AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG009105

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG009105 MtrunA17_Chr2g0309331 98.266 346 2 4 1 344 1 344 0.0 704
MsaG009105 MtrunA17_Chr8g0346001 75.148 169 31 2 5 163 10 177 8.24e-90 276
MsaG009105 MtrunA17_Chr4g0017921 71.667 180 45 4 10 187 8 183 8.33e-89 270
MsaG009105 MtrunA17_Chr5g0405211 56.327 245 95 5 5 239 3 245 1.78e-88 270
MsaG009105 MtrunA17_Chr4g0056541 48.867 309 114 10 10 292 7 297 2.07e-82 254
MsaG009105 MtrunA17_Chr8g0372121 47.751 289 120 6 7 293 3 262 8.28e-82 251
MsaG009105 MtrunA17_Chr4g0018391 74.194 155 38 2 10 164 7 159 1.68e-81 251
MsaG009105 MtrunA17_Chr5g0398971 69.935 153 46 0 10 162 7 159 9.03e-80 247
MsaG009105 MtrunA17_Chr1g0200561 42.450 351 160 8 7 334 16 347 4.28e-76 238
MsaG009105 MtrunA17_Chr2g0309891 54.487 156 67 3 8 161 4 157 7.29e-59 193
MsaG009105 MtrunA17_Chr6g0481091 57.051 156 62 4 8 161 4 156 3.61e-58 188
MsaG009105 MtrunA17_Chr2g0318101 41.892 222 112 4 4 211 9 227 1.10e-57 190
MsaG009105 MtrunA17_Chr3g0091921 56.329 158 62 3 7 161 13 166 3.87e-57 187
MsaG009105 MtrunA17_Chr4g0042561 46.970 198 95 4 2 194 1 193 7.28e-57 186
MsaG009105 MtrunA17_Chr3g0139331 50.602 166 77 3 4 168 5 166 7.86e-57 188
MsaG009105 MtrunA17_Chr2g0316971 55.346 159 64 3 10 164 23 178 1.06e-56 189
MsaG009105 MtrunA17_Chr6g0484441 53.049 164 72 3 7 170 2 160 1.60e-56 186
MsaG009105 MtrunA17_Chr5g0417791 49.206 189 85 5 8 191 1 183 2.27e-56 184
MsaG009105 MtrunA17_Chr1g0147421 53.659 164 70 4 7 168 24 183 3.34e-56 187
MsaG009105 MtrunA17_Chr3g0109821 53.846 156 68 3 8 161 4 157 1.03e-55 192
MsaG009105 MtrunA17_Chr4g0060931 52.761 163 70 3 7 166 14 172 1.59e-55 185
MsaG009105 MtrunA17_Chr6g0461661 53.125 160 68 3 8 163 16 172 2.17e-54 182
MsaG009105 MtrunA17_Chr5g0433781 52.903 155 70 3 8 161 4 156 2.25e-54 188
MsaG009105 MtrunA17_Chr7g0253011 53.750 160 65 3 8 161 15 171 3.09e-54 182
MsaG009105 MtrunA17_Chr3g0124761 51.220 164 71 3 5 164 2 160 4.12e-54 179
MsaG009105 MtrunA17_Chr7g0252971 47.368 171 74 3 4 161 2 169 4.46e-54 181
MsaG009105 MtrunA17_Chr6g0453451 50.595 168 76 3 2 166 12 175 9.62e-54 179
MsaG009105 MtrunA17_Chr2g0318081 50.595 168 75 4 6 172 12 172 2.69e-53 179
MsaG009105 MtrunA17_Chr7g0214071 46.073 191 89 5 1 190 6 183 6.75e-53 175
MsaG009105 MtrunA17_Chr3g0130731 51.553 161 69 3 6 162 3 158 1.13e-52 176
MsaG009105 MtrunA17_Chr8g0359921 50.296 169 74 4 7 172 11 172 7.67e-52 174
MsaG009105 MtrunA17_Chr5g0400461 37.456 283 137 9 6 261 2 271 1.29e-51 174
MsaG009105 MtrunA17_Chr2g0312321 50.955 157 69 4 7 161 8 158 3.80e-51 172
MsaG009105 MtrunA17_Chr8g0384721 48.837 172 76 4 2 168 1 165 4.55e-51 171
MsaG009105 MtrunA17_Chr4g0047841 43.889 180 73 3 10 164 15 191 1.50e-50 171
MsaG009105 MtrunA17_Chr7g0263931 47.126 174 83 3 7 174 8 178 1.72e-50 171
MsaG009105 MtrunA17_Chr6g0453131 45.029 171 81 3 12 172 17 184 1.79e-50 172
