AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG009168

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG009168 MtrunA17_Chr2g0310011 90.957 376 5 2 1 375 1 348 0.0 690
MsaG009168 MtrunA17_Chr8g0356501 63.918 388 84 16 1 375 1 345 6.78e-149 424
MsaG009168 MtrunA17_Chr2g0321461 56.213 169 57 3 25 176 35 203 1.59e-52 179
MsaG009168 MtrunA17_Chr5g0409731 53.988 163 60 4 22 171 10 170 1.11e-51 174
MsaG009168 MtrunA17_Chr6g0461641 54.878 164 61 2 28 178 35 198 5.26e-51 175
MsaG009168 MtrunA17_Chr4g0042451 54.839 155 60 3 28 173 10 163 1.16e-49 170
MsaG009168 MtrunA17_Chr5g0417521 55.280 161 55 3 28 175 8 164 2.84e-49 169
MsaG009168 MtrunA17_Chr1g0197171 51.397 179 74 4 14 183 23 197 3.11e-47 162
MsaG009168 MtrunA17_Chr2g0290991 52.632 171 69 4 23 183 27 195 3.61e-47 162
MsaG009168 MtrunA17_Chr7g0254981 55.405 148 62 3 35 181 50 194 5.88e-45 156
MsaG009168 MtrunA17_Chr2g0291021 57.746 142 52 3 35 173 49 185 2.35e-43 153
MsaG009168 MtrunA17_Chr7g0261911 48.529 136 59 3 35 166 262 390 6.05e-34 131
MsaG009168 MtrunA17_Chr7g0274471 41.772 158 81 3 35 189 218 367 2.00e-33 129
MsaG009168 MtrunA17_Chr1g0190301 45.070 142 75 2 25 166 165 303 4.94e-33 127
MsaG009168 MtrunA17_Chr1g0175091 43.571 140 74 1 31 170 254 388 1.87e-30 120
MsaG009168 MtrunA17_Chr7g0258551 37.640 178 98 5 31 201 208 379 1.59e-28 114
MsaG009168 MtrunA17_Chr7g0242521 44.853 136 60 3 35 163 13 140 3.74e-27 107
MsaG009168 MtrunA17_Chr1g0175071 38.462 156 84 2 25 176 167 314 2.16e-25 104
MsaG009168 MtrunA17_Chr1g0162931 39.062 128 58 3 36 143 19 146 4.70e-16 77.8
MsaG009168 MtrunA17_Chr3g0095611 61.111 54 21 0 35 88 19 72 6.50e-16 75.9
MsaG009168 MtrunA17_Chr6g0479431 56.667 60 26 0 36 95 203 262 2.14e-15 76.6
MsaG009168 MtrunA17_Chr7g0243081 44.444 81 45 0 11 91 47 127 2.75e-15 76.3
MsaG009168 MtrunA17_Chr2g0288601 61.111 54 21 0 36 89 72 125 2.93e-15 72.0
MsaG009168 MtrunA17_Chr1g0210911 56.452 62 22 1 36 92 23 84 3.88e-15 75.9
MsaG009168 MtrunA17_Chr3g0109981 51.429 70 34 0 36 105 275 344 4.27e-15 76.6
MsaG009168 MtrunA17_Chr1g0154261 52.239 67 32 0 36 102 127 193 5.22e-15 74.7
MsaG009168 MtrunA17_Chr8g0366281 58.929 56 23 0 36 91 174 229 6.19e-15 75.5
MsaG009168 MtrunA17_Chr5g0410741 58.929 56 23 0 36 91 220 275 8.68e-15 75.1
MsaG009168 MtrunA17_Chr1g0175081 49.091 55 28 0 37 91 24 78 1.06e-14 69.7
MsaG009168 MtrunA17_Chr8g0379121 53.571 56 26 0 36 91 112 167 3.78e-14 73.6
MsaG009168 MtrunA17_Chr2g0320231 55.357 56 25 0 36 91 98 153 7.29e-14 72.4
