AlfalfaGEDB | MsaG009059

M. sativa ssp. caerulea / MsaG009059

KEGG: -
GO: GO:0000394 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363
PFAM: PF02536.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009059	XP_039686534.1	94.052	269	16	0	1	269	164	432	0.0	516

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009059	sp\|Q9C6A1\|MTEFE_ARATH	57.621	269	114	0	1	269	177	445	4.50e-112	333

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009059	tr\|A0A396JD16\|A0A396JD16_MEDTR	94.052	269	16	0	1	269	164	432	0.0	516

TFs/TRs:

Gene ID	Type	Classification
MsaG009059	TR	mTERF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000093	MsaG009059	0.810718	1.716954e-50	2.983810e-48
MsaG000117	MsaG009059	0.800158	2.745795e-48	3.725694e-46
MsaG000327	MsaG009059	0.844030	1.818029e-58	8.068671e-56
MsaG000514	MsaG009059	0.863150	6.066914e-64	5.326334e-61
MsaG000624	MsaG009059	0.801916	1.205215e-48	1.701722e-46
MsaG001001	MsaG009059	0.835203	3.506143e-56	1.181567e-53
MsaG001188	MsaG009059	0.827137	3.293990e-54	8.792344e-52
MsaG002021	MsaG009059	0.848631	1.027222e-59	5.313394e-57
MsaG002052	MsaG009059	0.820590	1.110017e-52	2.479693e-50
MsaG002420	MsaG009059	0.820457	1.190371e-52	2.650002e-50
MsaG003423	MsaG009059	0.802313	9.994045e-49	1.424008e-46
MsaG003427	MsaG009059	0.850032	4.199787e-60	2.278544e-57
MsaG003612	MsaG009059	0.823725	2.097767e-53	5.096948e-51
MsaG004279	MsaG009059	0.824152	1.667891e-53	4.099482e-51
MsaG004379	MsaG009059	0.805545	2.143965e-49	3.291734e-47
MsaG004479	MsaG009059	0.814935	2.068206e-51	3.991434e-49
MsaG004754	MsaG009059	0.807290	9.226230e-50	1.476104e-47
MsaG004793	MsaG009059	0.802509	9.111860e-49	1.304130e-46
MsaG004830	MsaG009059	0.801514	1.456237e-48	2.037424e-46
MsaG004929	MsaG009059	0.846880	3.099405e-59	1.511584e-56
MsaG005156	MsaG009059	0.802087	1.111854e-48	1.576011e-46
MsaG005346	MsaG009059	0.808044	6.392922e-50	1.041475e-47
MsaG005576	MsaG009059	0.835197	3.519119e-56	1.185691e-53
MsaG005936	MsaG009059	0.836639	1.522046e-56	5.355282e-54
MsaG006133	MsaG009059	0.833535	9.152830e-56	2.935115e-53
MsaG006221	MsaG009059	0.828283	1.752821e-54	4.831483e-52
MsaG006334	MsaG009059	0.837799	7.710671e-57	2.810483e-54
MsaG006352	MsaG009059	0.811208	1.345932e-50	2.367274e-48
MsaG006427	MsaG009059	0.804884	2.945180e-49	4.453089e-47
MsaG006625	MsaG009059	0.810043	2.396860e-50	4.097433e-48
MsaG006729	MsaG009059	0.803807	4.924880e-49	7.262609e-47
MsaG007000	MsaG009059	0.801550	1.432017e-48	2.005138e-46
MsaG007006	MsaG009059	0.833287	1.054542e-55	3.357091e-53
MsaG008201	MsaG009059	0.892595	3.054531e-74	1.032685e-70
MsaG008522	MsaG009059	0.838853	4.137391e-57	1.558279e-54
MsaG008615	MsaG009059	0.871884	9.950753e-67	1.249516e-63
MsaG008617	MsaG009059	0.800703	2.129801e-48	2.925747e-46
MsaG009007	MsaG009059	0.832591	1.567900e-55	4.890438e-53
MsaG009009	MsaG009059	0.813205	4.959461e-51	9.164606e-49
MsaG009059	MsaG009345	0.807583	8.003285e-50	1.289395e-47
MsaG009059	MsaG009703	0.824876	1.128458e-53	2.829003e-51
MsaG009059	MsaG009781	0.813694	3.876078e-51	7.250869e-49
MsaG009059	MsaG010213	0.806275	1.508686e-49	2.356676e-47
MsaG009059	MsaG010483	0.812569	6.825697e-51	1.241481e-48