MsaG009105 MtrunA17_Chr7g0217721 42.601 223 105 5 13 216 22 240 3.15e-50 171
MsaG009105 MtrunA17_Chr1g0183741 50.955 157 70 4 9 164 9 159 9.06e-50 167
MsaG009105 MtrunA17_Chr2g0326361 45.550 191 93 4 9 191 13 200 2.16e-49 168
MsaG009105 MtrunA17_Chr3g0144271 46.701 197 93 6 3 193 16 206 4.30e-49 170
MsaG009105 MtrunA17_Chr4g0054791 48.824 170 76 5 2 166 1 164 1.08e-48 166
MsaG009105 MtrunA17_Chr7g0217711 60.156 128 47 2 13 140 22 145 2.16e-48 160
MsaG009105 MtrunA17_Chr7g0261411 51.316 152 67 4 9 159 9 154 2.74e-48 164
MsaG009105 MtrunA17_Chr8g0361731 46.012 163 74 3 12 163 16 175 4.10e-48 166
MsaG009105 MtrunA17_Chr3g0130101 50.980 153 70 4 12 162 9 158 4.73e-48 165
MsaG009105 MtrunA17_Chr8g0364791 41.743 218 117 6 12 223 8 221 8.42e-48 167
MsaG009105 MtrunA17_Chr1g0197351 48.876 178 78 4 9 175 41 216 1.27e-47 167
MsaG009105 MtrunA17_Chr5g0417001 42.328 189 94 4 9 187 13 196 1.60e-47 165
MsaG009105 MtrunA17_Chr5g0428991 51.613 155 72 3 10 163 25 177 1.12e-46 167
MsaG009105 MtrunA17_Chr1g0201021 47.682 151 76 3 12 161 21 169 1.09e-45 164
MsaG009105 MtrunA17_Chr8g0384201 40.541 222 114 6 12 223 8 221 1.31e-45 162
MsaG009105 MtrunA17_Chr3g0128111 47.368 152 77 3 13 163 45 194 1.17e-44 153
MsaG009105 MtrunA17_Chr3g0128151 48.718 156 77 3 9 163 21 174 1.60e-44 160
MsaG009105 MtrunA17_Chr4g0076731 47.712 153 76 2 9 161 53 201 3.04e-44 157
MsaG009105 MtrunA17_Chr3g0092671 46.104 154 80 3 12 164 7 158 4.64e-44 159
MsaG009105 MtrunA17_Chr1g0197361 44.706 170 86 4 12 175 10 177 2.87e-43 157
MsaG009105 MtrunA17_Chr2g0311651 43.605 172 79 5 6 161 17 186 2.09e-42 149
MsaG009105 MtrunA17_Chr2g0311661 41.989 181 87 5 10 174 20 198 4.20e-42 148
MsaG009105 MtrunA17_Chr4g0038751 46.429 168 81 5 12 177 17 177 6.20e-42 147
MsaG009105 MtrunA17_Chr5g0442771 40.782 179 91 4 9 175 17 192 1.61e-41 147
MsaG009105 MtrunA17_Chr8g0385991 40.212 189 101 4 6 187 10 193 9.56e-41 142
MsaG009105 MtrunA17_Chr3g0131911 43.860 171 81 5 5 165 9 174 3.69e-38 136
MsaG009105 MtrunA17_Chr2g0321631 38.298 188 101 5 11 187 5 188 1.37e-36 132
MsaG009105 MtrunA17_Chr4g0026141 37.037 189 104 6 7 183 2 187 4.92e-34 126
MsaG009105 MtrunA17_Chr8g0345671 45.033 151 75 5 10 158 11 155 5.83e-33 126
MsaG009105 MtrunA17_Chr3g0113001 52.586 116 48 3 54 163 4 118 5.85e-33 124
MsaG009105 MtrunA17_Chr8g0345691 45.033 151 75 5 10 158 12 156 4.29e-31 121
MsaG009105 MtrunA17_Chr2g0321741 45.926 135 62 4 30 164 12 135 6.05e-31 120
MsaG009105 MtrunA17_Chr4g0050701 36.364 165 86 5 10 166 11 164 7.07e-31 115
MsaG009105 MtrunA17_Chr3g0113031 54.082 98 35 3 76 166 3 97 9.04e-29 112
MsaG009105 MtrunA17_Chr7g0266701 35.714 168 99 3 10 168 4 171 8.01e-28 109
MsaG009105 MtrunA17_Chr8g0345711 41.212 165 79 8 10 159 12 173 1.45e-27 106
MsaG009105 MtrunA17_Chr8g0345731 41.401 157 79 6 10 161 24 172 1.35e-25 101