MsaG009168 MtrunA17_Chr7g0258531 36.364 132 72 4 35 161 213 337 9.28e-14 72.0
MsaG009168 MtrunA17_Chr1g0161431 61.818 55 20 1 35 89 200 253 2.51e-13 71.2
MsaG009168 MtrunA17_Chr4g0031961 52.174 69 31 2 22 89 117 184 7.34e-13 68.6
MsaG009168 MtrunA17_Chr2g0283951 58.000 50 21 0 36 85 90 139 7.54e-13 69.3
MsaG009168 MtrunA17_Chr4g0067981 57.627 59 24 1 31 89 211 268 7.57e-13 70.1
MsaG009168 MtrunA17_Chr1g0198601 60.000 55 22 0 35 89 211 265 1.02e-12 68.9
MsaG009168 MtrunA17_Chr2g0294911 53.333 60 27 1 30 89 206 264 1.11e-12 69.3
MsaG009168 MtrunA17_Chr7g0255711 60.000 55 21 1 35 89 91 144 1.83e-12 67.4
MsaG009168 MtrunA17_Chr5g0402631 60.000 55 22 0 35 89 214 268 4.12e-12 66.6
MsaG009168 MtrunA17_Chr4g0009901 52.542 59 27 1 31 89 164 221 1.02e-11 64.7
MsaG009168 MtrunA17_Chr5g0422621 58.182 55 23 0 35 89 198 252 1.40e-11 65.1
MsaG009168 MtrunA17_Chr4g0009981 53.448 58 26 1 31 88 112 168 5.28e-11 62.4
MsaG009168 MtrunA17_Chr4g0045361 55.172 58 26 0 32 89 271 328 5.75e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG009168 AT1G79430.2 56.633 392 116 15 4 375 1 358 1.78e-124 363
MsaG009168 AT1G79430.1 51.070 327 108 14 67 375 1 293 2.61e-81 251
MsaG009168 AT3G12730.1 71.711 152 38 3 24 170 12 163 4.02e-70 220
MsaG009168 AT4G13640.1 64.634 164 49 1 25 179 27 190 5.75e-64 206
MsaG009168 AT3G24120.1 67.702 161 35 4 24 171 30 186 1.05e-62 203
MsaG009168 AT4G13640.2 63.473 167 49 2 25 179 27 193 6.64e-62 201
MsaG009168 AT3G24120.2 66.463 164 35 5 24 171 30 189 1.51e-60 197
MsaG009168 AT3G04030.3 60.355 169 53 4 24 179 34 201 5.82e-57 191
MsaG009168 AT5G18240.1 60.947 169 52 4 24 179 34 201 2.37e-56 189
MsaG009168 AT5G18240.4 60.947 169 52 4 24 179 34 201 2.37e-56 189
MsaG009168 AT3G04030.2 59.172 169 54 5 24 179 34 200 5.98e-54 183
MsaG009168 AT5G18240.5 59.763 169 52 5 24 179 34 199 5.37e-53 181
MsaG009168 AT3G04030.1 57.396 169 52 5 24 179 34 195 1.94e-50 174
MsaG009168 AT5G18240.2 57.988 169 51 5 24 179 34 195 9.75e-50 172
MsaG009168 AT5G18240.3 57.988 169 51 5 24 179 34 195 9.75e-50 172
MsaG009168 AT1G69580.1 46.117 206 83 6 27 215 26 220 1.82e-48 167
MsaG009168 AT1G69580.2 45.631 206 85 5 27 215 26 221 2.91e-48 167
MsaG009168 AT5G45580.2 47.853 163 68 2 25 171 13 174 1.47e-43 152
MsaG009168 AT5G45580.1 43.716 183 86 2 29 195 1 182 1.62e-42 149
MsaG009168 AT2G01060.1 56.338 142 53 3 35 173 15 150 1.85e-42 150
MsaG009168 AT3G12730.2 64.220 109 34 3 67 170 1 109 2.41e-39 138
MsaG009168 AT3G13040.3 44.785 163 75 5 21 170 218 378 5.09e-34 131
MsaG009168 AT3G13040.1 44.785 163 75 5 21 170 218 378 5.09e-34 131
