AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG009464


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG009464 MtrunA17_Chr3g0088371 80.526 190 34 1 631 817 1 190 7.90e-100 310
MsaG009464 MtrunA17_Chr2g0324011 29.781 638 373 13 47 678 3 571 3.05e-92 305
MsaG009464 MtrunA17_Chr3g0082121 30.159 693 389 17 57 740 49 655 7.79e-91 304
MsaG009464 MtrunA17_Chr1g0202341 28.549 634 371 17 50 675 50 609 4.43e-73 255
MsaG009464 MtrunA17_Chr8g0363841 28.230 627 378 14 56 678 22 580 9.30e-70 245
MsaG009464 MtrunA17_Chr1g0203721 25.097 777 474 18 12 756 5 705 9.42e-70 249
MsaG009464 MtrunA17_Chr2g0296781 27.179 677 408 19 55 721 1 602 2.30e-68 243
MsaG009464 MtrunA17_Chr5g0448761 25.562 712 454 16 50 754 59 701 3.27e-68 243
MsaG009464 MtrunA17_Chr6g0477261 27.553 519 326 11 196 710 7 479 1.65e-61 221
MsaG009464 MtrunA17_Chr6g0458391 27.302 630 352 17 57 675 231 765 2.66e-61 223
MsaG009464 MtrunA17_Chr5g0441581 25.997 677 396 22 39 702 25 609 6.96e-59 214
MsaG009464 MtrunA17_Chr2g0287651 25.035 723 452 19 21 732 45 688 2.11e-58 216
MsaG009464 MtrunA17_Chr1g0164591 32.595 316 198 4 147 460 1 303 1.33e-56 198
MsaG009464 MtrunA17_Chr1g0172971 75.000 132 18 1 1 132 1 117 2.63e-55 201
MsaG009464 MtrunA17_Chr5g0440451 24.059 744 452 18 16 736 11 664 3.20e-55 207
MsaG009464 MtrunA17_Chr2g0329031 24.930 718 423 20 33 736 3 618 4.20e-54 201
MsaG009464 MtrunA17_Chr1g0207551 25.893 672 413 17 66 731 49 641 1.68e-53 201
MsaG009464 MtrunA17_Chr7g0258861 34.295 312 181 6 46 352 2 294 1.10e-51 184
MsaG009464 MtrunA17_Chr3g0118611 27.572 486 297 10 250 732 124 557 3.34e-51 193
MsaG009464 MtrunA17_Chr1g0196541 24.281 626 399 16 55 675 1 556 1.38e-49 188
MsaG009464 MtrunA17_Chr1g0198761 26.374 637 380 18 52 673 48 610 9.90e-49 186
MsaG009464 MtrunA17_Chr3g0080351 25.145 688 428 16 47 731 72 675 2.84e-48 185
MsaG009464 MtrunA17_Chr1g0203051 23.729 590 378 12 66 650 94 616 1.33e-46 177
MsaG009464 MtrunA17_Chr2g0287061 24.402 627 358 17 57 678 189 704 7.13e-45 174
MsaG009464 MtrunA17_Chr5g0448511 25.167 449 284 9 233 678 1 400 8.92e-43 164
MsaG009464 MtrunA17_Chr2g0290391 25.352 639 375 19 55 673 55 611 6.56e-42 164
MsaG009464 MtrunA17_Chr2g0276841 27.273 627 363 23 65 677 84 631 1.85e-41 163
MsaG009464 MtrunA17_Chr6g0475591 93.151 73 5 0 204 276 1 73 4.23e-41 145
MsaG009464 MtrunA17_Chr2g0291591 26.305 479 293 14 53 514 66 501 1.02e-38 152
MsaG009464 MtrunA17_Chr2g0291581 24.363 628 389 17 54 675 74 621 3.48e-38 152
MsaG009464 MtrunA17_Chr5g0431001 27.232 448 286 14 56 488 66 488 4.97e-37 146
