AlfalfaGEDB | MsaG009566

M. sativa ssp. caerulea / MsaG009566

KEGG: -
GO: GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009566	XP_013464542.2	91.691	1011	58	3	1	986	1	1010	0.0	1873

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009566	sp\|C0LGN2\|Y3148_ARATH	53.846	1040	404	22	1	985	1	1019	0.0	1042

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009566	tr\|A0A396JC43\|A0A396JC43_MEDTR	91.691	1011	58	3	1	986	1	1010	0.0	1873

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000015	MsaG009566	0.801367	1.560275e-48	2.175709e-46
MsaG000083	MsaG009566	0.833753	8.079302e-56	2.607528e-53
MsaG000113	MsaG009566	0.824665	1.264930e-53	3.152894e-51
MsaG000151	MsaG009566	0.831737	2.544082e-55	7.741541e-53
MsaG000153	MsaG009566	0.847666	1.891139e-59	9.469986e-57
MsaG000213	MsaG009566	0.803556	5.547677e-49	8.133869e-47
MsaG000218	MsaG009566	0.865585	1.062397e-64	1.027353e-61
MsaG000235	MsaG009566	0.829487	8.989374e-55	2.563696e-52
MsaG000247	MsaG009566	0.837427	9.596500e-57	3.458472e-54
MsaG000250	MsaG009566	0.817366	5.956008e-52	1.223019e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG009566	MtrunA17_Chr2g0314911	91.691	1011	58	3	1	986	1	1010	1873
MsaG009566	MtrunA17_Chr2g0314991	81.149	992	147	6	21	986	538	1515	1594
MsaG009566	MtrunA17_Chr2g0314991	86.980	553	70	2	426	978	1	551	980
MsaG009566	MtrunA17_Chr2g0315081	80.020	1006	163	7	1	980	1	994	1593
MsaG009566	MtrunA17_Chr2g0314901	66.864	1011	290	14	12	986	16	1017	1307
MsaG009566	MtrunA17_Chr5g0438071	67.202	997	272	13	22	986	23	996	1299
MsaG009566	MtrunA17_Chr2g0314841	58.611	1022	366	17	1	981	5	1010	1142
MsaG009566	MtrunA17_Chr2g0314821	57.771	1023	376	17	1	981	5	1013	1128
MsaG009566	MtrunA17_Chr8g0359641	57.200	1000	370	16	25	986	25	1004	1077
MsaG009566	MtrunA17_Chr8g0359651	57.846	975	362	16	17	953	19	982	1069

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG009566	AT3G14840.2	53.846	1040	404	22	1	985	1	1019	1042
MsaG009566	AT1G07650.1	52.174	1012	423	18	7	971	8	1005	955
MsaG009566	AT1G07650.2	51.866	1018	423	19	7	971	8	1011	948
MsaG009566	AT1G53420.1	52.528	969	372	18	25	953	24	944	944
MsaG009566	AT1G53430.1	50.492	1016	421	21	12	968	13	1005	918
MsaG009566	AT1G07650.3	50.692	1012	412	18	7	971	8	979	917
MsaG009566	AT1G53440.1	50.936	1015	430	25	7	968	3	1002	910
MsaG009566	AT1G53430.2	51.235	972	398	20	42	968	24	964	896
MsaG009566	AT1G29750.2	47.059	986	461	17	8	948	22	991	847
MsaG009566	AT1G29750.1	47.862	959	439	17	35	948	34	976	842