MsaG009168 AT3G13040.2 44.785 163 75 5 21 170 218 378 5.09e-34 131
MsaG009168 AT5G06800.2 46.269 134 69 2 35 166 192 324 1.07e-31 123
MsaG009168 AT4G28610.1 45.588 136 64 3 35 166 225 354 1.68e-31 123
MsaG009168 AT5G06800.1 47.368 133 64 3 35 166 192 319 4.34e-31 122
MsaG009168 AT5G29000.1 40.964 166 93 4 35 199 188 349 8.29e-31 121
MsaG009168 AT5G29000.3 40.964 166 93 4 35 199 188 349 8.29e-31 121
MsaG009168 AT5G29000.2 40.964 166 93 4 35 199 231 392 1.60e-30 121
MsaG009168 AT3G04030.5 54.762 126 43 4 67 179 1 125 6.64e-30 117
MsaG009168 AT3G04450.4 40.000 155 79 3 35 183 198 344 2.05e-29 117
MsaG009168 AT3G04450.2 40.000 155 79 3 35 183 198 344 2.05e-29 117
MsaG009168 AT3G04450.1 40.000 155 79 3 35 183 238 384 2.62e-29 118
MsaG009168 AT2G20400.2 42.000 150 79 3 35 181 231 375 2.38e-26 109
MsaG009168 AT2G20400.1 41.333 150 79 2 35 181 231 374 5.82e-26 108
MsaG009168 AT3G04030.4 50.794 126 42 5 67 179 1 119 1.18e-23 100
MsaG009168 AT5G18240.6 50.794 126 42 5 67 179 1 119 3.20e-23 99.4
MsaG009168 AT2G06020.1 59.375 64 26 0 28 91 79 142 8.46e-21 92.0
MsaG009168 AT2G01060.2 48.598 107 46 3 70 173 1 101 2.54e-20 89.4
MsaG009168 AT5G06800.3 59.649 57 23 0 35 91 192 248 3.14e-18 84.3
MsaG009168 AT5G29000.4 57.895 57 24 0 35 91 231 287 3.06e-17 82.0
MsaG009168 AT3G04450.3 56.140 57 25 0 35 91 238 294 3.22e-17 82.0
MsaG009168 AT1G14600.1 50.685 73 31 1 21 88 4 76 2.25e-16 78.6
MsaG009168 AT2G40260.1 60.714 56 22 0 36 91 83 138 8.24e-16 79.0
MsaG009168 AT4G04605.1 58.491 53 22 0 36 88 15 67 1.03e-15 75.9
MsaG009168 AT2G42660.1 58.929 56 23 0 36 91 51 106 1.06e-15 76.6
MsaG009168 AT2G02060.2 57.627 59 25 0 34 92 28 86 2.71e-15 75.5
MsaG009168 AT2G02060.1 57.627 59 25 0 34 92 28 86 2.71e-15 75.5
MsaG009168 AT5G16560.1 56.667 60 26 0 36 95 220 279 6.63e-15 75.9
MsaG009168 AT1G32240.2 56.667 60 26 0 36 95 214 273 6.77e-15 75.9
MsaG009168 AT1G32240.1 56.667 60 26 0 36 95 214 273 8.19e-15 75.5
MsaG009168 AT5G42630.2 57.143 56 24 0 36 91 106 161 1.71e-14 72.4
MsaG009168 AT2G38300.1 57.143 56 24 0 36 91 55 110 1.71e-14 74.3
MsaG009168 AT5G42630.1 57.143 56 24 0 36 91 106 161 2.47e-14 73.2
MsaG009168 AT4G17695.1 32.727 110 74 0 36 145 165 274 3.11e-14 73.2
MsaG009168 AT3G46640.2 54.286 70 28 2 23 89 129 197 2.12e-13 70.9
MsaG009168 AT3G46640.1 54.286 70 28 2 23 89 129 197 2.12e-13 70.9
MsaG009168 AT3G46640.3 54.286 70 28 2 23 89 129 197 3.04e-13 70.5
MsaG009168 AT5G59570.2 52.857 70 29 2 23 89 126 194 4.55e-13 69.7