MsaG009059	MsaG010619	0.821695	6.193013e-53	1.424606e-50
MsaG009059	MsaG011237	0.809322	3.420103e-50	5.745338e-48
MsaG009059	MsaG011406	0.800312	2.556372e-48	3.480706e-46
MsaG009059	MsaG011383	0.847207	2.524146e-59	1.244684e-56
MsaG009059	MsaG011468	0.814400	2.713696e-51	5.167155e-49
MsaG009059	MsaG011971	0.829322	9.854860e-55	2.797048e-52
MsaG009059	MsaG012160	0.838061	6.608329e-57	2.428258e-54
MsaG009059	MsaG012206	0.826758	4.055039e-54	1.070982e-51
MsaG009059	MsaG012633	0.822850	3.350950e-53	7.951054e-51
MsaG009059	MsaG013374	0.815243	1.768348e-51	3.439474e-49
MsaG009059	MsaG014671	0.815795	1.334475e-51	2.632054e-49
MsaG009059	MsaG014725	0.812402	7.422458e-51	1.344416e-48
MsaG009059	MsaG016058	0.832229	1.925093e-55	5.941794e-53
MsaG009059	MsaG016293	0.848800	9.221046e-60	4.797063e-57
MsaG009059	MsaG016368	0.813804	3.667022e-51	6.879005e-49
MsaG009059	MsaG016571	0.821191	8.088091e-53	1.835847e-50
MsaG009059	MsaG016826	0.845616	6.825562e-59	3.191804e-56
MsaG009059	MsaG017109	0.817674	5.080575e-52	1.051511e-49
MsaG009059	MsaG017354	0.827738	2.368184e-54	6.428649e-52
MsaG009059	MsaG017543	0.829041	1.152102e-54	3.243979e-52
MsaG009059	MsaG017589	0.829323	9.847858e-55	2.795171e-52
MsaG009059	MsaG017722	0.819702	1.768850e-52	3.859623e-50
MsaG009059	MsaG017737	0.806016	1.709747e-49	2.654183e-47
MsaG009059	MsaG018367	0.860395	4.186980e-63	3.305445e-60
MsaG009059	MsaG018417	0.810147	2.277476e-50	3.903146e-48
MsaG009059	MsaG018874	0.823350	2.565654e-53	6.170619e-51
MsaG009059	MsaG018891	0.835985	2.228138e-56	7.686694e-54
MsaG009059	MsaG018902	0.807377	8.844837e-50	1.418031e-47
MsaG009059	MsaG019303	0.800386	2.469504e-48	3.368162e-46
MsaG009059	MsaG019615	0.812330	7.693027e-51	1.390918e-48
MsaG009059	MsaG019654	0.810052	2.386303e-50	4.080253e-48
MsaG009059	MsaG020104	0.811276	1.301383e-50	2.292738e-48
MsaG009059	MsaG020296	0.838878	4.075192e-57	1.536054e-54
MsaG009059	MsaG020402	0.818531	3.258316e-52	6.894772e-50
MsaG009059	MsaG020485	0.819329	2.149709e-52	4.645297e-50
MsaG009059	MsaG020616	0.810913	1.558356e-50	2.721126e-48
MsaG009059	MsaG020731	0.803235	6.463875e-49	9.406916e-47
MsaG009059	MsaG020787	0.804165	4.153237e-49	6.175793e-47
MsaG009059	MsaG020814	0.822734	3.565382e-53	8.433390e-51
MsaG009059	MsaG020815	0.818447	3.404192e-52	7.187710e-50
MsaG009059	MsaG021429	0.801889	1.220532e-48	1.722334e-46
MsaG009059	MsaG021520	0.809489	3.149921e-50	5.313458e-48
MsaG009059	MsaG021859	0.839894	2.226990e-57	8.665045e-55
MsaG009059	MsaG022116	0.811871	9.674366e-51	1.729498e-48
MsaG009059	MsaG022079	0.830774	4.375735e-55	1.294721e-52
MsaG009059	MsaG023503	0.831551	2.825675e-55	8.551145e-53
MsaG009059	MsaG023609	0.864200	2.873662e-64	2.629830e-61
MsaG009059	MsaG023647	0.808715	4.606094e-50	7.626181e-48
MsaG009059	MsaG023810	0.809474	3.173767e-50	5.351639e-48
MsaG009059	MsaG023941	0.833329	1.029457e-55	3.281259e-53
MsaG009059	MsaG024045	0.803327	6.187842e-49	9.024220e-47
MsaG009059	MsaG025428	0.825712	7.174549e-54	1.840597e-51
MsaG009059	MsaG025722	0.804686	3.237956e-49	4.873140e-47
MsaG009059	MsaG026841	0.813111	5.200917e-51	9.587911e-49
MsaG009059	MsaG027303	0.802386	9.656423e-49	1.378190e-46
