.93e-22 | 92.8 |
MsaG008987 | AT3G15270.1 | 46.903 | 113 | 46 | 4 | 135 | 233 | 63 | 175 | 1.14e-21 | 92.8 |
MsaG008987 | AT1G53160.3 | 53.261 | 92 | 32 | 2 | 132 | 212 | 51 | 142 | 1.50e-21 | 92.0 |
MsaG008987 | AT5G18830.3 | 46.154 | 91 | 39 | 2 | 121 | 204 | 127 | 214 | 2.37e-15 | 79.7 |
MsaG008987 | AT5G18830.2 | 46.154 | 91 | 39 | 2 | 121 | 204 | 127 | 214 | 2.52e-15 | 79.3 |
MsaG008987 | AT5G18830.1 | 48.889 | 90 | 35 | 3 | 121 | 202 | 127 | 213 | 2.62e-15 | 79.3 |
MsaG008987 | AT1G02065.2 | 63.415 | 41 | 15 | 0 | 135 | 175 | 188 | 228 | 4.04e-11 | 63.5 |
Find 115 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCCTTTCCTTCAAGAAAA+TGG | 0.189331 | 2:+51531000 | MsaT008987.1:CDS |
TCGATTGGGTTGAAGAATTC+TGG | 0.204342 | 2:-51531233 | None:intergenic |
TGAGGATGTGCATTTATAAT+TGG | 0.243639 | 2:-51530940 | None:intergenic |
CCACAAGTTGGTATTCATTC+TGG | 0.255651 | 2:+51529450 | MsaT008987.1:CDS |
ACTATTCAGGTTTCATTTGC+TGG | 0.261393 | 2:+51529359 | MsaT008987.1:intron |
ACCTATTGAGTTTGAATGCT+TGG | 0.311089 | 2:-51528289 | None:intergenic |
GGGAGGTTGCTTCAGTCATA+TGG | 0.315390 | 2:+51529480 | MsaT008987.1:CDS |
GCATCAGAGGCGAGCCTTGC+AGG | 0.317553 | 2:+51531548 | MsaT008987.1:CDS |
TTACTGTTTGATATCAATAT+AGG | 0.332199 | 2:-51531390 | None:intergenic |
TATTGTTGTACGAAGGAAAC+AGG | 0.337560 | 2:-51530972 | None:intergenic |
ATTGCTTACTGCCAAGTATA+TGG | 0.338603 | 2:+51528474 | MsaT008987.1:CDS |
GCTTTCTACGACGCTCATTA+TGG | 0.341005 | 2:-51529428 | None:intergenic |
CCAACCTACGATTGAACCTT+TGG | 0.342458 | 2:-51528031 | None:intergenic |
CCAAGTATATGGATGTAATA+AGG | 0.348075 | 2:+51528485 | MsaT008987.1:CDS |
CCTATTGAGTTTGAATGCTT+GGG | 0.355993 | 2:-51528288 | None:intergenic |
GGAGGTTGCTTCAGTCATAT+GGG | 0.364253 | 2:+51529481 | MsaT008987.1:CDS |
ATCCAAGGAGGCTCAAATTC+CGG | 0.366080 | 2:+51531078 | MsaT008987.1:CDS |
CGATTGGGTTGAAGAATTCT+GGG | 0.380885 | 2:-51531232 | None:intergenic |
AAACATGACTCATACTATAA+TGG | 0.390275 | 2:-51531302 | None:intergenic |
CCTTATTACATCCATATACT+TGG | 0.392117 | 2:-51528485 | None:intergenic |
ATCGTGGTCCCCTTTGAAAA+TGG | 0.392209 | 2:-51528387 | None:intergenic |
TTGATCTTGTGATGGAGTCT+TGG | 0.393634 | 2:+51527953 | None:intergenic |
TGAGTTTGAATGCTTGGGCT+TGG | 0.395759 | 2:-51528283 | None:intergenic |
CGCTTCCTAAGGAGGTATCT+TGG | 0.402978 | 2:-51531116 | None:intergenic |
AGCTGTCGTAAACGTCTTGC+AGG | 0.408574 | 2:+51529405 | MsaT008987.1:CDS |