MsaG009168 AT5G59570.1 52.857 70 29 2 23 89 126 194 4.55e-13 69.7
MsaG009168 AT4G04580.1 49.123 57 29 0 36 92 15 71 6.45e-13 66.6
MsaG009168 AT5G05090.1 60.000 55 21 1 35 89 81 134 7.59e-13 68.6
MsaG009168 AT3G10760.1 60.000 55 21 1 35 89 105 158 9.87e-13 68.9
MsaG009168 AT4G37180.1 55.172 58 26 0 37 94 212 269 1.53e-12 68.6
MsaG009168 AT4G37180.2 55.172 58 26 0 37 94 219 276 1.74e-12 68.6
MsaG009168 AT2G40970.1 60.000 55 21 1 35 89 105 158 2.33e-12 66.6
MsaG009168 AT3G16857.3 56.364 55 23 1 35 89 167 220 6.16e-12 67.4
MsaG009168 AT3G16857.1 56.364 55 23 1 35 89 237 290 7.61e-12 67.4
MsaG009168 AT3G16857.2 56.364 55 23 1 35 89 237 290 7.73e-12 67.4
MsaG009168 AT5G58080.1 55.172 58 25 1 32 89 191 247 9.01e-12 67.0
MsaG009168 AT3G25790.1 60.000 50 20 0 40 89 201 250 9.04e-12 66.2
MsaG009168 AT2G01760.3 54.545 55 24 1 35 89 135 188 1.09e-11 65.9
MsaG009168 AT1G49560.1 60.000 55 22 0 35 89 192 246 1.57e-11 65.5
MsaG009168 AT2G01760.1 54.545 55 24 1 35 89 200 253 1.94e-11 65.5
MsaG009168 AT2G01760.2 54.545 55 24 1 35 89 228 281 2.87e-11 65.1
MsaG009168 AT5G44190.1 40.964 83 41 2 35 117 147 221 4.64e-11 64.3
MsaG009168 AT5G44190.2 40.964 83 41 2 35 117 147 221 5.21e-11 63.9
MsaG009168 AT1G13300.1 54.545 55 25 0 35 89 181 235 8.80e-11 63.2

Find 97 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGGACTATTGAAAGAATT+TGG 0.175321 2:-54370223 MsaT009168.1:CDS
GATTTAAGGCTTCAAGATTT+AGG 0.193912 2:-54369983 MsaT009168.1:CDS
TGCTACAACTAATAACTTAA+AGG 0.195092 2:-54370278 MsaT009168.1:CDS
TAATGTGGAGTGATGATTTA+AGG 0.215191 2:-54369997 MsaT009168.1:CDS
AAATCATCACTCCACATTAA+TGG 0.218919 2:+54370001 None:intergenic
TTTCTATTACATAGAAATTT+AGG 0.227246 2:-54371175 MsaT009168.1:intron
TTCATAGTTGAAGGCTTCTT+TGG 0.249952 2:+54371825 None:intergenic
AACTTAAAGGGCGTTGTTCT+TGG 0.261188 2:-54370265 MsaT009168.1:CDS
CCACTATAAGGGTTAGTGTT+AGG 0.267537 2:+54370037 None:intergenic
GCATATATGCATGATGATCT+AGG 0.285163 2:+54370101 None:intergenic
ATTTAAGGCTTCAAGATTTA+GGG 0.292742 2:-54369982 MsaT009168.1:CDS
AATCATCACTCCACATTAAT+GGG 0.299412 2:+54370002 None:intergenic
TAAAACTATCATGAGGGTTA+TGG 0.306320 2:-54371539 MsaT009168.1:CDS
GAAATACATGCAAAGTATAT+TGG 0.312337 2:-54370341 MsaT009168.1:CDS
ATTCAATGATCACTCAATTA+AGG 0.327183 2:-54371129 MsaT009168.1:CDS
GTCCAACGAAGACGAGGTTT+TGG 0.340512 2:+54371744 None:intergenic
TCAAATTGCACCACCATCAT+TGG 0.344106 2:-54369915 MsaT009168.1:CDS
CCATCTCAAGAGCCATCTTC+AGG 0.344761 2:-54371494 MsaT009168.1:intron
TGAAGAGATGGCCCTCTTCT+TGG 0.346647 2:+54369776 None:intergenic