MsaG009059	MsaG027390	0.823328	2.595661e-53	6.239147e-51
MsaG009059	MsaG027416	0.843792	2.105232e-58	9.271923e-56
MsaG009059	MsaG027749	0.809517	3.106664e-50	5.243989e-48
MsaG009059	MsaG027966	0.813002	5.492624e-51	1.009847e-48
MsaG009059	MsaG028038	0.808012	6.493289e-50	1.057019e-47
MsaG009059	MsaG028105	0.818352	3.575434e-52	7.530722e-50
MsaG009059	MsaG028189	0.818509	3.295289e-52	6.969108e-50
MsaG009059	MsaG028516	0.816426	9.660566e-52	1.936228e-49
MsaG009059	MsaG028530	0.863886	3.596189e-64	3.249849e-61
MsaG009059	MsaG028951	0.815037	1.963481e-51	3.799066e-49
MsaG009059	MsaG028908	0.817547	5.423636e-52	1.118904e-49
MsaG009059	MsaG028911	0.800741	2.091975e-48	2.876242e-46
MsaG009059	MsaG029345	0.822886	3.287572e-53	7.808124e-51
MsaG009059	MsaG029481	0.839757	2.416271e-57	9.360639e-55
MsaG009059	MsaG029600	0.813974	3.365454e-51	6.340091e-49
MsaG009059	MsaG029661	0.819018	2.529282e-52	5.420694e-50
MsaG009059	MsaG029838	0.806847	1.143934e-49	1.811077e-47
MsaG009059	MsaG029987	0.824232	1.597175e-53	3.934299e-51
MsaG009059	MsaG030359	0.863766	3.917407e-64	3.523642e-61
MsaG009059	MsaG030955	0.848172	1.373817e-59	6.997327e-57
MsaG009059	MsaG030986	0.806191	1.571350e-49	2.449599e-47
MsaG009059	MsaG032422	0.815930	1.245229e-51	2.464525e-49
MsaG009059	MsaG033298	0.833572	8.960911e-56	2.876672e-53
MsaG009059	MsaG033396	0.819191	2.310220e-52	4.973992e-50
MsaG009059	MsaG033540	0.819596	1.869749e-52	4.068323e-50
MsaG009059	MsaG033519	0.901341	6.837446e-78	3.784956e-74
MsaG009059	MsaG033744	0.813996	3.328719e-51	6.274253e-49
MsaG009059	MsaG033989	0.831539	2.844073e-55	8.603913e-53
MsaG009059	MsaG034204	0.801023	1.833044e-48	2.536250e-46
MsaG009059	MsaG034132	0.847545	2.041480e-59	1.018150e-56
MsaG009059	MsaG034875	0.823669	2.162006e-53	5.245152e-51
MsaG009059	MsaG035190	0.806947	1.090015e-49	1.729785e-47
MsaG009059	MsaG035203	0.809994	2.456526e-50	4.194417e-48
MsaG009059	MsaG035404	0.830722	4.506340e-55	1.331306e-52
MsaG009059	MsaG035660	0.845761	6.234688e-59	2.929642e-56
MsaG009059	MsaG035702	0.846634	3.617110e-59	1.749517e-56
MsaG009059	MsaG036242	0.820210	1.355921e-52	2.998879e-50
MsaG009059	MsaG036251	0.841096	1.083215e-57	4.377053e-55
MsaG009059	MsaG039196	0.836183	1.985694e-56	6.891532e-54
MsaG009059	MsaG039679	0.808716	4.603213e-50	7.621652e-48
MsaG009059	MsaG039924	0.800773	2.060961e-48	2.835662e-46
MsaG009059	MsaG042222	0.804092	4.299968e-49	6.383407e-47
MsaG009059	MsaG042557	0.836271	1.886337e-56	6.564355e-54
MsaG009059	MsaG043190	0.803914	4.679603e-49	6.918067e-47
MsaG009059	MsaG043225	0.810846	1.611585e-50	2.809480e-48
MsaG009059	MsaG043350	0.809838	2.652810e-50	4.512623e-48
MsaG009059	MsaG044983	0.848887	8.725436e-60	4.553049e-57
MsaG009059	MsaG045004	0.808868	4.272713e-50	7.100302e-48
MsaG009059	MsaG045358	0.813642	3.979847e-51	7.435238e-49
MsaG009059	MsaG045609	0.822863	3.328178e-53	7.899809e-51
MsaG009059	MsaG045654	0.843106	3.203533e-58	1.380249e-55
MsaG009059	MsaG045769	0.808321	5.583707e-50	9.156999e-48
MsaG009059	MsaG045974	0.847629	1.935833e-59	9.681230e-57
MsaG009059	MsaG045977	0.811182	1.363997e-50	2.397477e-48
MsaG009059	MsaG046247	0.824004	1.806284e-53	4.421967e-51