MsaG009105 MtrunA17_Chr7g0243371 51.190 84 40 1 66 148 17 100 2.59e-24 95.9
MsaG009105 MtrunA17_Chr8g0345721 36.970 165 70 6 13 144 38 201 4.78e-22 92.4
MsaG009105 MtrunA17_Chr8g0345741 44.538 119 62 4 21 137 2 118 5.04e-22 90.9
MsaG009105 MtrunA17_Chr8g0384351 34.568 162 83 6 1 162 1 139 7.02e-22 91.3
MsaG009105 MtrunA17_Chr3g0130321 31.928 166 90 6 8 160 5 160 8.38e-21 89.0
MsaG009105 MtrunA17_Chr8g0345701 39.310 145 68 6 9 137 6 146 1.26e-20 87.8
MsaG009105 MtrunA17_Chr7g0251661 29.730 148 100 3 1 148 1 144 3.09e-16 75.1
MsaG009105 MtrunA17_Chr7g0251651 30.769 130 86 3 8 137 16 141 4.85e-13 67.0
MsaG009105 MtrunA17_Chr4g0040541 31.548 168 88 7 10 159 48 206 6.66e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG009105 AT1G79580.3 53.747 387 111 12 2 344 9 371 2.33e-115 339
MsaG009105 AT1G79580.5 53.747 387 111 12 2 344 9 371 2.33e-115 339
MsaG009105 AT1G79580.4 53.747 387 111 12 2 344 9 371 2.33e-115 339
MsaG009105 AT1G79580.2 53.747 387 111 12 2 344 9 371 2.33e-115 339
MsaG009105 AT1G79580.1 53.747 387 111 12 2 344 9 371 2.33e-115 339
MsaG009105 AT4G10350.1 48.936 329 140 8 2 314 1 317 6.81e-95 286
MsaG009105 AT2G18060.3 48.867 309 133 8 2 293 1 301 3.28e-91 277
MsaG009105 AT2G18060.1 48.867 309 133 8 2 293 1 301 3.28e-91 277
MsaG009105 AT4G36160.2 49.677 310 118 8 9 293 13 309 1.49e-89 273
MsaG009105 AT4G36160.1 49.677 310 118 8 9 293 9 305 1.76e-89 273
MsaG009105 AT4G36160.3 49.677 310 118 8 9 293 9 305 1.76e-89 273
MsaG009105 AT1G33280.1 75.974 154 34 2 10 163 8 158 3.18e-86 262
MsaG009105 AT2G46770.1 66.851 181 45 2 6 172 12 191 9.29e-86 263
MsaG009105 AT1G32770.1 47.771 314 110 8 5 291 11 297 2.91e-85 262
MsaG009105 AT3G61910.1 69.364 173 38 3 5 163 6 177 1.73e-82 254
MsaG009105 AT5G66300.1 46.026 302 125 7 9 296 11 288 8.13e-81 248
MsaG009105 AT1G12260.2 71.895 153 41 2 10 162 7 157 6.77e-78 242
MsaG009105 AT1G12260.1 71.895 153 41 2 10 162 7 157 1.00e-77 244
MsaG009105 AT1G62700.1 72.549 153 40 2 10 162 7 157 3.40e-77 242
MsaG009105 AT1G62700.2 72.549 153 40 2 10 162 7 157 3.40e-77 242
MsaG009105 AT1G71930.2 43.771 297 126 7 9 292 8 276 3.57e-75 235
MsaG009105 AT1G71930.1 43.771 297 126 7 9 292 8 276 3.57e-75 235
MsaG009105 AT5G62380.2 65.409 159 53 2 10 168 7 163 1.19e-74 234
MsaG009105 AT5G62380.1 65.409 159 53 2 10 168 7 163 1.19e-74 234
MsaG009105 AT4G10350.2 44.928 276 124 8 55 314 7 270 8.15e-63 202
MsaG009105 AT2G24430.2 55.215 163 69 2 7 168 13 172 1.14e-60 197
MsaG009105 AT2G24430.1 55.215 163 69 2 7 168 13 172 1.14e-60 197
MsaG009105 AT3G17730.1 53.939 165 73 3 8 171 4 166 3.44e-59 191
MsaG009105 AT3G18400.1 56.129 155 64 2 7 161 2 152 1.38e-58 192
MsaG009105 AT1G76420.1 55.128 156 66 2 7 161 19 171 4.89e-58 191
MsaG009105 AT1G69490.1 50.000 170 76 3 2 166 1 166 2.82e-57 187
MsaG009105 AT5G07680.2 56.688 157 61 3 8 161 1 153 8.04e-57 187
MsaG009105 AT5G07680.1 56.329 158 62 3 7 161 14 167 8.45e-57 187
