AlfalfaGEDB | MsaG009580

M. sativa ssp. caerulea / MsaG009580

KEGG: -
GO: GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009580	XP_039686620.1	79.355	993	166	9	1	965	1	982	0.0	1553

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009580	sp\|C0LGN2\|Y3148_ARATH	52.275	989	412	19	1	940	1	978	0.0	987

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009580	tr\|G7IJE4\|G7IJE4_MEDTR	79.355	993	166	9	1	965	1	982	0.0	1553

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001414	MsaG009580	0.806048	1.683623e-49	2.615685e-47
MsaG003265	MsaG009580	0.836532	1.620439e-56	5.683059e-54
MsaG003907	MsaG009580	0.831368	3.132421e-55	9.428532e-53
MsaG004525	MsaG009580	0.859847	6.118039e-63	4.729127e-60
MsaG005205	MsaG009580	0.818217	3.835650e-52	8.050809e-50
MsaG005367	MsaG009580	0.819479	1.988244e-52	4.313108e-50
MsaG005477	MsaG009580	0.809406	3.281236e-50	5.523580e-48
MsaG006279	MsaG009580	0.809420	3.258639e-50	5.487522e-48
MsaG006832	MsaG009580	0.886511	6.951580e-72	1.715253e-68
MsaG007176	MsaG009580	0.870583	2.665179e-66	3.164588e-63

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG009580	MtrunA17_Chr2g0315081	79.355	993	166	9	1	965	1	982	1553
MsaG009580	MtrunA17_Chr2g0314911	77.368	1003	178	10	1	965	1	992	1524
MsaG009580	MtrunA17_Chr2g0314991	72.736	1005	218	10	2	968	519	1505	1410
MsaG009580	MtrunA17_Chr2g0314991	82.810	541	90	2	428	965	1	541	902
MsaG009580	MtrunA17_Chr5g0438071	65.396	971	293	12	22	965	23	977	1231
MsaG009580	MtrunA17_Chr2g0314901	64.141	990	321	14	8	965	12	999	1222
MsaG009580	MtrunA17_Chr2g0314841	60.515	970	345	16	1	941	5	965	1138
MsaG009580	MtrunA17_Chr2g0314821	59.362	972	356	16	1	941	5	968	1117
MsaG009580	MtrunA17_Chr8g0359641	57.113	970	378	14	25	960	25	990	1068
MsaG009580	MtrunA17_Chr8g0359651	57.026	975	379	15	17	957	19	987	1064

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG009580	AT3G14840.2	52.275	989	412	19	1	940	1	978	987
MsaG009580	AT1G53420.1	51.556	964	404	15	25	961	24	951	935
MsaG009580	AT1G07650.1	50.896	1004	438	19	7	965	9	1002	912
MsaG009580	AT1G07650.2	50.594	1010	438	20	7	965	9	1008	905
MsaG009580	AT1G53430.1	49.405	1008	446	20	12	968	13	1007	895
MsaG009580	AT1G53440.1	49.900	1004	448	23	12	969	11	1005	880
MsaG009580	AT1G53430.2	49.487	974	434	19	32	968	14	966	870
MsaG009580	AT1G07650.3	49.303	1004	428	20	7	965	9	976	870
MsaG009580	AT1G29750.2	47.479	952	445	19	7	916	22	960	811
MsaG009580	AT1G29750.1	48.268	924	424	18	35	916	34	945	808