MsaG009059	MsaG046393	0.809548	3.060142e-50	5.169177e-48
MsaG009059	MsaG046506	0.800662	2.170894e-48	2.979441e-46
MsaG009059	MsaG046546	0.829667	8.132458e-55	2.331254e-52
MsaG009059	MsaG046554	0.862517	9.494906e-64	8.131038e-61
MsaG009059	MsaG046733	0.805009	2.773731e-49	4.206046e-47
MsaG009059	MsaG046895	0.815816	1.319748e-51	2.604463e-49
MsaG009059	MsaG046946	0.832428	1.719271e-55	5.337506e-53
MsaG009059	MsaG046977	0.800694	2.138724e-48	2.937417e-46
MsaG009059	MsaG047067	0.852220	1.020157e-60	5.971970e-58
MsaG009059	MsaG047135	0.842908	3.614881e-58	1.547602e-55
MsaG009059	MsaG001077	0.803850	4.824108e-49	7.121101e-47
MsaG009059	MsaG002401	0.814179	3.034885e-51	5.746703e-49
MsaG009059	MsaG002575	0.811787	1.008997e-50	1.800031e-48
MsaG009059	MsaG001460	0.847591	1.983167e-59	9.905586e-57
MsaG009059	MsaG003742	0.800906	1.936744e-48	2.672622e-46
MsaG009059	MsaG009602	0.833908	7.392383e-56	2.396654e-53
MsaG009059	MsaG008311	0.817172	6.583149e-52	1.345090e-49
MsaG009059	MsaG006602	0.801021	1.835239e-48	2.539155e-46
MsaG009059	MsaG016780	0.818883	2.712340e-52	5.792457e-50
MsaG009059	MsaG014165	0.806472	1.371912e-49	2.153033e-47
MsaG009059	MsaG012156	0.833687	8.390269e-56	2.702751e-53
MsaG009059	MsaG023443	0.828568	1.497297e-54	4.160380e-52
MsaG009059	MsaG029824	0.820903	9.412975e-53	2.120328e-50
MsaG009059	MsaG027101	0.801099	1.769447e-48	2.452403e-46
MsaG009059	MsaG027598	0.801148	1.728610e-48	2.398534e-46
MsaG009059	MsaG025855	0.812002	9.065106e-51	1.625761e-48
MsaG009059	MsaG028732	0.837236	1.073548e-56	3.846078e-54
MsaG009059	MsaG034520	0.815861	1.289931e-51	2.548466e-49
MsaG009059	MsaG032695	0.827520	2.668786e-54	7.200518e-52
MsaG009059	MsaG031291	0.857876	2.362144e-62	1.695460e-59
MsaG009059	MsaG030000	0.821162	8.209050e-53	1.861936e-50
MsaG009059	MsaG036784	0.826220	5.439783e-54	1.415357e-51
MsaG009059	MsaG035112	0.801911	1.208118e-48	1.705633e-46
MsaG009059	MsaG038711	0.822655	3.719189e-53	8.778109e-51
MsaG009059	MsaG036671	0.811879	9.637433e-51	1.723222e-48
MsaG009059	MsaG035918	0.833058	1.201508e-55	3.799321e-53
MsaG009059	MsaG039091	0.802936	7.447716e-49	1.076404e-46
MsaG009059	MsaG043823	0.802444	9.397988e-49	1.343066e-46
MsaG009059	MsaG042291	0.826343	5.087763e-54	1.328329e-51
MsaG009059	MsaG047040	0.812725	6.312686e-51	1.152601e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009059	MtrunA17_Chr2g0308761	94.052	269	16	0	1	269	164	432	0.0	516
MsaG009059	MtrunA17_Chr2g0308431	89.011	91	8	1	155	245	1	89	9.91e-52	165
MsaG009059	MtrunA17_Chr4g0020831	95.238	84	4	0	155	238	1	84	2.75e-51	164
MsaG009059	MtrunA17_Chr1g0212691	27.638	199	124	4	4	191	245	434	9.53e-11	61.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009059	AT1G74120.1	57.621	269	114	0	1	269	177	445	4.58e-113	333
MsaG009059	AT5G54180.1	29.730	185	125	4	10	191	290	472	2.16e-14	73.2
MsaG009059	AT1G62010.1	32.787	122	79	3	101	220	268	388	2.91e-13	69.7
MsaG009059	AT1G62120.1	29.167	120	84	1	102	220	291	410	5.24e-11	62.8
MsaG009059	AT1G62085.1	25.414	181	127	4	46	220	266	444	7.16e-11	62.4
MsaG009059	AT1G62085.2	25.414	181	127	4	46	220	266	444	7.16e-11	62.4
MsaG009059	AT5G23930.1	29.091	110	74	1	120	225	336	445	7.39e-11	62.4