MsaG009105 AT5G39610.1 53.333 165 70 3 1 162 11 171 1.15e-56 186
MsaG009105 AT1G65910.1 49.724 181 84 4 8 187 4 178 1.22e-56 194
MsaG009105 AT1G61110.1 46.154 182 82 2 4 172 10 188 4.15e-56 186
MsaG009105 AT5G17260.1 55.128 156 66 3 8 161 4 157 8.72e-56 189
MsaG009105 AT5G61430.1 55.063 158 64 3 7 161 13 166 1.02e-55 185
MsaG009105 AT1G77450.1 48.315 178 83 3 1 174 1 173 1.19e-55 182
MsaG009105 AT5G18270.2 36.774 310 158 9 4 280 14 318 2.04e-55 184
MsaG009105 AT3G03200.1 55.769 156 65 3 8 161 4 157 4.22e-55 187
MsaG009105 AT5G18270.1 36.452 310 159 9 4 280 14 318 6.97e-55 183
MsaG009105 AT3G04060.1 53.503 157 67 2 8 161 18 171 2.65e-54 181
MsaG009105 AT3G29035.1 54.037 161 67 3 2 159 16 172 3.63e-54 181
MsaG009105 AT3G15170.1 53.086 162 69 3 7 164 17 175 7.65e-54 179
MsaG009105 AT5G63790.2 48.295 176 80 3 6 175 56 226 8.09e-54 180
MsaG009105 AT5G63790.1 48.295 176 80 3 6 175 46 216 8.79e-54 179
MsaG009105 AT5G46590.1 55.063 158 68 2 6 161 2 158 1.48e-53 178
MsaG009105 AT5G08790.1 50.595 168 72 3 7 168 4 166 2.34e-53 177
MsaG009105 AT3G04070.2 45.455 198 85 4 1 178 1 195 3.02e-53 179
MsaG009105 AT1G54330.1 55.195 154 65 3 8 161 4 153 3.57e-53 177
MsaG009105 AT5G53950.1 53.205 156 66 3 10 161 17 169 1.09e-52 178
MsaG009105 AT4G27410.2 48.087 183 86 5 7 188 11 185 1.82e-52 175
MsaG009105 AT3G15500.1 49.686 159 75 3 7 164 11 165 2.96e-52 176
MsaG009105 AT3G15510.1 37.553 237 110 6 14 218 21 251 3.66e-52 177
MsaG009105 AT1G52890.1 49.686 159 75 3 7 164 11 165 8.33e-52 174
MsaG009105 AT5G46590.2 58.696 138 56 1 6 143 2 138 1.48e-51 172
MsaG009105 AT3G12977.1 52.229 157 69 3 7 161 15 167 2.80e-51 172
MsaG009105 AT3G10500.1 52.147 163 74 4 4 164 2 162 3.52e-51 178
MsaG009105 AT3G04070.1 42.991 214 83 5 1 178 1 211 3.68e-51 174
MsaG009105 AT1G01720.1 46.409 181 79 4 8 175 5 180 4.28e-51 172
MsaG009105 AT5G04410.1 51.534 163 75 4 4 164 2 162 5.38e-51 178
MsaG009105 AT5G24590.2 51.923 156 73 2 9 163 12 166 1.08e-50 175
MsaG009105 AT3G10490.1 49.133 173 80 4 9 175 26 196 5.97e-50 167
MsaG009105 AT2G33480.1 49.091 165 76 3 2 165 7 164 1.21e-49 167
MsaG009105 AT4G27410.3 45.685 197 87 6 7 188 11 202 1.70e-49 168
MsaG009105 AT4G17980.1 51.875 160 72 3 6 161 2 160 2.20e-49 166
MsaG009105 AT3G10480.1 51.592 157 72 3 9 163 26 180 3.48e-49 171
MsaG009105 AT4G17980.2 51.875 160 72 3 6 161 2 160 6.34e-49 166
MsaG009105 AT2G33480.2 48.171 164 77 3 2 165 7 162 9.17e-49 165
MsaG009105 AT5G39820.1 43.386 189 80 5 9 174 19 203 1.10e-48 167
MsaG009105 AT3G10490.2 50.617 162 76 3 4 163 21 180 1.65e-48 169
MsaG009105 AT5G13180.1 49.057 159 74 2 5 162 9 161 1.76e-48 164
MsaG009105 AT2G43000.1 48.101 158 76 3 12 167 20 173 1.36e-47 162
MsaG009105 AT3G10480.2 51.592 157 71 4 9 163 26 179 2.91e-47 166
MsaG009105 AT1G26870.1 46.951 164 73 3 12 164 18 178 3.13e-47 165
MsaG009105 AT1G56010.2 48.750 160 73 4 7 161 16 171 4.73e-47 162