MsaG009464 MtrunA17_Chr2g0294841 25.873 630 374 20 57 670 51 603 1.50e-34 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG009464 AT4G38180.1 26.582 632 395 15 50 678 72 637 2.83e-67 241
MsaG009464 AT4G15090.1 25.445 731 458 19 66 786 66 719 1.64e-55 207
MsaG009464 AT4G15090.5 25.445 731 458 19 66 786 66 719 1.64e-55 207
MsaG009464 AT4G15090.3 25.445 731 458 19 66 786 66 719 1.64e-55 207
MsaG009464 AT4G15090.2 25.445 731 458 19 66 786 66 719 1.64e-55 207
MsaG009464 AT4G15090.4 25.445 731 458 19 66 786 66 719 1.64e-55 207
MsaG009464 AT2G27110.3 25.589 594 382 15 229 816 36 575 9.97e-52 194
MsaG009464 AT2G27110.2 25.589 594 382 15 229 816 181 720 2.59e-51 195
MsaG009464 AT2G27110.1 25.589 594 382 15 229 816 181 720 2.59e-51 195
MsaG009464 AT3G06250.2 25.581 645 352 20 39 674 178 703 1.15e-50 192
MsaG009464 AT3G06250.1 25.581 645 352 20 39 674 178 703 1.15e-50 192
MsaG009464 AT3G06250.3 25.581 645 352 20 39 674 178 703 1.15e-50 192
MsaG009464 AT1G76320.3 23.979 759 457 23 66 806 12 668 4.94e-46 177
MsaG009464 AT1G76320.1 24.168 811 482 25 66 858 12 707 5.25e-46 177
MsaG009464 AT1G76320.4 24.168 811 482 25 66 858 12 707 5.25e-46 177
MsaG009464 AT1G76320.2 24.042 757 455 23 66 804 12 666 7.03e-46 177
MsaG009464 AT5G18960.2 24.575 647 363 19 37 674 197 727 1.47e-45 177
MsaG009464 AT5G18960.1 24.575 647 363 19 37 674 197 727 1.47e-45 177
MsaG009464 AT3G22170.2 23.676 680 426 18 48 721 67 659 1.80e-45 177
MsaG009464 AT3G22170.1 23.676 680 426 18 48 721 67 659 1.80e-45 177
MsaG009464 AT4G38170.1 24.440 491 303 16 251 732 24 455 1.50e-42 164
MsaG009464 AT1G10240.2 25.455 715 420 28 65 765 62 677 3.90e-40 159
MsaG009464 AT1G10240.1 25.455 715 420 28 65 765 62 677 3.90e-40 159
MsaG009464 AT4G19990.5 23.969 655 401 16 57 707 27 588 8.00e-40 159
MsaG009464 AT4G19990.3 23.969 655 401 16 57 707 27 588 8.27e-40 159
MsaG009464 AT4G19990.4 23.969 655 401 16 57 707 27 588 8.27e-40 159
MsaG009464 AT4G19990.6 23.969 655 401 16 57 707 27 588 8.75e-40 159
MsaG009464 AT4G19990.2 23.969 655 401 16 57 707 27 588 8.75e-40 159
MsaG009464 AT4G19990.7 23.969 655 401 16 57 707 41 602 1.44e-39 158
MsaG009464 AT4G19990.1 26.866 469 288 11 243 707 114 531 2.97e-39 156
MsaG009464 AT1G80010.1 24.724 635 388 19 57 675 101 661 5.15e-38 153
MsaG009464 AT5G28530.1 24.284 663 397 21 56 695 60 640 7.02e-38 152
MsaG009464 AT5G28530.3 24.133 663 394 22 56 695 60 636 4.72e-37 149
MsaG009464 AT5G28530.2 24.133 663 394 22 56 695 60 636 4.72e-37 149
MsaG009464 AT2G32250.5 22.996 761 437 24 24 768 13 640 1.82e-36 148
MsaG009464 AT2G32250.7 23.366 719 404 23 66 768 12 599 2.42e-36 148
MsaG009464 AT2G32250.2 22.996 761 437 24 24 768 13 640 2.62e-36 148