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Find 224 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAAATCAGATATCTT+TGG	0.290505	2:+61404779	None:intergenic
AAAGCAGATGTTTATAGTTT+TGG	0.214365	2:-61404501	MsaT009566.1:CDS
AAATAATGCTAGACTTACTA+TGG	0.376104	2:-61406699	MsaT009566.1:CDS
AAATAGTTTAGACGTACAGA+CGG	0.623422	2:-61405492	MsaT009566.1:CDS
AAATTCCATGTCAGTCCAAC+AGG	0.408680	2:-61406791	MsaT009566.1:CDS
AAATTGAAGGTATTGCAACC+TGG	0.616203	2:+61410158	None:intergenic
AACACCAAATAAAATTAGAT+TGG	0.470991	2:-61404928	MsaT009566.1:CDS
AACCAAAATCAGATATCTTT+GGG	0.373149	2:+61404780	None:intergenic
AACCGGTTACTCGATTGCTG+GGG	0.676581	2:+61409807	None:intergenic
AAGACTGAAGGTTGTTCACA+GGG	0.649361	2:-61404843	MsaT009566.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	61403880	61411124	61403880	ID=MsaG009566
Chr2	mRNA	61403880	61411124	61403880	ID=MsaT009566.1;Parent=MsaG009566
Chr2	exon	61403880	61404278	61403880	ID=MsaT009566.1.exon23;Parent=MsaT009566.1
Chr2	CDS	61403880	61404278	61403880	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61404419	61404569	61404419	ID=MsaT009566.1.exon22;Parent=MsaT009566.1
Chr2	CDS	61404419	61404569	61404419	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61404722	61404959	61404722	ID=MsaT009566.1.exon21;Parent=MsaT009566.1
Chr2	CDS	61404722	61404959	61404722	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61405076	61405286	61405076	ID=MsaT009566.1.exon20;Parent=MsaT009566.1
Chr2	CDS	61405076	61405286	61405076	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61405400	61405518	61405400	ID=MsaT009566.1.exon19;Parent=MsaT009566.1
Chr2	CDS	61405400	61405518	61405400	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61405805	61405939	61405805	ID=MsaT009566.1.exon18;Parent=MsaT009566.1
Chr2	CDS	61405805	61405939	61405805	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61406026	61406224	61406026	ID=MsaT009566.1.exon17;Parent=MsaT009566.1
Chr2	CDS	61406026	61406224	61406026	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61406526	61406905	61406526	ID=MsaT009566.1.exon16;Parent=MsaT009566.1
Chr2	CDS	61406526	61406905	61406526	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61407395	61407429	61407395	ID=MsaT009566.1.exon15;Parent=MsaT009566.1
Chr2	CDS	61407395	61407429	61407395	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61407545	61407580	61407545	ID=MsaT009566.1.exon14;Parent=MsaT009566.1
Chr2	CDS	61407545	61407580	61407545	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61407664	61407726	61407664	ID=MsaT009566.1.exon13;Parent=MsaT009566.1
Chr2	CDS	61407664	61407726	61407664	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61407961	61408020	61407961	ID=MsaT009566.1.exon12;Parent=MsaT009566.1
Chr2	CDS	61407961	61408020	61407961	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61408602	61408673	61408602	ID=MsaT009566.1.exon11;Parent=MsaT009566.1
Chr2	CDS	61408602	61408673	61408602	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61408772	61408843	61408772	ID=MsaT009566.1.exon10;Parent=MsaT009566.1
Chr2	CDS	61408772	61408843	61408772	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61408940	61409014	61408940	ID=MsaT009566.1.exon9;Parent=MsaT009566.1
Chr2	CDS	61408940	61409014	61408940	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61409107	61409178	61409107	ID=MsaT009566.1.exon8;Parent=MsaT009566.1
Chr2	CDS	61409107	61409178	61409107	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61409288	61409359	61409288	ID=MsaT009566.1.exon7;Parent=MsaT009566.1
Chr2	CDS	61409288	61409359	61409288	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61409436	61409507	61409436	ID=MsaT009566.1.exon6;Parent=MsaT009566.1
Chr2	CDS	61409436	61409507	61409436	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61409764	61409835	61409764	ID=MsaT009566.1.exon5;Parent=MsaT009566.1
Chr2	CDS	61409764	61409835	61409764	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61409972	61410043	61409972	ID=MsaT009566.1.exon4;Parent=MsaT009566.1
Chr2	CDS	61409972	61410043	61409972	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61410156	61410227	61410156	ID=MsaT009566.1.exon3;Parent=MsaT009566.1
Chr2	CDS	61410156	61410227	61410156	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61410627	61410813	61410627	ID=MsaT009566.1.exon2;Parent=MsaT009566.1
Chr2	CDS	61410627	61410813	61410627	ID=cds.MsaT009566.1;Parent=MsaT009566.1
Chr2	exon	61411028	61411124	61411028	ID=MsaT009566.1.exon1;Parent=MsaT009566.1
Chr2	CDS	61411028	61411124	61411028	ID=cds.MsaT009566.1;Parent=MsaT009566.1