TATGATTAGTACTGGTACTA+TGG 0.347038 2:-54369735 MsaT009168.1:CDS
CACTATAAGGGTTAGTGTTA+GGG 0.355596 2:+54370038 None:intergenic
AAAGCTTATCAGACACTTGC+AGG 0.356175 2:-54370316 MsaT009168.1:CDS
GCTTCCTCTTCGGCTATGAT+TGG 0.358723 2:-54370950 MsaT009168.1:CDS
ACCTCATGGAATGGCTGAAA+TGG 0.378868 2:-54370242 MsaT009168.1:CDS
GAGCTTCAATTCGTAGTTGA+AGG 0.381017 2:+54370368 None:intergenic
AAAACTATCATGAGGGTTAT+GGG 0.387308 2:-54371538 MsaT009168.1:CDS
AAAATTTCCCCTTGAAGTAA+AGG 0.387443 2:+54369848 None:intergenic
ACTAACCCTTATAGTGGAAA+TGG 0.388772 2:-54370031 MsaT009168.1:CDS
CAGCATCAACAAAACGTTCA+TGG 0.392478 2:+54371712 None:intergenic
CAAGGTAGAGGCTCACCATT+TGG 0.401119 2:-54369710 MsaT009168.1:CDS
GATACAAAGCCTTTACTTCA+AGG 0.414154 2:-54369857 MsaT009168.1:CDS
TCATGTGAATTCATAGTTGA+AGG 0.417635 2:+54371816 None:intergenic
CCTAACACTAACCCTTATAG+TGG 0.433462 2:-54370037 MsaT009168.1:CDS
GGCGTTGTTCTTGGACCTCA+TGG 0.435582 2:-54370256 MsaT009168.1:CDS
ATGAGGGTTATGGGTGTAAA+GGG 0.439033 2:-54371529 MsaT009168.1:CDS
GTTGATGCTGTTACTCAGCT+TGG 0.442902 2:-54371699 MsaT009168.1:CDS
CATGAGGGTTATGGGTGTAA+AGG 0.448006 2:-54371530 MsaT009168.1:CDS
AGGGACAGCTTCATCATGCT+TGG 0.454830 2:-54369963 MsaT009168.1:CDS
TTTGTATTCAAACCTGAAGA+TGG 0.457979 2:+54371482 None:intergenic
TAAGGGTTAGTGTTAGGGTT+AGG 0.458671 2:+54370043 None:intergenic
ACGGAATACTGCTTCCTCTT+CGG 0.462582 2:-54370960 MsaT009168.1:CDS
GCTACAACTAATAACTTAAA+GGG 0.463497 2:-54370277 MsaT009168.1:CDS
CATATATGCATGATGATCTA+GGG 0.467621 2:+54370102 None:intergenic
TGAAAAGATGTAAAACTAAG+AGG 0.472361 2:+54370196 None:intergenic
GTGATCATTGAATTCCTTGT+GGG 0.478768 2:+54371139 None:intergenic
ACTTAAGCCTTGGCAAGAAA+AGG 0.483728 2:-54370066 MsaT009168.1:CDS
ATAGTACCAGTACTAATCAT+AGG 0.485418 2:+54369737 None:intergenic
CACCACCACCGCCTCCGAAA+AGG 0.487952 2:+54370164 None:intergenic
ATAGTTGAAGGCTTCTTTGG+AGG 0.491992 2:+54371828 None:intergenic
ATAACTAATTCTCATCCAAA+TGG 0.494435 2:+54369695 None:intergenic
ATTACATAGAAATTTAGGCT+TGG 0.496295 2:-54371170 MsaT009168.1:intron
GATAGACCCATGTGTGTTCA+AGG 0.496295 2:-54371795 MsaT009168.1:CDS
CCTCATGGAATGGCTGAAAT+GGG 0.498758 2:-54370241 MsaT009168.1:CDS
ATACAAAGCCTTTACTTCAA+GGG 0.499005 2:-54369856 MsaT009168.1:CDS
TAGTTGAAGGCTTCTTTGGA+GGG 0.504455 2:+54371829 None:intergenic
TGAATTTGATCACCTTTGAA+AGG 0.506520 2:+54369935 None:intergenic
ATGGCTCTTGAGATGGTAAA+GGG 0.513730 2:+54371501 None:intergenic
ATGAGTCCTATGATTAGTAC+TGG 0.525466 2:-54369743 MsaT009168.1:CDS
ACCCAAAACCTCGTCTTCGT+TGG 0.527604 2:-54371746 MsaT009168.1:CDS