MsaG009464 AT2G32250.4 22.996 761 437 24 24 768 13 640 2.62e-36 148
MsaG009464 AT2G32250.8 23.366 719 404 23 66 768 12 599 2.99e-36 147
MsaG009464 AT2G32250.6 22.996 761 437 24 24 768 13 640 3.29e-36 148
MsaG009464 AT2G32250.1 22.996 761 437 24 24 768 13 640 3.29e-36 148
MsaG009464 AT2G32250.3 22.996 761 437 24 24 768 13 640 3.29e-36 148
MsaG009464 AT1G52520.1 23.114 623 400 16 57 675 91 638 4.48e-34 140

Find 161 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTCGCTTCTTTGACTTAAT+TGG 0.149305 2:-59474783 None:intergenic
TAAATTTCAGCTGCCTTTAT+TGG 0.156227 2:+59473376 MsaT009464.1:intron
AATCATCTGTGGTTTCTTAT+TGG 0.169948 2:-59473503 None:intergenic
CTTTAGTCATTTCAACATTA+TGG 0.194287 2:+59473921 MsaT009464.1:CDS
GCTGTTGGGGAAACATCTTC+TGG 0.218829 2:+59474720 MsaT009464.1:CDS
GTTGGCCATGTCGAGAAATT+TGG 0.236388 2:+59475366 MsaT009464.1:CDS
TTCTTTGACTTAATTGGATT+TGG 0.266522 2:-59474777 None:intergenic
TCTGTTGTTGGCCTGTTGTT+AGG 0.292589 2:-59472322 None:intergenic
CGATCATGATCTTCAAAACT+TGG 0.305304 2:-59474261 None:intergenic
GCTTTCCAATGTTGATGTTT+TGG 0.309346 2:+59474212 MsaT009464.1:CDS
TTACTTCTCGAAATGATCTA+AGG 0.311482 2:-59472513 None:intergenic
TTGAAGATCTTGGAATTCTT+AGG 0.311862 2:+59474381 MsaT009464.1:CDS
CTTGACGGTGTTCTTGAAGC+TGG 0.326551 2:+59474621 MsaT009464.1:CDS
GCATACGATTTGCGTAAGTT+TGG 0.338878 2:-59473780 None:intergenic
GCCGATATTTATTGTTTGTT+CGG 0.341758 2:-59472879 None:intergenic
CAACTAGATTATTCTCTATT+CGG 0.342438 2:+59472829 MsaT009464.1:CDS
CTCTGGAGGTCTTCGCCTTT+CGG 0.343389 2:-59475319 None:intergenic
TGTGCTCGTCAAATGGCCTT+GGG 0.347172 2:-59476371 None:intergenic
TTCGCCTTTCGGCTCGCCTT+TGG 0.352862 2:-59475308 None:intergenic
GCTTGTCATGCCAAATCTTT+CGG 0.354261 2:-59476440 None:intergenic
CAAAGTGGCCTGGAGCTCTC+TGG 0.355578 2:-59475336 None:intergenic
ATGATTGTCAAAACCAATAA+AGG 0.364908 2:-59473389 None:intergenic
CTGTTGGGGAAACATCTTCT+GGG 0.374156 2:+59474721 MsaT009464.1:CDS
TGTTCTTGAAGCTGGGAAAA+AGG 0.376732 2:+59474629 MsaT009464.1:CDS
TTTGCGCTCACCACCAGATC+TGG 0.380349 2:-59477542 None:intergenic
AACTTTGTGGCAAAGTGGCC+TGG 0.383452 2:-59475346 None:intergenic
AACAATAAATATCGGCCATT+AGG 0.388497 2:+59472886 MsaT009464.1:CDS
TCATGTTGAGTTGGACTTCA+AGG 0.388563 2:+59473963 MsaT009464.1:CDS
ACCGAACAAACAATAAATAT+CGG 0.389395 2:+59472878 MsaT009464.1:CDS
GAGAACGTCTTATGAAGTTA+TGG 0.394356 2:+59472588 MsaT009464.1:CDS
TTGTGCTCGTCAAATGGCCT+TGG 0.395383 2:-59476372 None:intergenic
TCTTCTCCACCCTGATCAAC+TGG 0.397017 2:-59477509 None:intergenic
TTTGGTCTTTCTTTGAACTT+TGG 0.398856 2:-59474759 None:intergenic