Find 64 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGTTAGGGATCCAAGGATTT+TGG	0.152438	2:-52422010	MsaT009059.1:CDS
ATTCATGAGCTGAGGGGTTT+GGG	0.198657	2:-52422063	MsaT009059.1:CDS
TAGATTGTTTCCTAGGGTTT+TGG	0.199228	2:-52422118	MsaT009059.1:CDS
CATGTTCATCACATCTTTAC+TGG	0.212061	2:+52421438	None:intergenic
GATTCATGAGCTGAGGGGTT+TGG	0.264040	2:-52422064	MsaT009059.1:CDS
AAGGTTGATTGGTTATGATT+TGG	0.292614	2:-52421797	MsaT009059.1:CDS
CAACACTATATTTCATCCTT+TGG	0.303808	2:+52421743	None:intergenic
AGGTCAGGGCGGAGGTTGTT+AGG	0.309694	2:-52422026	MsaT009059.1:CDS
AAATTCACACCCAAGTATTC+AGG	0.317076	2:+52421703	None:intergenic
TTGAAGGGAAAAGGTGCAAT+TGG	0.365701	2:-52421640	MsaT009059.1:CDS
GATGAACATGAAGGCTTTCA+TGG	0.369314	2:-52421425	MsaT009059.1:CDS
GAGTTGTTAGATTGTTTCCT+AGG	0.373935	2:-52422125	MsaT009059.1:CDS
TGAAGGGAAAAGGTGCAATT+GGG	0.398114	2:-52421639	MsaT009059.1:CDS
GGTGCAATTGGGTTTGAAGT+TGG	0.399622	2:-52421628	MsaT009059.1:CDS
ACTCTATCAATTTCATCCTT+AGG	0.408293	2:+52422144	None:intergenic
TGGGATTTGGTATTGAGGAT+AGG	0.409253	2:-52422098	MsaT009059.1:CDS
GAAAGCATCCCGTTGGACTT+TGG	0.413704	2:-52421492	MsaT009059.1:CDS
TCACATCTTTACTGGTTTGA+GGG	0.416518	2:+52421446	None:intergenic
TGGAAGGAACCAAGGTTGAT+TGG	0.421046	2:-52421808	MsaT009059.1:CDS
ATCACATCTTTACTGGTTTG+AGG	0.423102	2:+52421445	None:intergenic
AATTCGTAGGGATGCTTTGA+AGG	0.423395	2:-52421836	MsaT009059.1:CDS
TGTTGCAGAGTTTGAAATGC+AGG	0.431814	2:-52421951	MsaT009059.1:CDS
GCATGAAGTTCCTGAATACT+TGG	0.443861	2:-52421713	MsaT009059.1:CDS
GTTGATTGGTTATGATTTGG+AGG	0.446145	2:-52421794	MsaT009059.1:CDS
CCCCTCAGCTCATGAATCAA+TGG	0.448660	2:+52422069	None:intergenic
CAGCCGAGAGGTCAGGGCGG+AGG	0.450679	2:-52422034	MsaT009059.1:CDS
ATCTCCATTCCCAAAATCCT+TGG	0.454905	2:+52422000	None:intergenic
TACTCAATCACATTGTATCT+AGG	0.456654	2:+52421664	None:intergenic
TTATAAAATCTAAGCCTAGT+TGG	0.470603	2:+52421586	None:intergenic
CTCCGCCCTGACCTCTCGGC+TGG	0.473380	2:+52422035	None:intergenic
GGTCAGGGCGGAGGTTGTTA+GGG	0.481020	2:-52422025	MsaT009059.1:CDS
CAATGTGATTGAGTATTTGA+AGG	0.483329	2:-52421656	MsaT009059.1:CDS
AACATCTTCCAAAGTCCAAC+GGG	0.486105	2:+52421484	None:intergenic
ATTGAGTATTTGAAGGGAAA+AGG	0.490911	2:-52421649	MsaT009059.1:CDS