CCTAAAACCGGTTCCGCCTT+CGG | 0.416837 | 2:-51530902 | None:intergenic |
ATAAAAGCCGAAGGCGGAAC+CGG | 0.423047 | 2:+51530895 | MsaT008987.1:CDS |
GATTTGAAGCTTGGTAGATT+TGG | 0.426241 | 2:+51528339 | MsaT008987.1:CDS |
GCATGGGAATTCCTGTCGAT+TGG | 0.429542 | 2:-51531248 | None:intergenic |
TCACTCATTGATTTGAAGCT+TGG | 0.440222 | 2:+51528330 | MsaT008987.1:CDS |
ATCCGGAATTTGAGCCTCCT+TGG | 0.442331 | 2:-51531080 | None:intergenic |
CAAAGGTTCAATCGTAGGTT+GGG | 0.444056 | 2:+51528032 | MsaT008987.1:CDS |
ATCAGCTGTTCAAGGATTAT+CGG | 0.450349 | 2:+51531164 | MsaT008987.1:CDS |
GGTGATCATAGAGATGGAAT+TGG | 0.457178 | 2:+51528360 | MsaT008987.1:CDS |
ATCGAAGAGGGTGAGGTCTT+CGG | 0.459977 | 2:+51528437 | MsaT008987.1:CDS |
GGTATTCATTCTGGAAGAGC+TGG | 0.460050 | 2:+51529459 | MsaT008987.1:CDS |
TTATTCCAAGATACCTCCTT+AGG | 0.463781 | 2:+51531111 | MsaT008987.1:CDS |
CATGGGAATTCCTGTCGATT+GGG | 0.467279 | 2:-51531247 | None:intergenic |
GAAACATACCCTTTATCTTG+TGG | 0.475491 | 2:-51527985 | None:intergenic |
GAAACAGAATCAGCTGTTCA+AGG | 0.477684 | 2:+51531156 | MsaT008987.1:CDS |
ATGAGTCATGTTTCTGAAAG+TGG | 0.480897 | 2:+51531312 | MsaT008987.1:CDS |
AGAAATGTGGAAATAGTAAC+TGG | 0.480981 | 2:+51530863 | MsaT008987.1:CDS |
CCCAAGCATTCAAACTCAAT+AGG | 0.481003 | 2:+51528288 | MsaT008987.1:CDS |
AATGGTCGTGCCATCTTCAC+AGG | 0.486457 | 2:-51531487 | None:intergenic |
GACCGTCTTTCCTGTGAAGA+TGG | 0.490853 | 2:+51531477 | MsaT008987.1:CDS |
CTGAAAGTGGCGTCTCGGAT+AGG | 0.491794 | 2:+51531325 | MsaT008987.1:CDS |
TCAGCTGTTCAAGGATTATC+GGG | 0.494261 | 2:+51531165 | MsaT008987.1:CDS |
ATTGAAGTCTTCGCTTCCTA+AGG | 0.501723 | 2:-51531127 | None:intergenic |
CTGATGTTAGCATGGTTCCT+TGG | 0.502694 | 2:-51530792 | None:intergenic |
ACTTCTAAAGTAATAGTGAA+TGG | 0.503268 | 2:+51528567 | MsaT008987.1:CDS |
CCTCACCGGGGAGTATCTCT+TGG | 0.503402 | 2:-51530828 | None:intergenic |
AATGGTGCTACATCTGCTAC+TGG | 0.508879 | 2:+51531018 | MsaT008987.1:CDS |
ATAATTGGAATAGAAGAAAG+AGG | 0.509513 | 2:-51530925 | None:intergenic |
ATGATTCTTCCTGCTCTCTA+CGG | 0.510890 | 2:+51531583 | MsaT008987.1:CDS |
GACTCATACTATAATGGCTA+TGG | 0.516959 | 2:-51531296 | None:intergenic |
GAATTTGAGCCTCCTTGGAT+AGG | 0.517666 | 2:-51531075 | None:intergenic |
CCAAAGGTTCAATCGTAGGT+TGG | 0.518946 | 2:+51528031 | MsaT008987.1:CDS |
TTACGTAATCCGTAGAGAGC+AGG | 0.520716 | 2:-51531592 | None:intergenic |
GGCAGTAAGCAATCTGAGAA+TGG | 0.521246 | 2:-51528464 | None:intergenic |
GAAAATGACAACAATAATCA+AGG | 0.521619 | 2:+51528096 | MsaT008987.1:CDS |