GATGGCCCTCTTCTTGGTGA+GGG 0.531501 2:+54369782 None:intergenic
TACAAAGCCTTTACTTCAAG+GGG 0.533890 2:-54369855 MsaT009168.1:CDS
TCACTTCCTCTATCCAATGA+TGG 0.535417 2:+54369902 None:intergenic
GATGGCTCTTGAGATGGTAA+AGG 0.536000 2:+54371500 None:intergenic
TGTTCTTGGACCTCATGGAA+TGG 0.536570 2:-54370251 MsaT009168.1:CDS
AGATGGCCCTCTTCTTGGTG+AGG 0.537995 2:+54369781 None:intergenic
GCACCACCATCATTGGATAG+AGG 0.539525 2:-54369908 MsaT009168.1:CDS
ATCAATGAGAACTTAAGCCT+TGG 0.540269 2:-54370076 MsaT009168.1:CDS
ATGTGTGTTCAAGGTGACTC+AGG 0.543370 2:-54371786 MsaT009168.1:CDS
GGTACTATGGCACAAGGTAG+AGG 0.548888 2:-54369722 MsaT009168.1:CDS
CCTGAAGATGGCTCTTGAGA+TGG 0.549039 2:+54371494 None:intergenic
TGCTTGGATGATCCTTTCAA+AGG 0.557843 2:-54369947 MsaT009168.1:CDS
GATGCTGTTACTCAGCTTGG+AGG 0.559349 2:-54371696 MsaT009168.1:CDS
CAACTACGAATTGAAGCTCA+AGG 0.565636 2:-54370364 MsaT009168.1:CDS
ATGCATACTCATTCATGTTG+CGG 0.570245 2:+54370927 None:intergenic
ATTCTTTCAGCATGAAGAGA+TGG 0.571803 2:+54369764 None:intergenic
GACACTTGCAGGTGAAAACA+TGG 0.571973 2:-54370305 MsaT009168.1:CDS
CTTCAGCTTTAGAACTGCAA+CGG 0.582298 2:-54370979 MsaT009168.1:CDS
TGAGTCACCTTGAACACACA+TGG 0.598179 2:+54371788 None:intergenic
GAAAGACCCTCACCAAGAAG+AGG 0.599610 2:-54369788 MsaT009168.1:CDS
AATGATCACTCAATTAAGGA+TGG 0.602702 2:-54371125 MsaT009168.1:CDS
TCAATTAAGGATGGTATGAG+AGG 0.611305 2:-54371116 MsaT009168.1:intron
AAAGACCCTCACCAAGAAGA+GGG 0.613710 2:-54369787 MsaT009168.1:CDS
GCTTGGAAAGCAACCCCACA+AGG 0.615422 2:-54371153 MsaT009168.1:CDS
CCACTCCTAAAACTATCATG+AGG 0.619863 2:-54371546 MsaT009168.1:CDS
ACTTGACCTTCAGCAAAACA+TGG 0.622471 2:-54370134 MsaT009168.1:CDS
TGATCATTGAATTCCTTGTG+GGG 0.623211 2:+54371140 None:intergenic
AACTACGAATTGAAGCTCAA+GGG 0.632870 2:-54370363 MsaT009168.1:CDS
CACTCCTAAAACTATCATGA+GGG 0.634268 2:-54371545 MsaT009168.1:CDS
AGTGATCATTGAATTCCTTG+TGG 0.639862 2:+54371138 None:intergenic
TCAACAGTCCAACGAAGACG+AGG 0.644546 2:+54371738 None:intergenic
TGTAATCAGGATGCAAATTG+AGG 0.645996 2:-54370711 MsaT009168.1:intron
CCCATTTCAGCCATTCCATG+AGG 0.656331 2:+54370241 None:intergenic
CTTCCTCTATCCAATGATGG+TGG 0.659128 2:+54369905 None:intergenic
GCGGCCAATCATAGCCGAAG+AGG 0.663510 2:+54370946 None:intergenic
AAGACTACATGAGCAACTTG+AGG 0.669000 2:-54370681 MsaT009168.1:intron
GAGTCACCTTGAACACACAT+GGG 0.682407 2:+54371789 None:intergenic
AGTACTGGTACTATGGCACA+AGG 0.707110 2:-54369728 MsaT009168.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 54369706 54371865 54369706 ID=MsaG009168