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Find 219 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACCATGTATCGGTCAA+TGG	0.525655	2:-61820382	MsaT009580.1:CDS
AAACCAAAATCCGATATCTT+TGG	0.295496	2:+61820659	None:intergenic
AAACTTATGGTAGTCTTGGA+AGG	0.584831	2:-61822228	MsaT009580.1:CDS
AAAGCAGATGTTTATAGTTT+TGG	0.214365	2:-61820438	MsaT009580.1:CDS
AAATAGTTTGGACGTACAGA+CGG	0.559559	2:-61821353	MsaT009580.1:CDS
AAATATTGCTACACTTACTA+TGG	0.326013	2:-61822377	MsaT009580.1:CDS
AACACCAGATAAAATTAGTT+TGG	0.354165	2:-61820808	MsaT009580.1:CDS
AACAGAAGCTTGAAGTAATG+AGG	0.547783	2:-61819335	MsaT009580.1:CDS
AACCAAAATCCGATATCTTT+GGG	0.386162	2:+61820660	None:intergenic
AACTCTGCAGAAGTTGTCAC+CGG	0.596688	2:+61835948	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	61819227	61836406	61819227	ID=MsaG009580
Chr2	mRNA	61819227	61836406	61819227	ID=MsaT009580.1;Parent=MsaG009580
Chr2	exon	61819227	61819577	61819227	ID=MsaT009580.1.exon23;Parent=MsaT009580.1
Chr2	CDS	61819227	61819577	61819227	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61820356	61820506	61820356	ID=MsaT009580.1.exon22;Parent=MsaT009580.1
Chr2	CDS	61820356	61820506	61820356	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61820602	61820839	61820602	ID=MsaT009580.1.exon21;Parent=MsaT009580.1
Chr2	CDS	61820602	61820839	61820602	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61820956	61821166	61820956	ID=MsaT009580.1.exon20;Parent=MsaT009580.1
Chr2	CDS	61820956	61821166	61820956	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61821261	61821379	61821261	ID=MsaT009580.1.exon19;Parent=MsaT009580.1
Chr2	CDS	61821261	61821379	61821261	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61821579	61821710	61821579	ID=MsaT009580.1.exon18;Parent=MsaT009580.1
Chr2	CDS	61821579	61821710	61821579	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61821799	61821994	61821799	ID=MsaT009580.1.exon17;Parent=MsaT009580.1
Chr2	CDS	61821799	61821994	61821799	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61822204	61822583	61822204	ID=MsaT009580.1.exon16;Parent=MsaT009580.1
Chr2	CDS	61822204	61822583	61822204	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61822891	61822928	61822891	ID=MsaT009580.1.exon15;Parent=MsaT009580.1
Chr2	CDS	61822891	61822928	61822891	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61823033	61823068	61823033	ID=MsaT009580.1.exon14;Parent=MsaT009580.1
Chr2	CDS	61823033	61823068	61823033	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61823150	61823212	61823150	ID=MsaT009580.1.exon13;Parent=MsaT009580.1
Chr2	CDS	61823150	61823212	61823150	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61823951	61824010	61823951	ID=MsaT009580.1.exon12;Parent=MsaT009580.1
Chr2	CDS	61823951	61824010	61823951	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61824456	61824527	61824456	ID=MsaT009580.1.exon11;Parent=MsaT009580.1
Chr2	CDS	61824456	61824527	61824456	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61825151	61825222	61825151	ID=MsaT009580.1.exon10;Parent=MsaT009580.1
Chr2	CDS	61825151	61825222	61825151	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61834399	61834473	61834399	ID=MsaT009580.1.exon9;Parent=MsaT009580.1
Chr2	CDS	61834399	61834473	61834399	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61834585	61834656	61834585	ID=MsaT009580.1.exon8;Parent=MsaT009580.1
Chr2	CDS	61834585	61834656	61834585	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61834758	61834829	61834758	ID=MsaT009580.1.exon7;Parent=MsaT009580.1
Chr2	CDS	61834758	61834829	61834758	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61834909	61835007	61834909	ID=MsaT009580.1.exon6;Parent=MsaT009580.1
Chr2	CDS	61834909	61835007	61834909	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61835235	61835306	61835235	ID=MsaT009580.1.exon5;Parent=MsaT009580.1
Chr2	CDS	61835235	61835306	61835235	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61835479	61835550	61835479	ID=MsaT009580.1.exon4;Parent=MsaT009580.1
Chr2	CDS	61835479	61835550	61835479	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61835679	61835750	61835679	ID=MsaT009580.1.exon3;Parent=MsaT009580.1
Chr2	CDS	61835679	61835750	61835679	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61835940	61836099	61835940	ID=MsaT009580.1.exon2;Parent=MsaT009580.1
Chr2	CDS	61835940	61836099	61835940	ID=cds.MsaT009580.1;Parent=MsaT009580.1
Chr2	exon	61836310	61836406	61836310	ID=MsaT009580.1.exon1;Parent=MsaT009580.1
Chr2	CDS	61836310	61836406	61836310	ID=cds.MsaT009580.1;Parent=MsaT009580.1