TTGCTGGCTGAATTTGATGA+TGG | 0.522089 | 2:+51529375 | MsaT008987.1:CDS |
AGAAGAAAGAGGCCTAAAAC+CGG | 0.523177 | 2:-51530914 | None:intergenic |
CTATAATGGCTATGGCTGCT+CGG | 0.525746 | 2:-51531288 | None:intergenic |
TTGGAATAATGATTGTGATC+CGG | 0.528558 | 2:-51531097 | None:intergenic |
CGACAGTTGAAGCAAGTCAA+TGG | 0.529505 | 2:-51531505 | None:intergenic |
AATAACTAAATGACCAGGCA+TGG | 0.532105 | 2:-51531265 | None:intergenic |
TCGACAGGAATTCCCATGCC+TGG | 0.536060 | 2:+51531252 | MsaT008987.1:CDS |
TTTGAGCCTCCTTGGATAGG+AGG | 0.541499 | 2:-51531072 | None:intergenic |
TCAGAAGATAAGACCTCACC+GGG | 0.542752 | 2:-51530841 | None:intergenic |
GAGGTTGCTTCAGTCATATG+GGG | 0.543950 | 2:+51529482 | MsaT008987.1:CDS |
AATTCTTCAACCCAATCGAC+AGG | 0.554625 | 2:+51531237 | MsaT008987.1:CDS |
CGACACCATCGAAGAGGGTG+AGG | 0.555818 | 2:+51528430 | MsaT008987.1:CDS |
CGTTGACAAAATCCGACCCC+TGG | 0.557627 | 2:-51531449 | None:intergenic |
AGATTTGGTGATCATAGAGA+TGG | 0.560484 | 2:+51528354 | MsaT008987.1:CDS |
GTATTCATTCTGGAAGAGCT+GGG | 0.561734 | 2:+51529460 | MsaT008987.1:CDS |
TCTGAGTTAAATCATACAGA+TGG | 0.562489 | 2:+51531354 | MsaT008987.1:CDS |
GAAGTCTTCGCTTCCTAAGG+AGG | 0.563138 | 2:-51531124 | None:intergenic |
GAAGACCTCACCCTCTTCGA+TGG | 0.563679 | 2:-51528435 | None:intergenic |
TGTTTCTGAAAGTGGCGTCT+CGG | 0.565635 | 2:+51531320 | MsaT008987.1:CDS |
AATTGTTTATTGTTGTACGA+AGG | 0.567910 | 2:-51530979 | None:intergenic |
CTCAGAAGATAAGACCTCAC+CGG | 0.577587 | 2:-51530842 | None:intergenic |
ATATGCCAAGAGATACTCCC+CGG | 0.578163 | 2:+51530823 | MsaT008987.1:CDS |
CTCGGAATAACTAAATGACC+AGG | 0.578215 | 2:-51531270 | None:intergenic |
GGAAACAGGGTTCTTGAATG+AGG | 0.578570 | 2:-51530958 | None:intergenic |
CTTACAGATAGCAGATTCCA+AGG | 0.587504 | 2:+51530775 | MsaT008987.1:intron |
TGCCATCTTCACAGGAAAGA+CGG | 0.587669 | 2:-51531479 | None:intergenic |
TCAAGGATTATCGGGAGTAT+CGG | 0.590961 | 2:+51531173 | MsaT008987.1:CDS |
TCTGTATGATTTAACTCAGA+CGG | 0.594329 | 2:-51531351 | None:intergenic |
GGTCAATATCCTCCTATCCA+AGG | 0.597117 | 2:+51531063 | MsaT008987.1:CDS |
AAAAGATGCTGATGTTAGCA+TGG | 0.597201 | 2:-51530800 | None:intergenic |
TAGTGAATGGAATTGAACAA+AGG | 0.600144 | 2:+51528580 | MsaT008987.1:CDS |
TTCAGCGTGTTGAGCATCAG+AGG | 0.601537 | 2:+51531535 | MsaT008987.1:CDS |
AGAACCAAAGGTTCAATCGT+AGG | 0.602184 | 2:+51528027 | MsaT008987.1:CDS |
CGTCGTAGAAAGCCACAAGT+TGG | 0.607871 | 2:+51529438 | MsaT008987.1:CDS |