MsaG009105 AT3G49530.2 47.742 155 79 2 9 162 12 165 7.32e-47 164
MsaG009105 AT3G49530.1 45.614 171 87 3 9 174 12 181 1.65e-46 164
MsaG009105 AT5G09330.5 40.359 223 121 6 6 220 2 220 1.65e-46 165
MsaG009105 AT5G09330.2 40.359 223 121 6 6 220 2 220 1.65e-46 165
MsaG009105 AT5G09330.4 40.359 223 121 6 6 220 2 220 1.65e-46 165
MsaG009105 AT5G09330.3 40.359 223 121 6 6 220 2 220 1.65e-46 165
MsaG009105 AT5G09330.1 40.359 223 121 6 6 220 2 220 1.65e-46 165
MsaG009105 AT4G28530.1 48.235 170 63 7 10 161 10 172 1.09e-44 157
MsaG009105 AT2G02450.1 43.956 182 88 3 10 191 51 218 1.24e-44 157
MsaG009105 AT3G10480.3 41.951 205 80 4 9 175 26 229 1.49e-44 160
MsaG009105 AT1G33060.2 47.337 169 84 4 9 174 23 189 1.71e-44 162
MsaG009105 AT1G33060.1 47.337 169 84 4 9 174 23 189 1.71e-44 162
MsaG009105 AT2G02450.2 43.956 182 88 3 10 191 51 218 1.98e-44 157
MsaG009105 AT1G52880.1 46.988 166 73 3 14 167 21 183 3.48e-44 154
MsaG009105 AT5G64060.1 43.182 176 93 4 6 176 2 175 1.11e-43 154
MsaG009105 AT1G32510.1 46.875 160 76 4 10 161 6 164 2.27e-43 151
MsaG009105 AT4G35580.1 49.682 157 74 4 9 163 8 161 9.47e-43 155
MsaG009105 AT4G35580.3 49.682 157 74 4 9 163 8 161 1.22e-42 155
MsaG009105 AT4G35580.2 49.682 157 74 4 9 163 8 161 1.31e-42 155
MsaG009105 AT5G22290.1 40.642 187 103 3 9 195 20 198 1.84e-42 150
MsaG009105 AT1G34190.1 43.709 151 82 3 12 161 18 166 4.17e-42 154
MsaG009105 AT2G27300.1 39.888 178 93 4 2 174 1 169 1.02e-41 148
MsaG009105 AT1G34180.3 46.212 132 69 2 12 143 18 147 3.45e-41 149
MsaG009105 AT2G17040.1 43.373 166 85 4 12 175 8 166 7.11e-41 144
MsaG009105 AT1G34180.1 46.212 132 69 2 12 143 18 147 7.47e-41 150
MsaG009105 AT5G04395.1 45.342 161 76 2 1 149 19 179 9.27e-40 139
MsaG009105 AT3G44290.2 43.791 153 75 4 12 164 16 157 3.83e-39 139
MsaG009105 AT1G34180.4 43.750 144 67 4 12 143 18 159 5.32e-39 144
MsaG009105 AT3G12910.1 40.884 181 84 5 12 174 23 198 8.02e-39 140
MsaG009105 AT1G34180.2 43.750 144 67 4 12 143 18 159 9.15e-39 145
MsaG009105 AT3G44290.1 43.791 153 75 4 12 164 16 157 2.10e-38 140
MsaG009105 AT2G18060.2 39.545 220 108 8 91 293 2 213 4.24e-37 135
MsaG009105 AT5G61430.2 58.586 99 37 2 66 161 6 103 4.09e-35 129
MsaG009105 AT1G32870.2 41.772 158 85 4 10 164 10 163 4.90e-34 131
MsaG009105 AT1G32870.1 41.772 158 85 4 10 164 10 163 5.45e-34 131
MsaG009105 AT1G32870.3 41.772 158 85 4 10 164 46 199 8.04e-34 131
MsaG009105 AT3G12977.2 54.128 109 44 3 55 161 10 114 2.20e-33 123
MsaG009105 AT1G56010.1 55.102 98 39 2 68 161 8 104 6.76e-32 120
MsaG009105 AT5G22380.1 36.364 176 98 5 7 173 4 174 9.65e-30 114
MsaG009105 AT3G44350.2 33.333 189 112 6 7 188 4 185 2.98e-29 113
MsaG009105 AT2G33480.3 50.000 106 51 2 61 165 3 107 4.25e-29 112
MsaG009105 AT5G64530.1 35.882 170 78 6 8 161 1 155 1.09e-26 104
MsaG009105 AT3G44350.1 37.415 147 82 4 7 148 4 145 1.28e-26 103