TGTGGAATTTGGGATTCCTA+AGG	0.495755	2:-52422160	MsaT009059.1:CDS
TTTGAGGGAACTTCGGTGGT+TGG	0.508881	2:+52421461	None:intergenic
TCATGGACTCGTTGGTGTAG+TGG	0.510176	2:-52421408	None:intergenic
AATGTGATTGAGTATTTGAA+GGG	0.522202	2:-52421655	MsaT009059.1:CDS
GTGGATTGTTTGTGCGGTCA+CGG	0.523503	2:-52421862	MsaT009059.1:CDS
TTCATGAGCTGAGGGGTTTG+GGG	0.523718	2:-52422062	MsaT009059.1:CDS
GCCATTGATTCATGAGCTGA+GGG	0.528936	2:-52422070	MsaT009059.1:CDS
TTACTGGTTTGAGGGAACTT+CGG	0.536810	2:+52421454	None:intergenic
AGTTGTTAGATTGTTTCCTA+GGG	0.538107	2:-52422124	MsaT009059.1:CDS
CGGAGGTTGTTAGGGATCCA+AGG	0.538817	2:-52422017	MsaT009059.1:CDS
CAACCTCCGCCCTGACCTCT+CGG	0.563699	2:+52422031	None:intergenic
ATACCAAATCCCAAAACCCT+AGG	0.565652	2:+52422108	None:intergenic
GCGGTCACGGTATAATTCGT+AGG	0.570160	2:-52421849	MsaT009059.1:CDS
GAAGGCTTTCATGGACTCGT+TGG	0.570328	2:-52421416	MsaT009059.1:CDS
CTGGTTTGAGGGAACTTCGG+TGG	0.572836	2:+52421457	None:intergenic
AAATCATAACCAATCAACCT+TGG	0.578600	2:+52421799	None:intergenic
TGCTTTGAAGGTGTTGTGGA+AGG	0.580553	2:-52421824	MsaT009059.1:CDS
CGGTCACGGTATAATTCGTA+GGG	0.581113	2:-52421848	MsaT009059.1:CDS
CATGAAGTTCCTGAATACTT+GGG	0.593187	2:-52421712	MsaT009059.1:CDS
AGCCATTGATTCATGAGCTG+AGG	0.597553	2:-52422071	MsaT009059.1:CDS
AAGACATTATCAAACCAACT+AGG	0.602970	2:-52421600	MsaT009059.1:CDS
GTTAAAAGAAAGCATCCCGT+TGG	0.604141	2:-52421499	MsaT009059.1:CDS
TAAAGATGTGATGAACATGA+AGG	0.609470	2:-52421434	MsaT009059.1:CDS
GGGATGCTTTGAAGGTGTTG+TGG	0.613256	2:-52421828	MsaT009059.1:CDS
GTTGCAGAGTTTGAAATGCA+GGG	0.619561	2:-52421950	MsaT009059.1:CDS
GAACATCTTCCAAAGTCCAA+CGG	0.624427	2:+52421483	None:intergenic
CTGAGAGTGGATTGTTTGTG+CGG	0.636549	2:-52421868	MsaT009059.1:CDS
CCATTGATTCATGAGCTGAG+GGG	0.690477	2:-52422069	MsaT009059.1:CDS
TTCCAGCCGAGAGGTCAGGG+CGG	0.702811	2:-52422037	MsaT009059.1:CDS
AGGTGTTGTGGAAGGAACCA+AGG	0.704640	2:-52421816	MsaT009059.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	52421411	52422220	52421411	ID=MsaG009059
Chr2	mRNA	52421411	52422220	52421411	ID=MsaT009059.1;Parent=MsaG009059
Chr2	exon	52421411	52422220	52421411	ID=MsaT009059.1.exon1;Parent=MsaT009059.1
Chr2	CDS	52421411	52422220	52421411	ID=cds.MsaT009059.1;Parent=MsaT009059.1