CCAGAATGAATACCAACTTG+TGG | 0.611115 | 2:-51529450 | None:intergenic |
ATAACTAAATGACCAGGCAT+GGG | 0.613150 | 2:-51531264 | None:intergenic |
GTCTTATCTTCTGAGAAATG+TGG | 0.623862 | 2:+51530850 | MsaT008987.1:CDS |
GTTGTAAAGATTATCACAAG+AGG | 0.629804 | 2:+51528517 | MsaT008987.1:CDS |
ACACTTGGTAGTAGAACCAA+AGG | 0.641812 | 2:+51528015 | MsaT008987.1:CDS |
ATCGTCGACACCATCGAAGA+GGG | 0.642893 | 2:+51528425 | MsaT008987.1:CDS |
AGCATCTTCTGTGAAAACAA+TGG | 0.648314 | 2:+51531042 | MsaT008987.1:CDS |
GATCGTCGACACCATCGAAG+AGG | 0.649184 | 2:+51528424 | MsaT008987.1:CDS |
TATGTTTCAAATGACACACT+TGG | 0.649632 | 2:+51528000 | MsaT008987.1:CDS |
TGCAGACCTATAAAAGCCGA+AGG | 0.654610 | 2:+51530886 | MsaT008987.1:CDS |
ATTGTTGTACGAAGGAAACA+GGG | 0.661617 | 2:-51530971 | None:intergenic |
TCCAGACGACGACAAAATCG+TGG | 0.669160 | 2:-51528403 | None:intergenic |
GGATTATCGGGAGTATCGGA+CGG | 0.671634 | 2:+51531177 | MsaT008987.1:CDS |
CCAAGAGATACTCCCCGGTG+AGG | 0.681967 | 2:+51530828 | MsaT008987.1:CDS |
GGATGTAATAAGGATTTGAG+TGG | 0.689862 | 2:+51528495 | MsaT008987.1:CDS |
CAATATCCTCCTATCCAAGG+AGG | 0.704515 | 2:+51531066 | MsaT008987.1:CDS |
TTCATTCTGGAAGAGCTGGG+AGG | 0.705305 | 2:+51529463 | MsaT008987.1:CDS |
AGACCTATAAAAGCCGAAGG+CGG | 0.722914 | 2:+51530889 | MsaT008987.1:CDS |
AGGTTGCTTCAGTCATATGG+GGG | 0.727655 | 2:+51529483 | MsaT008987.1:CDS |
TTATCGGGAGTATCGGACGG+TGG | 0.747831 | 2:+51531180 | MsaT008987.1:CDS |
CAGAAGATAAGACCTCACCG+GGG | 0.863209 | 2:-51530840 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 51527964 | 51531614 | 51527964 | ID=MsaG008987 |
Chr2 | mRNA | 51527964 | 51531614 | 51527964 | ID=MsaT008987.1;Parent=MsaG008987 |
Chr2 | exon | 51527964 | 51528141 | 51527964 | ID=MsaT008987.1.exon1;Parent=MsaT008987.1 |
Chr2 | CDS | 51527964 | 51528141 | 51527964 | ID=cds.MsaT008987.1;Parent=MsaT008987.1 |
Chr2 | exon | 51528259 | 51528601 | 51528259 | ID=MsaT008987.1.exon2;Parent=MsaT008987.1 |
Chr2 | CDS | 51528259 | 51528601 | 51528259 | ID=cds.MsaT008987.1;Parent=MsaT008987.1 |
Chr2 | exon | 51529368 | 51529504 | 51529368 | ID=MsaT008987.1.exon3;Parent=MsaT008987.1 |
Chr2 | CDS | 51529368 | 51529504 | 51529368 | ID=cds.MsaT008987.1;Parent=MsaT008987.1 |
Chr2 | exon | 51530782 | 51531614 | 51530782 | ID=MsaT008987.1.exon4;Parent=MsaT008987.1 |
Chr2 | CDS | 51530782 | 51531614 | 51530782 | ID=cds.MsaT008987.1;Parent=MsaT008987.1 |
Gene Sequence |
Protein sequence |