MsaG009105 AT5G64530.2 41.481 135 63 5 8 141 1 120 2.67e-26 102
MsaG009105 AT1G02230.1 40.698 172 87 8 11 174 4 168 2.35e-25 105
MsaG009105 AT4G28530.2 42.017 119 48 4 10 111 10 124 1.35e-24 102
MsaG009105 AT3G04420.2 41.860 129 71 4 11 137 4 130 1.54e-23 99.0
MsaG009105 AT3G04420.1 41.860 129 71 4 11 137 4 130 3.43e-23 99.0
MsaG009105 AT4G01520.1 37.195 164 93 6 11 169 5 163 3.45e-23 98.2
MsaG009105 AT4G01550.1 38.065 155 82 5 13 161 7 153 1.56e-22 98.6
MsaG009105 AT4G01540.3 37.423 163 90 7 13 169 7 163 2.16e-22 97.8
MsaG009105 AT4G01540.4 37.423 163 90 7 13 169 7 163 2.26e-22 97.4
MsaG009105 AT4G01540.2 37.423 163 90 7 13 169 7 163 2.76e-22 97.4
MsaG009105 AT4G01540.1 37.423 163 90 7 13 169 7 163 2.87e-22 97.8
MsaG009105 AT1G02250.1 42.424 132 66 5 11 137 4 130 1.56e-21 94.7
MsaG009105 AT2G43000.2 44.681 94 49 2 75 166 2 94 8.12e-21 89.4
MsaG009105 AT1G02220.1 41.667 132 70 5 8 137 1 127 9.23e-21 92.8
MsaG009105 AT3G10490.4 51.250 80 36 2 86 163 2 80 3.24e-20 90.5
MsaG009105 AT3G10490.3 51.250 80 36 2 86 163 2 80 3.24e-20 90.5
MsaG009105 AT5G50820.1 35.461 141 65 6 8 139 15 138 1.91e-18 82.8
MsaG009105 AT1G01010.1 34.839 155 85 7 13 158 6 153 6.10e-18 84.7
MsaG009105 AT5G22290.2 37.500 104 59 2 92 195 2 99 5.17e-16 77.0
MsaG009105 AT3G56530.1 28.387 155 105 4 7 159 49 199 1.40e-15 77.0
MsaG009105 AT5G14000.1 29.843 191 119 7 6 191 11 191 1.76e-15 74.7
MsaG009105 AT5G14000.2 30.882 136 86 3 6 139 11 140 3.39e-13 67.0
MsaG009105 AT3G55210.1 25.749 167 99 6 9 159 10 167 1.63e-12 67.4
MsaG009105 AT3G04430.1 35.075 134 71 5 16 137 6 135 5.81e-12 64.7

Find 77 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGTATTTCTTGTCCTTA+TGG 0.255246 2:-53039235 None:intergenic
TTTCCTCATTCCAATCCTTT+TGG 0.284680 2:-53039339 None:intergenic
TAACAGTTCCTCCAGGGTTT+AGG 0.294791 2:+53038385 MsaT009105.1:CDS
GAGCAACTACAGCTGGGTTT+TGG 0.302263 2:+53039276 MsaT009105.1:CDS
GGTGCAGCCTGGTGATTATT+AGG 0.325193 2:-53040084 None:intergenic
AATAACACTACCACCTTTGA+TGG 0.325590 2:+53039793 MsaT009105.1:CDS
TTTGGAATTGGTGTGATATA+TGG 0.337061 2:-53039321 None:intergenic
CTTCTTCTTCAATTTCTTGT+TGG 0.338565 2:-53039666 None:intergenic
TGCATGTGATGATGATGTTT+TGG 0.354863 2:-53039745 None:intergenic
ATGGAATGGATCTTAATCTA+AGG 0.360900 2:+53040043 MsaT009105.1:CDS
GGTACTGCTATAGCTGATTC+TGG 0.362952 2:-53039844 None:intergenic
CTATTTGTTCTTGTTCCTGT+TGG 0.367370 2:-53039254 None:intergenic
TGGTGGTGATTGGTCATTCT+TGG 0.375350 2:+53039999 MsaT009105.1:CDS
TATTTGTTCTTGTTCCTGTT+GGG 0.389319 2:-53039253 None:intergenic
TGATGATAATGCAGAAGTTC+AGG 0.405616 2:+53039442 MsaT009105.1:CDS
TTTGGTTCTAGAAAATGGTT+TGG 0.426326 2:-53039727 None:intergenic
ATCTCAACAGACTTGAGCCT+TGG 0.426871 2:+53038499 MsaT009105.1:CDS
GATAAGTGTAGGATTGGATC+AGG 0.432547 2:+53039185 MsaT009105.1:intron
GGATGTCCATTGATGAGTTA+TGG 0.436712 2:-53039879 None:intergenic