TTCCTTCAAATACTATTATG+AGG 0.399583 2:+59474095 MsaT009464.1:CDS
GAAGGCCTACCTCAGACTTT+AGG 0.402909 2:+59473749 MsaT009464.1:CDS
TCATCAACTGCATGATCAAC+TGG 0.414071 2:-59477485 None:intergenic
CTTCAAAAGTAGCTGCTGTT+GGG 0.414260 2:+59474706 MsaT009464.1:CDS
CATGTCGTATGTTTGAGAAC+AGG 0.415108 2:+59474337 MsaT009464.1:CDS
TCTCGACATGGCCAACTTTG+TGG 0.420318 2:-59475359 None:intergenic
TGCCCACCAGGACAGGTATC+AGG 0.424414 2:+59476407 MsaT009464.1:CDS
AGCTATGTAGCCGAAAGATT+TGG 0.426711 2:+59476430 MsaT009464.1:CDS
AAAACACCTGGAAAACTATT+CGG 0.428349 2:-59473562 None:intergenic
GAAGTTATGGGTCAAGGAGT+TGG 0.428685 2:+59472601 MsaT009464.1:CDS
CGAGAAGTAAATGAAGTTCA+AGG 0.430014 2:+59472526 MsaT009464.1:CDS
TAGAATTTGTGCTCGTCAAA+TGG 0.432542 2:-59476378 None:intergenic
GAGGAGTTGCTTCTTTCTAA+AGG 0.437852 2:+59474654 MsaT009464.1:CDS
TTCTTTGAACTTTGGTGCGG+TGG 0.447203 2:-59474751 None:intergenic
GAAAGGGTTGGTTGTAAAGC+TGG 0.447509 2:+59472391 MsaT009464.1:CDS
GAAGACCTCCAGAGAGCTCC+AGG 0.448599 2:+59475328 MsaT009464.1:CDS
TATGCATTGGTCTTCAGCTT+GGG 0.450920 2:+59473798 MsaT009464.1:CDS
ATGTGTATAAGATATATAGA+TGG 0.452819 2:+59472443 MsaT009464.1:CDS
GACAAGCAATTTCAAATCTC+AGG 0.452874 2:+59476456 MsaT009464.1:CDS
TTGAAGACTTAGATGGTGTC+GGG 0.455926 2:-59474689 None:intergenic
TCCATGATTCTTCATTGCTA+GGG 0.459212 2:-59472111 None:intergenic
CTTGCTTTGCATTTATTCAC+AGG 0.460007 2:+59474061 MsaT009464.1:CDS
GCTCTTATAAATTCTAAAGC+TGG 0.462891 2:+59472556 MsaT009464.1:CDS
GACCGCATCAGCTGACTGTT+GGG 0.463150 2:-59474015 None:intergenic
AGAACGTCTTATGAAGTTAT+GGG 0.466325 2:+59472589 MsaT009464.1:CDS
TTCCATGATTCTTCATTGCT+AGG 0.469455 2:-59472112 None:intergenic
AGTTGATGATCCAGTTGATC+AGG 0.470630 2:+59477499 MsaT009464.1:CDS
GTTTACTTAATCCTAACAAC+AGG 0.470860 2:+59472311 MsaT009464.1:CDS
GGCAGAAATTGCTTATCAAT+CGG 0.471938 2:+59474835 MsaT009464.1:CDS
CCATGTCGAGAAATTTGGCC+TGG 0.473378 2:+59475371 MsaT009464.1:CDS
ATCATGATCGATTTGATGAA+AGG 0.476999 2:+59474274 MsaT009464.1:CDS
GTATGCATTGGTCTTCAGCT+TGG 0.479582 2:+59473797 MsaT009464.1:CDS
TTTAAGTCTGAAAACCGAAA+AGG 0.483010 2:-59472640 None:intergenic
TTGACGGTGTTCTTGAAGCT+GGG 0.483876 2:+59474622 MsaT009464.1:CDS
ACCAGTGGACTGTCTGTTGT+TGG 0.486062 2:-59472334 None:intergenic
CTTTCTAAAGGTATTCGTAC+AGG 0.486879 2:+59474666 MsaT009464.1:CDS
GATCATGATCTTCAAAACTT+GGG 0.487945 2:-59474260 None:intergenic
CCAGGCCAAATTTCTCGACA+TGG 0.488512 2:-59475371 None:intergenic
CCCCTAGCAATGAAGAATCA+TGG 0.491418 2:+59472110 MsaT009464.1:CDS
ATCTTCAGTGCCAACATTGA+AGG 0.493279 2:-59474505 None:intergenic
ACATTATGGTTCAGAGAATG+AGG 0.494022 2:+59473935 MsaT009464.1:CDS