Gene Sequence

>MsaT009566.1

ATGGCTACTTCCTCCCAATTTTTCTTTCTTTCACTCATTCTCATTTGGTTCATACCTCTAACAGCTTTTGGAGCTACTACTATTCATCCCGACGAAAAGAAAGCTCTTGAAGATATAGCTGAATCACTTGGTAAGAATGATTGGAACTTCAACGTAGATCCATGCAGCAACAAACCTAACTGGGCTACACCTACGCCTCCGGGTCACAGATTGCAACTCGTAGTGAACAATGTCACATGCAACTGCAGTGTTGCTGGTGACAACTTCTGCCATGTTGTTTCTATAACTTTGAAAGGGCAAAATCTCCCCGGTGTTCTCCCACCAGAACTGACCAGGTTGCAATACCTTCAATTTATTGACCTCTCTCGCAATTACTTGAACGGTACAATTCCAAAAGAATGGGGCTCCATGACGAATATTCGTAACATTAGTCTCCCCAGCAATCGAGTAACCGGTTCAATACCAGTGGAGATTGCAAATATATCTACTCTGATACAGTTGAAACTTTCCTCTAACAATTTTACCGGAGAACTACCTGCGACATTGGCAAAGCTCACTACATTGCAAGATTTCCGAATTGAGGACAACCAATTCTCTGGAAAAATACCTGATTTTATTCAGAATTGGACAAATATCAATACATTAATCATTCAAGGAAGTGGATTAAGCGGACCAATTCCTTCTCAAATTTCACGTTTGAGTAACTTAACTGACTTGCGAATTAGTGATTTGAATGGATTAGAATATGCACCTTTGCCACAACTTGATAATATGCATTCGTTAAAAAATCTGATTTTGAGGAACTGCAACATCAACGGGGAATTACATGATTATCTTGCGACTATAACAACATTAAAACACTTAGACCTCAGCTTTAACAACTTAAGTGGAACGATTCCGAGTACCTATGCTGAAGTGAGCGGTGCTAAATTCATATTTTTAACTGGGAACCTTCTCACCGGACTGGTGCCAGCTTGGAAAAAGAACATCGACGTAGATATTTCATACAATAACTTAAGCAACAGCCAAGGGAGTCAGATATGTCAAAGTGATAAACTGAACTTGTTTTCTCCCTCATTGGCACACAATGACATAGGAACAGTTTCGTGTTTGAGCGGTTGCCCCAAACCCTTGTACTCCCTTTATATAAATTGTGGTGGAAAGCAAGCAATAGTCAACAAAAAAAGTTATGATGATGATTCCGATTCATCTGGAGCAGCTAAATTCCATGTCAGTCCAACAGGAAATTGGGCATTTAGTACAACTGGTATGTTCATTGATGGTGATCAACTCGGAGAAACTTATTCCCCACCAAATAATGCTAGACTTACTATGGCGGACACTGAATTGTACATGGATGCACGTGTTTCTCCTATTTCGTTGACTTATTATGCGTTTTGTCTGGTAAATGGAAGCTACACAGTAAATCTACATTTTGCTGAAATAATGATCACCGATGATCAAACTTATGGTAGTCTTGGAAGACGTCTATTTGATATCTACCTTCAGGGAAAGCCGGTGCAAAAGGATTTCAATATTGCAGAAGAAGCAGGAGGAGTTGGTAAGAAAGTTGTAAAACCATTTAAAGATGTCGTCGTTACTAGTAATACCTTGGAGATCCAATTGTATTGGGCTGGAAAAGGGACACAGTCTCTCCCAAATAGATCAGTATATGGTCCTCTTATATCAGCTATATCTGTGGAATCTGCAGACTCCCCACCTGGAAGCATAACTGCAGGAGCTGTAGCTGGAATTGTGGTTGCAGCAACAACTGTTGTCATTATAGTATTTGGTATACTATGGTGGAAAGGATGTTTTGGAAAGAAAAACTCATTAGCAAGAGAGCTAAATAGTTTAGACGTACAGACGGGTATATTTACCTTACGACAAATCAAAGCAGCGACAAATAACTTTGATATTTCCAATAAGATTGGAGAAGGAGGATTCGGTCCTGTGTACAAGGGATGTTTACCCAATGGGACATTGATAGCAGTGAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTTTTAAACGAGATAGGCATGATTTCTGCTTTGCAACATCCTTATCTTGTTAAACTCCATGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTAATATATGAATACTTGGAAAACAATAGTCTTGCTCGTGCTTTATTTGGTCCAGAGGAACACCAAATAAAATTAGATTGGTCAACAAGGAAGAAGATCTGTGTTGGTATTGCTAGAGGTTTGGCATACCTCCACGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCTACCAATGTGTTGCTTGATGCGAATCTCGACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGACGAGGAGGACAATACTCACATTAGCACTAGAATTGCTGGGACATATGGATATATGGCGCCTGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATCGTTAGTGGAAAGAGCAACACCATGTATCGATCAAAGGAGGAAGCATTCTATCTTCTTGATTGGGCACATTTGTTGAAAGAGAGAGGCGACCTAATGGAGCTAGTAGATAGAAGATTAGGTTTAGATTTCAACAAAAAGGAAGCTATGGTGATGATCAACGTAGCTCTCCTATGCACCAACGTCACTTCAAACCTTAGGCCCTCCATGTCGTCCGTTGTAAGTATGCTTGAAGGAAATACCGTGGTTCCAGAATTTGTTTCAGATTCAAGTGAAGTAATGGATGAGAAAAAGTTGGAAGCAATGAGACAATATTACTATCAGATTGAAGAAAATAGTACAAGTAAATCACAAAGACAAAGTCAGAGTTTATTAACTGATGGGCCATGGACTGCTTCATCTTCATCAGCTGCAGATCTTTATCCTGTCCGCCTTGATTCTTCTTATTGGGAGGGAAGAAATTAA