Chr2 mRNA 54369706 54371865 54369706 ID=MsaT009168.1;Parent=MsaG009168
Chr2 exon 54369706 54370401 54369706 ID=MsaT009168.1.exon6;Parent=MsaT009168.1
Chr2 CDS 54369706 54370401 54369706 ID=cds.MsaT009168.1;Parent=MsaT009168.1
Chr2 exon 54370682 54370724 54370682 ID=MsaT009168.1.exon5;Parent=MsaT009168.1
Chr2 CDS 54370682 54370724 54370682 ID=cds.MsaT009168.1;Parent=MsaT009168.1
Chr2 exon 54370935 54371001 54370935 ID=MsaT009168.1.exon4;Parent=MsaT009168.1
Chr2 CDS 54370935 54371001 54370935 ID=cds.MsaT009168.1;Parent=MsaT009168.1
Chr2 exon 54371117 54371183 54371117 ID=MsaT009168.1.exon3;Parent=MsaT009168.1
Chr2 CDS 54371117 54371183 54371117 ID=cds.MsaT009168.1;Parent=MsaT009168.1
Chr2 exon 54371495 54371571 54371495 ID=MsaT009168.1.exon2;Parent=MsaT009168.1
Chr2 CDS 54371495 54371571 54371495 ID=cds.MsaT009168.1;Parent=MsaT009168.1
Chr2 exon 54371688 54371865 54371688 ID=MsaT009168.1.exon1;Parent=MsaT009168.1
Chr2 CDS 54371688 54371865 54371688 ID=cds.MsaT009168.1;Parent=MsaT009168.1
Gene Sequence

>MsaT009168.1

ATGGAAAGAATGTTCCCTCCAAAGAAGCCTTCAACTATGAATTCACATGATAGACCCATGTGTGTTCAAGGTGACTCAGGTCTTGTTCTTACAACTGACCCAAAACCTCGTCTTCGTTGGACTGTTGAACTCCATGAACGTTTTGTTGATGCTGTTACTCAGCTTGGAGGACCTGACAAGGCCACTCCTAAAACTATCATGAGGGTTATGGGTGTAAAGGGTCTTACCCTTTACCATCTCAAGAGCCATCTTCAGAAATTTAGGCTTGGAAAGCAACCCCACAAGGAATTCAATGATCACTCAATTAAGGATGGTATGAGAGCTTCAGCTTTAGAACTGCAACGGAATACTGCTTCCTCTTCGGCTATGATTGGCCGCAACATGAATGAGATGCAAATTGAGGTGCAGAGAAGACTACATGAGCAACTTGAGGTACAAAAACACCTTCAACTACGAATTGAAGCTCAAGGGAAATACATGCAAAGTATATTGGAAAAAGCTTATCAGACACTTGCAGGTGAAAACATGGCATCTGCTACAACTAATAACTTAAAGGGCGTTGTTCTTGGACCTCATGGAATGGCTGAAATGGGACTATTGAAAGAATTTGGTTCACCTCTTAGTTTTACATCTTTTCAAGATCTTGACCTTTTCGGAGGCGGTGGTGGTGGTGATCAACTTGACCTTCAGCAAAACATGGACAAGCAAACCCTAGATCATCATGCATATATGCAAATCAATGAGAACTTAAGCCTTGGCAAGAAAAGGCCTAACCCTAACACTAACCCTTATAGTGGAAATGGAAAAAACCCATTAATGTGGAGTGATGATTTAAGGCTTCAAGATTTAGGGACAGCTTCATCATGCTTGGATGATCCTTTCAAAGGTGATCAAATTCAAATTGCACCACCATCATTGGATAGAGGAAGTGATATTGAAACTATAGATATTTATGATACAAAGCCTTTACTTCAAGGGGAAATTTTAGGTGAAAAGAAATTTGATGCATCTATGAATAAACTTGAAAGACCCTCACCAAGAAGAGGGCCATCTCTTCATGCTGAAAGAATGAGTCCTATGATTAGTACTGGTACTATGGCACAAGGTAGAGGCTCACCATTTGGATGA
Protein sequence

>MsaT009168.1

MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTASSSAMIGRNMNEMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASATTNNLKGVVLGPHGMAEMGLLKEFGSPLSFTSFQDLDLFGGGGGGDQLDLQQNMDKQTLDHHAYMQINENLSLGKKRPNPNTNPYSGNGKNPLMWSDDLRLQDLGTASSCLDDPFKGDQIQIAPPSLDRGSDIETIDIYDTKPLLQGEILGEKKFDASMNKLERPSPRRGPSLHAERMSPMISTGTMAQGRGSPFG*