ATTCTATAGTGTTGCCCACC+AGG 0.495712 2:+59476395 MsaT009464.1:CDS
AGCTGGAATATGTTTGAAGC+TGG 0.498637 2:+59472408 MsaT009464.1:CDS
CACACTTGCTCTTCATAACT+CGG 0.499122 2:-59477581 None:intergenic
TCTTTGAACTTTGGTGCGGT+GGG 0.503874 2:-59474750 None:intergenic
TTACAACCAACCCTTTCCTC+AGG 0.505082 2:-59472385 None:intergenic
TCTTCAAAAGTAGCTGCTGT+TGG 0.507825 2:+59474705 MsaT009464.1:CDS
GAAGGCATCAACTTCTGCTA+AGG 0.509170 2:+59476317 MsaT009464.1:CDS
CGTTATGTTTGTAGCAAACA+AGG 0.510449 2:+59472274 MsaT009464.1:CDS
AGGCCACTTTGCCACAAAGT+TGG 0.510497 2:+59475348 MsaT009464.1:CDS
ACAAAACAAGAAAACTGATA+AGG 0.511435 2:+59472240 MsaT009464.1:CDS
GATCTTCAAAACTTGGGGAA+AGG 0.512098 2:-59474254 None:intergenic
CAACTTCTGCTAAGGGAAAG+AGG 0.513872 2:+59476325 MsaT009464.1:CDS
AGATTTAGATAATCCAGATC+TGG 0.516655 2:+59477529 MsaT009464.1:CDS
CTAAGGTAACACGAATGCTC+TGG 0.517941 2:-59472496 None:intergenic
CAAAACACTGGCGAGATGAA+AGG 0.518501 2:+59475394 MsaT009464.1:CDS
CTCCTCATAATAGTATTTGA+AGG 0.518505 2:-59474097 None:intergenic
TAAAGAATCGAACAAGTGAA+TGG 0.519618 2:-59473903 None:intergenic
GGTAATTATGCATATAACAC+TGG 0.523547 2:+59472178 MsaT009464.1:CDS
ATAGTGTTGCCCACCAGGAC+AGG 0.525105 2:+59476400 MsaT009464.1:CDS
GACAATTTGTCGAAAAGAGA+TGG 0.527103 2:+59472675 MsaT009464.1:CDS
TAAGATATATAGATGGGATG+TGG 0.528498 2:+59472450 MsaT009464.1:CDS
CATAATAGTATTTGAAGGAA+AGG 0.529686 2:-59474092 None:intergenic
AGCTCGCCATGGCGATCCAA+AGG 0.530428 2:+59475292 MsaT009464.1:CDS
GGCTCGCCTTTGGATCGCCA+TGG 0.532629 2:-59475298 None:intergenic
TTTGAAGACTTAGATGGTGT+CGG 0.532725 2:-59474690 None:intergenic
GAGGGATAATCATGTTGAGT+TGG 0.532757 2:+59473954 MsaT009464.1:CDS
TGGGCTTTGTTCATGGCACA+TGG 0.532868 2:+59473588 MsaT009464.1:CDS
GAATGCTCTGGTTTATGTAA+TGG 0.534744 2:-59472484 None:intergenic
TGCATCCAAAACATCAACAT+TGG 0.544202 2:-59474217 None:intergenic
GAGAGTGGACATCTTAGTGT+TGG 0.544996 2:+59472001 MsaT009464.1:CDS
ATAGCTCCTGATACCTGTCC+TGG 0.545172 2:-59476413 None:intergenic
AGCAAACAAGGTTTCAAGAA+GGG 0.545537 2:+59472286 MsaT009464.1:CDS
CGCTTTAAAACATATTGTCT+AGG 0.545689 2:-59474438 None:intergenic
TAGCAAACAAGGTTTCAAGA+AGG 0.545725 2:+59472285 MsaT009464.1:CDS
GGTACCTAAGAATCAAAAGA+AGG 0.550821 2:+59476299 MsaT009464.1:CDS
AACACAATAACGCACTAGCC+TGG 0.552106 2:-59473534 None:intergenic
CTGAATTCGACCTTCAATGT+TGG 0.553946 2:+59474495 MsaT009464.1:CDS
GCTCCTGATACCTGTCCTGG+TGG 0.558556 2:-59476410 None:intergenic
ATGTCGTATGTTTGAGAACA+GGG 0.560861 2:+59474338 MsaT009464.1:CDS
GGCCTACCTCAGACTTTAGG+TGG 0.565384 2:+59473752 MsaT009464.1:CDS
CCATGATTCTTCATTGCTAG+GGG 0.566277 2:-59472110 None:intergenic