Gene Sequence

>MsaT009059.1

ATGGGGGAAACTCAAATTGTTAGTGTCATTGATTTTCTTGTGGAATTTGGGATTCCTAAGGATGAAATTGATAGAGTTGTTAGATTGTTTCCTAGGGTTTTGGGATTTGGTATTGAGGATAGGCTGAAGCCATTGATTCATGAGCTGAGGGGTTTGGGGTTTTCCAGCCGAGAGGTCAGGGCGGAGGTTGTTAGGGATCCAAGGATTTTGGGAATGGAGATTGGGGAATTTTCACGGTGTTTGAAGTTGTTGCAGAGTTTGAAATGCAGGGATGCAATTAAAGAGAAGATTTTTGGGGAGGGTTTGGTTAGGGCTTGTTTTGAAGTGAAGCTGAGAGTGGATTGTTTGTGCGGTCACGGTATAATTCGTAGGGATGCTTTGAAGGTGTTGTGGAAGGAACCAAGGTTGATTGGTTATGATTTGGAGGATATTGAGAAGAAGATTGAGTTTTTAATCCAAAGGATGAAATATAGTGTTGATTGTTTGCATGAAGTTCCTGAATACTTGGGTGTGAATTTTGAAAAACAGATTGTTCCTAGATACAATGTGATTGAGTATTTGAAGGGAAAAGGTGCAATTGGGTTTGAAGTTGGATTGAAAGACATTATCAAACCAACTAGGCTTAGATTTTATAATCTTTATGTCAAGCCTTACCCTGAATGTGAAAAAATATATGGCAGATTTTCAACAAAGGTTGAAGTTAAAAGAAAGCATCCCGTTGGACTTTGGAAGATGTTCCAACCACCGAAGTTCCCTCAAACCAGTAAAGATGTGATGAACATGAAGGCTTTCATGGACTCGTTGGTGTAG

Protein sequence

>MsaT009059.1

MGETQIVSVIDFLVEFGIPKDEIDRVVRLFPRVLGFGIEDRLKPLIHELRGLGFSSREVRAEVVRDPRILGMEIGEFSRCLKLLQSLKCRDAIKEKIFGEGLVRACFEVKLRVDCLCGHGIIRRDALKVLWKEPRLIGYDLEDIEKKIEFLIQRMKYSVDCLHEVPEYLGVNFEKQIVPRYNVIEYLKGKGAIGFEVGLKDIIKPTRLRFYNLYVKPYPECEKIYGRFSTKVEVKRKHPVGLWKMFQPPKFPQTSKDVMNMKAFMDSLV*