Protein sequence

>MsaT009566.1

MATSSQFFFLSLILIWFIPLTAFGATTIHPDEKKALEDIAESLGKNDWNFNVDPCSNKPNWATPTPPGHRLQLVVNNVTCNCSVAGDNFCHVVSITLKGQNLPGVLPPELTRLQYLQFIDLSRNYLNGTIPKEWGSMTNIRNISLPSNRVTGSIPVEIANISTLIQLKLSSNNFTGELPATLAKLTTLQDFRIEDNQFSGKIPDFIQNWTNINTLIIQGSGLSGPIPSQISRLSNLTDLRISDLNGLEYAPLPQLDNMHSLKNLILRNCNINGELHDYLATITTLKHLDLSFNNLSGTIPSTYAEVSGAKFIFLTGNLLTGLVPAWKKNIDVDISYNNLSNSQGSQICQSDKLNLFSPSLAHNDIGTVSCLSGCPKPLYSLYINCGGKQAIVNKKSYDDDSDSSGAAKFHVSPTGNWAFSTTGMFIDGDQLGETYSPPNNARLTMADTELYMDARVSPISLTYYAFCLVNGSYTVNLHFAEIMITDDQTYGSLGRRLFDIYLQGKPVQKDFNIAEEAGGVGKKVVKPFKDVVVTSNTLEIQLYWAGKGTQSLPNRSVYGPLISAISVESADSPPGSITAGAVAGIVVAATTVVIIVFGILWWKGCFGKKNSLARELNSLDVQTGIFTLRQIKAATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLHGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIKLDWSTRKKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDANLDPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNTMYRSKEEAFYLLDWAHLLKERGDLMELVDRRLGLDFNKKEAMVMINVALLCTNVTSNLRPSMSSVVSMLEGNTVVPEFVSDSSEVMDEKKLEAMRQYYYQIEENSTSKSQRQSQSLLTDGPWTASSSSAADLYPVRLDSSYWEGRN*