GGACCGCATCAGCTGACTGT+TGG 0.570066 2:-59474016 None:intergenic
TGAATAAATGCAAAGCAAGA+AGG 0.570463 2:-59474057 None:intergenic
AATTTGGCCTGGCAAAACAC+TGG 0.573408 2:+59475382 MsaT009464.1:CDS
AGTGGCCTGGAGCTCTCTGG+AGG 0.575379 2:-59475333 None:intergenic
TTCAAAAGTAGCTGCTGTTG+GGG 0.577029 2:+59474707 MsaT009464.1:CDS
AAGGCATCAACTTCTGCTAA+GGG 0.577540 2:+59476318 MsaT009464.1:CDS
ATCATGATCTTCAAAACTTG+GGG 0.577988 2:-59474259 None:intergenic
GTTATGGGTCAAGGAGTTGG+AGG 0.578191 2:+59472604 MsaT009464.1:CDS
TCTTATGAAGTTATGGGTCA+AGG 0.580120 2:+59472595 MsaT009464.1:CDS
AAGATCTTGGAATTCTTAGG+TGG 0.585277 2:+59474384 MsaT009464.1:CDS
CGATCCAAAGGCGAGCCGAA+AGG 0.589700 2:+59475304 MsaT009464.1:CDS
GTGCTCGTCAAATGGCCTTG+GGG 0.591937 2:-59476370 None:intergenic
TGTCGAAAAGAGATGGTGGT+TGG 0.594352 2:+59472682 MsaT009464.1:CDS
ATCCCAACAGTCAGCTGATG+CGG 0.597403 2:+59474013 MsaT009464.1:CDS
TATGATGATGCTGATAATGA+CGG 0.597505 2:+59474189 MsaT009464.1:CDS
CTTACGCAAATCGTATGCAT+TGG 0.597846 2:+59473785 MsaT009464.1:CDS
TGTGTATAAGATATATAGAT+GGG 0.601002 2:+59472444 MsaT009464.1:CDS
TTGATATCGTTGTGCTTGAG+TGG 0.602169 2:-59474529 None:intergenic
TCACTGATTCATGCTGAGAG+TGG 0.606950 2:+59472031 MsaT009464.1:CDS
CTTCAAATACTATTATGAGG+AGG 0.607664 2:+59474098 MsaT009464.1:CDS
GCCAACAACAGACAGTCCAC+TGG 0.611268 2:+59472333 MsaT009464.1:CDS
ATATCAACTTCATCTGAGAG+TGG 0.614980 2:+59471986 MsaT009464.1:CDS
CTGAAGCTGTTGAAGCCCCA+AGG 0.619118 2:+59476355 MsaT009464.1:CDS
ATGATGATGCTGATAATGAC+GGG 0.620534 2:+59474190 MsaT009464.1:CDS
GTGAGCGCAAATTCAAGCGA+AGG 0.621778 2:+59477554 MsaT009464.1:CDS
TGTTGGGGAAACATCTTCTG+GGG 0.626723 2:+59474722 MsaT009464.1:CDS
CTCCTGATACCTGTCCTGGT+GGG 0.627515 2:-59476409 None:intergenic
TTTAGATAATCCAGATCTGG+TGG 0.628502 2:+59477532 MsaT009464.1:CDS
TGGCCAACTTTGTGGCAAAG+TGG 0.628760 2:-59475351 None:intergenic
GGACTAAGGCAAGCTCGCCA+TGG 0.633564 2:+59475281 MsaT009464.1:intron
GGGTCAAGGAGTTGGAGGCA+CGG 0.637387 2:+59472609 MsaT009464.1:CDS
GTTGATGATCCAGTTGATCA+GGG 0.638374 2:+59477500 MsaT009464.1:CDS
CATTATGGTTCAGAGAATGA+GGG 0.643278 2:+59473936 MsaT009464.1:CDS
CAGCTTCAAGAACACCGTCA+AGG 0.645429 2:-59474620 None:intergenic
TTCACAAACTCACTAACCAG+TGG 0.650808 2:-59472349 None:intergenic
GACAAGCCACCTAAAGTCTG+AGG 0.653221 2:-59473758 None:intergenic
TGTCGTATGTTTGAGAACAG+GGG 0.653807 2:+59474339 MsaT009464.1:CDS
TGGTCTGTATAAATCATCTG+TGG 0.656705 2:-59473514 None:intergenic
GAATTCAGCTTATCGACAGA+CGG 0.659072 2:-59474480 None:intergenic
ACAGATGATTTATACAGACC+AGG 0.659088 2:+59473516 MsaT009464.1:CDS
TCTTTCTTTGAACTTTGGTG+CGG 0.659854 2:-59474754 None:intergenic