TCACAACCAAGGTAATGAAA+TGG 0.449921 2:-53040144 None:intergenic
ATGGTATTTCTTCAGCCATA+AGG 0.456519 2:+53039220 MsaT009105.1:CDS
CACACCAATTCCAAAAGGAT+TGG 0.463232 2:+53039329 MsaT009105.1:CDS
GAAGTTCCAACAGCAGTAGA+AGG 0.470021 2:-53040105 None:intergenic
ACAAATAGAGCAACTACAGC+TGG 0.470753 2:+53039269 MsaT009105.1:CDS
AAATTTCCATTTCATTACCT+TGG 0.472448 2:+53040138 MsaT009105.1:CDS
GTTGCAGATAAGTGTAGGAT+TGG 0.472884 2:+53039179 MsaT009105.1:intron
TCTCAACAGACTTGAGCCTT+GGG 0.476536 2:+53038500 MsaT009105.1:CDS
TTCCTTCCATAACTCATCAA+TGG 0.495467 2:+53039873 MsaT009105.1:CDS
AAGATGGATGGGTAGTATGC+AGG 0.497034 2:+53039611 MsaT009105.1:CDS
GCTGCACCTTCTACTGCTGT+TGG 0.514057 2:+53040099 MsaT009105.1:CDS
TCTGATAACATCAAGATCAA+TGG 0.515700 2:-53038469 None:intergenic
TACAGAATGATGCAAGGAAG+TGG 0.516848 2:+53038357 None:intergenic
GATGAGTTATGGAAGGAAGT+TGG 0.517420 2:-53039868 None:intergenic
TAAAGAAGCTCCTCATCAGT+TGG 0.517483 2:-53038414 None:intergenic
CATCATCACATGCAACAACT+AGG 0.517757 2:+53039754 MsaT009105.1:CDS
GGTTGATCAGTGGTGGTGAT+TGG 0.522276 2:+53039989 MsaT009105.1:CDS
GGAGAATTAACAGTTCCTCC+AGG 0.530256 2:+53038378 MsaT009105.1:CDS
CTCATGGTCACAAAACTGAC+TGG 0.530671 2:+53039390 MsaT009105.1:CDS
TATATCACACCAATTCCAAA+AGG 0.530691 2:+53039324 MsaT009105.1:CDS
AAGGACAAGAAATACCCAAC+AGG 0.531044 2:+53039239 MsaT009105.1:CDS
ACAACAACAAATACTAGCTC+AGG 0.532614 2:+53039931 MsaT009105.1:CDS
AATGCTCTCAAAATTTGTTG+AGG 0.538669 2:+53039905 MsaT009105.1:CDS
AAAGAAGCTCCTCATCAGTT+GGG 0.540956 2:-53038413 None:intergenic
TACACTGGACGTGCTCCTCA+TGG 0.542939 2:+53039374 MsaT009105.1:CDS
GACCATTTGTTGATCTCATG+TGG 0.545405 2:-53039705 None:intergenic
AGCAACAACAACAAGGAGAA+AGG 0.551906 2:+53039968 MsaT009105.1:CDS
AGATGGATGGGTAGTATGCA+GGG 0.553010 2:+53039612 MsaT009105.1:CDS
GAGAATTAACAGTTCCTCCA+GGG 0.560980 2:+53038379 MsaT009105.1:CDS
GATCAGGGCCACAAAATGAA+TGG 0.561417 2:+53039201 MsaT009105.1:CDS
AGCTTCTTTACTATTACTTG+AGG 0.562735 2:+53038427 MsaT009105.1:CDS
CAGCAGTAGAAGGTGCAGCC+TGG 0.565773 2:-53040095 None:intergenic
AACCACATGAGATCAACAAA+TGG 0.569176 2:+53039703 MsaT009105.1:CDS
ATTCCAAAAGGATTGGAATG+AGG 0.575697 2:+53039336 MsaT009105.1:CDS
TAGATGAATTGTACCATCAA+AGG 0.576851 2:-53039806 None:intergenic
ACTTGCATCACACAATGGAA+TGG 0.578666 2:+53040029 MsaT009105.1:CDS
TGTGTACCTTTGAGATCCCA+AGG 0.590405 2:-53038516 None:intergenic
TAGGTTCCACCCAACTGATG+AGG 0.590857 2:+53038404 MsaT009105.1:CDS
CAAATAGAGCAACTACAGCT+GGG 0.601722 2:+53039270 MsaT009105.1:CDS
GTCCATTGATGAGTTATGGA+AGG 0.603236 2:-53039875 None:intergenic
AAACTACTTGCATCACACAA+TGG 0.620814 2:+53040024 MsaT009105.1:CDS
CTCATGCAGCAACAACAACA+AGG 0.622496 2:+53039961 MsaT009105.1:CDS
CTTGAGCCTTGGGATCTCAA+AGG 0.623707 2:+53038510 MsaT009105.1:CDS
AAAACCTTAGTGTTCTACAC+TGG 0.630864 2:+53039359 MsaT009105.1:CDS
GGAGAAAGGTTGATCAGTGG+TGG 0.631877 2:+53039982 MsaT009105.1:CDS
GAAGCTCCTCATCAGTTGGG+TGG 0.635468 2:-53038410 None:intergenic