TGGCGAGATGAAAGGCGAAG+AGG 0.665481 2:+59475402 MsaT009464.1:CDS
AGCCACCTAAAGTCTGAGGT+AGG 0.684957 2:-59473754 None:intergenic
AGGTGTGTACTTGTTTACAA+CGG 0.690351 2:-59474037 None:intergenic
AATTTGTCGAAAAGAGATGG+TGG 0.715668 2:+59472678 MsaT009464.1:CDS
GATGATCCAGTTGATCAGGG+TGG 0.762875 2:+59477503 MsaT009464.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 59471977 59477604 59471977 ID=MsaG009464
Chr2 mRNA 59471977 59477604 59471977 ID=MsaT009464.1;Parent=MsaG009464
Chr2 exon 59471977 59472907 59471977 ID=MsaT009464.1.exon1;Parent=MsaT009464.1
Chr2 CDS 59471977 59472907 59471977 ID=cds.MsaT009464.1;Parent=MsaT009464.1
Chr2 exon 59473386 59474899 59473386 ID=MsaT009464.1.exon2;Parent=MsaT009464.1
Chr2 CDS 59473386 59474899 59473386 ID=cds.MsaT009464.1;Parent=MsaT009464.1
Chr2 exon 59475289 59475423 59475289 ID=MsaT009464.1.exon3;Parent=MsaT009464.1
Chr2 CDS 59475289 59475423 59475289 ID=cds.MsaT009464.1;Parent=MsaT009464.1
Chr2 exon 59476295 59476477 59476295 ID=MsaT009464.1.exon4;Parent=MsaT009464.1
Chr2 CDS 59476295 59476477 59476295 ID=cds.MsaT009464.1;Parent=MsaT009464.1
Chr2 exon 59477476 59477604 59477476 ID=MsaT009464.1.exon5;Parent=MsaT009464.1
Chr2 CDS 59477476 59477604 59477476 ID=cds.MsaT009464.1;Parent=MsaT009464.1
Gene Sequence

>MsaT009464.1

ATGGATTTGATATCAACTTCATCTGAGAGTGGACATCTTAGTGTTGGAAATTCATCACTGATTCATGCTGAGAGTGGACAACTGAGTATTGAAACTTCTTCAGTGATTCATGCTGATAGTTCTCAATGTTACTCCCCTAGCAATGAAGAATCATGGAAGTCTTTAGTCTTTCATTCTATTAAAGAGATTGAAGATTTTTATGGTAATTATGCATATAACACTGGATTTTCTATTAGGACTATGTTGAAGTCGAAGAATAATTCACAAAACAAGAAAACTGATAAGGTACATTATGTGCGTTATGTTTGTAGCAAACAAGGTTTCAAGAAGGGAAGTTTACTTAATCCTAACAACAGGCCAACAACAGACAGTCCACTGGTTAGTGAGTTTGTGAAAGTGAAAGAAAAACCTGAGGAAAGGGTTGGTTGTAAAGCTGGAATATGTTTGAAGCTGGATGAAGTTTTGAATGTGTATAAGATATATAGATGGGATGTGGATCATTGTCATCCATTACATAAACCAGAGCATTCGTGTTACCTTAGATCATTTCGAGAAGTAAATGAAGTTCAAGGACAACTAGCTCTTATAAATTCTAAAGCTGGAATGTCGATGAGAACGTCTTATGAAGTTATGGGTCAAGGAGTTGGAGGCACGGAGAATCTTCCTTTTCGGTTTTCAGACTTAAAGAACTATCTAATGACAATTTGTCGAAAAGAGATGGTGGTTGGTGAAGCAACTGTAATTCAAGAATTCTTTAGAAATGAAGCCCTCTCGAAACCATCTTTTTACTATGATATTCAAGTTGATGCTGCAGAAGACATAGCTAGTATTTTTTGGTCAGATGGAATTATACAACTAGATTATTCTCTATTCGGCGATGTCATCAGTTTTGATACAACTTACCGAACAAACAATAAATATCGGCCATTAGCTGCCTTTATTGGTTTTGACAATCATCGTAAGAGTGTTTTGTTTGGTGCTGCGCTATTGTACGATGAGACAACATCTACTTTTGATTGGTTGTTTAAAACATTCTTGAAGTGTATGTCCAATAAGAAACCACAGATGATTTATACAGACCAGGCTAGTGCGTTATTGTGTTCAATTCCGAATAGTTTTCCAGGTGTTTTTCATGGGCTTTGTTCATGGCACATGGCAGAGAATGCAAAGAAAAATCTTGGCTCTCGTGCAAACAGTGCATTTTTTGATGAGTTAAATAATTTGGTTTCAAATGTAGATGATGAATCAGATTTTGACTATAATTGGGATCAGATGATGATAAATTGTTTTGATGGAAGGCCTACCTCAGACTTTAGGTGGCTTGTCCAAACTTACGCAAATCGTATGCATTGGTCTTCAGCTTGGGTCAAGTCACATTTCTTCTTTGATGCAGCGACTCAGTTAAGTGAGTCTTTCAATGCTTTTCTTCGTGGATTTCTGCAGTCAGACCATTCACTTGTTCGATTCTTTAGTCATTTCAACATTATGGTTCAGAGAATGAGGGATAATCATGTTGAGTTGGACTTCAAGGCTGCAAACACTAGAACAAAAAATAATTATCCCAACAGTCAGCTGATGCGGTCCGTTGTAAACAAGTACACACCTTCTTGCTTTGCATTTATTCACAGGCAGTATGACCTTTCCTTCAAATACTATTATGAGGAGGACCTGACAAAAGTGCACGCCTTTGAGAAGTTTTTCAAAGTTTTCACAATTGATAAGGTTGATGATAATTATGATGATGCTGATAATGACGGGCTTTCCAATGTTGATGTTTTGGATGCAGAACTTCAAGAAAACCTTTCCCCAAGTTTTGAAGATCATGATCGATTTGATGAAAGGCTTGTCACAGTTGACATTAGAAGTAAAAGTTTTAGTTGTTCATGTCGTATGTTTGAGAACAGGGGCTTCTTATGTCGACATGTTTTGAAGATCTTGGAATTCTTAGGTGGACATGTGCAATATCATTCTTTGAAGACAATACCTAGACAATATGTTTTAAAGCGTTGGACTAGAGATGTGCGTCCGTCTGTCGATAAGCTGAATTCGACCTTCAATGTTGGCACTGAAGATACCACTCAAGCACAACGATATCAACAAATTTGTGCTGTTACACTTCAGCTTTCTACACATTTTTGTGCAGATCCAGAGTCATCTAAAATTTTCCTTGACGGTGTTCTTGAAGCTGGGAAAAAGGCAGAGGAGTTGCTTCTTTCTAAAGGTATTCGTACAGGCCCGACACCATCTAAGTCTTCAAAAGTAGCTGCTGTTGGGGAAACATCTTCTGGGGTGAAGCCCACCGCACCAAAGTTCAAAGAAAGACCAAATCCAATTAAGTCAAAGAAGCGACTTAAAAGTGATTATGAAAAAGCTAGAGAAAGGCAGAAATTGCTTATCAATCGGAAGAAAAAAAAGAGAGATGATGAAGCCTTAAACCAAAAAGTGGCAAGCTCGCCATGGCGATCCAAAGGCGAGCCGAAAGGCGAAGACCTCCAGAGAGCTCCAGGCCACTTTGCCACAAAGTTGGCCATGTCGAGAAATTTGGCCTGGCAAAACACTGGCGAGATGAAAGGCGAAGAGGCATGGTACCTAAGAATCAAAAGAAGGCATCAACTTCTGCTAAGGGAAAGAGGAAACAATCTGAAGCTGTTGAAGCCCCAAGGCCATTTGACGAGCACAAATTCTATAGTGTTGCCCACCAGGACAGGTATCAGGAGCTATGTAGCCGAAAGATTTGGCATGACAAGCAATTTCAAATCTCAGGTTAATGAGCCAGTTGATCATGCAGTTGATGATCCAGTTGATCAGGGTGGAGAAGATTTAGATAATCCAGATCTGGTGGTGAGCGCAAATTCAAGCGAAGGCACTCCGAGTTATGAAGAGCAAGTGTGA

Protein sequence

>MsaT009464.1

MDLISTSSESGHLSVGNSSLIHAESGQLSIETSSVIHADSSQCYSPSNEESWKSLVFHSIKEIEDFYGNYAYNTGFSIRTMLKSKNNSQNKKTDKVHYVRYVCSKQGFKKGSLLNPNNRPTTDSPLVSEFVKVKEKPEERVGCKAGICLKLDEVLNVYKIYRWDVDHCHPLHKPEHSCYLRSFREVNEVQGQLALINSKAGMSMRTSYEVMGQGVGGTENLPFRFSDLKNYLMTICRKEMVVGEATVIQEFFRNEALSKPSFYYDIQVDAAEDIASIFWSDGIIQLDYSLFGDVISFDTTYRTNNKYRPLAAFIGFDNHRKSVLFGAALLYDETTSTFDWLFKTFLKCMSNKKPQMIYTDQASALLCSIPNSFPGVFHGLCSWHMAENAKKNLGSRANSAFFDELNNLVSNVDDESDFDYNWDQMMINCFDGRPTSDFRWLVQTYANRMHWSSAWVKSHFFFDAATQLSESFNAFLRGFLQSDHSLVRFFSHFNIMVQRMRDNHVELDFKAANTRTKNNYPNSQLMRSVVNKYTPSCFAFIHRQYDLSFKYYYEEDLTKVHAFEKFFKVFTIDKVDDNYDDADNDGLSNVDVLDAELQENLSPSFEDHDRFDERLVTVDIRSKSFSCSCRMFENRGFLCRHVLKILEFLGGHVQYHSLKTIPRQYVLKRWTRDVRPSVDKLNSTFNVGTEDTTQAQRYQQICAVTLQLSTHFCADPESSKIFLDGVLEAGKKAEELLLSKGIRTGPTPSKSSKVAAVGETSSGVKPTAPKFKERPNPIKSKKRLKSDYEKARERQKLLINRKKKKRDDEALNQKVASSPWRSKGEPKGEDLQRAPGHFATKLAMSRNLAWQNTGEMKGEEAWYLRIKRRHQLLLRERGNNLKLLKPQGHLTSTNSIVLPTRTGIRSYVAERFGMTSNFKSQVNEPVDHAVDDPVDQGGEDLDNPDLVVSANSSEGTPSYEEQV*