ACGTCCAGTGTAGAACACTA+AGG 0.638176 2:-53039363 None:intergenic
TAACACTCCTAATAATCACC+AGG 0.641336 2:+53040077 MsaT009105.1:CDS
TCTGTATACAGAATGATGCA+AGG 0.648961 2:+53038351 None:intergenic
GAGTTATGGAAGGAAGTTGG+TGG 0.649529 2:-53039865 None:intergenic
ATGAATTGTACCATCAAAGG+TGG 0.652155 2:-53039803 None:intergenic
GTTGGGTGGAACCTAAACCC+TGG 0.653580 2:-53038396 None:intergenic
GATTCTGGACTGAACAATTG+TGG 0.660692 2:-53039829 None:intergenic
CACTTGTTGCAGATAAGTGT+AGG 0.683334 2:+53039174 MsaT009105.1:intron
CAAGGAGAAAGGTTGATCAG+TGG 0.686081 2:+53039979 MsaT009105.1:CDS
ATAAGTGTAGGATTGGATCA+GGG 0.691336 2:+53039186 MsaT009105.1:CDS
TATCATGAGACTCACAACCA+AGG 0.694185 2:-53040155 None:intergenic
GGGTGGAACCTAAACCCTGG+AGG 0.757480 2:-53038393 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 53038363 53040197 53038363 ID=MsaG009105
Chr2 mRNA 53038363 53040197 53038363 ID=MsaT009105.1;Parent=MsaG009105
Chr2 exon 53038363 53038531 53038363 ID=MsaT009105.1.exon1;Parent=MsaT009105.1
Chr2 CDS 53038363 53038531 53038363 ID=cds.MsaT009105.1;Parent=MsaT009105.1
Chr2 exon 53039186 53039463 53039186 ID=MsaT009105.1.exon2;Parent=MsaT009105.1
Chr2 CDS 53039186 53039463 53039186 ID=cds.MsaT009105.1;Parent=MsaT009105.1
Chr2 exon 53039610 53040197 53039610 ID=MsaT009105.1.exon3;Parent=MsaT009105.1
Chr2 CDS 53039610 53040197 53039610 ID=cds.MsaT009105.1;Parent=MsaT009105.1
Gene Sequence

>MsaT009105.1

ATGATGCAAGGAAGTGGAGAATTAACAGTTCCTCCAGGGTTTAGGTTCCACCCAACTGATGAGGAGCTTCTTTACTATTACTTGAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTTATCAGAGAAGTTGATCTCAACAGACTTGAGCCTTGGGATCTCAAAGATAAGTGTAGGATTGGATCAGGGCCACAAAATGAATGGTATTTCTTCAGCCATAAGGACAAGAAATACCCAACAGGAACAAGAACAAATAGAGCAACTACAGCTGGGTTTTGGAAAGCAACAGGAAGAGACAAAGCCATATATCACACCAATTCCAAAAGGATTGGAATGAGGAAAACCTTAGTGTTCTACACTGGACGTGCTCCTCATGGTCACAAAACTGACTGGATCATGCATGAGTACCGTCTTGATGATGATGATGATAATGCAGAAGTTCAGGAAGATGGATGGGTAGTATGCAGGGTATTCAAAAAGAAAAACACAAACAGAAGCTACCAACAAGAAATTGAAGAAGAAGATCATCACATGATTAACCACATGAGATCAACAAATGGTCCAAACCATTTTCTAGAACCAAAACATCATCATCACATGCAACAACTAGGACTATATGATTACAACAATAACACTACCACCTTTGATGGTACAATTCATCTACCACAATTGTTCAGTCCAGAATCAGCTATAGCAGTACCACCAACTTCCTTCCATAACTCATCAATGGACATCCTTGAATGCTCTCAAAATTTGTTGAGGCTCACAACAACAAATACTAGCTCAGGACTTAATCTCATGCAGCAACAACAACAAGGAGAAAGGTTGATCAGTGGTGGTGATTGGTCATTCTTGGATAAACTACTTGCATCACACAATGGAATGGATCTTAATCTAAGGAACAAATTATGTAACACTCCTAATAATCACCAGGCTGCACCTTCTACTGCTGTTGGAACTTCTTCAGCTCAGAAATTTCCATTTCATTACCTTGGTTGTGAGTCTCATGATATTATGAAATTTTCAAAGTAA
Protein sequence

>MsaT009105.1

MMQGSGELTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNRLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGHKTDWIMHEYRLDDDDDNAEVQEDGWVVCRVFKKKNTNRSYQQEIEEEDHHMINHMRSTNGPNHFLEPKHHHHMQQLGLYDYNNNTTTFDGTIHLPQLFSPESAIAVPPTSFHNSSMDILECSQNLLRLTTTNTSSGLNLMQQQQQGERLISGGDWSFLDKLLASHNGMDLNLRNKLCNTPNNHQAAPSTAVGTSSAQKFPFHYLGCESHDIMKFSK*