Gene Sequence

>MsaT009580.1

ATGAGCACTTCCTCTCAATTTCTCTTCCTTTCACTCATTCTCATTTGGTTCATATCTCTAACAGCTTTTGGAGCCACTACTATCCACCCTGATGAAAAGAAAGCTCTTGAAGTTATAGCTAAATCACTTGGTAAGAAGGATTGGAACTTCGACATTGATCCATGCAGCAACAAACCTAATTGGTTTACAAATGAACATAATAATGTCACTTGTAACTGTAGTGTTGCCGGTGACAACTTCTGCAGAGTTGTTTCGATAATTTTGAGATTGCAAAATCTCACCGGAACACTCCCACCGGAACTAACCAGGTTCCCTTACCTTCAAATTATTGACCTCTCTGTCAATTACTTGAATGGTACAATTCCTAAAGAATGGGGCTCCATGGCGAATATTAGAAAAATTTCTCTTGTCGGAAATCGATTAACGGGTTCAATACCAGTGGAGATCGCAAACATTACTACTCTGCAAGACTTGCGACTTTCATCTAACAATTTCTTTGGAGAACTACTCATGCGACATTGGCAAAGCTCACTACATTGCAAGATTTGTAAGCTTCAAAGTTTTATGGTGATCCGAATTCAGGACAACCAATTCTCTGGAAAGATACCTGATTATATTCAGAACTGGACAAGTATCAAAACACTAGTGATTCAAGGAAGCGGATTAAGTGGGCCGATTCCATCTGGAATTTCACTTTTGACAAACATAACTGACTTGAGGGTTAGTGATTTGAATGGATCTGAACATGCACCTTTGCCACAACTTAATAATATGACATCGTTAAAAACTCTGATTCTGAGGAACTGCAACATCCGTGGAAAACTACATGATTATATTGGGAATATGGCATCATTAAAACACTTAGACCTCAGCTTTAACAAATTAAGTGGAACAATTCCGAGTACTTATGCTGCAATGAACAGTTCAGATTATATCTTTTTGACTGGAAACCTTCTCAGTGGACCAGTGCCTCATTGGAACACTGATGTTTACGTAGATCTTTCATACAATAACTTCAGCATAAGCCAAGTGAGTCAGATATGTCGCGAAGAAAATGTAAACTTGTTTTCTACCTCATGGGCGCGCAATGACATAGGAACAGATCCCTGTTTGAGCTTTCAATGTCCCAAACCCTCATACTCCCTTTATATAAATTGTGGTGGAATGGAAGCAATAGTCAACGGAACAAGATATTATGGTGATCCAGATTTACCTGGACCAGCTAGATTCCATGTCAGTTCAAAAGAAAACTGGGCATTTAGCACCAGTACTGGTATATTCCTTGAAAGTAAACTTGGAAAAATTTATTCCCCGAAAAATATTGCTACACTTACTATGGAAGATGCTGAATTGTACATGACTGCCCGAGTTTCTCCTAATTCTTTAACTTATTACGGGTTTTGCCTGGCAAATGGAAGCTACACAGTAAATCTACATTTTGCTGAAATAATGTTTACAGACGATCAAACTTATGGTAGTCTTGGAAGGCGTATATTTGATATCTACCTTCAGGGAAAGCTGGTGCAAAAGGACTTCAATATTGCAGAAGAAGCAGGAGGAATTGGTAAGAAAGTCATAAAACAATTCAATGTTCTTGTTACTAGTAATACTCTGGAGATCCGCTTATATTGGGCTGGAAAAGGGACGCTGGCTCTCCCAATTAAATCAGTATATGGTCCTCTTATATCAGCTATATCAGTGGAATCTGACTCTCCACCTGGAAGCATATCTACAGGAGCTGTAGTTGGAATTGTGGTTGCAGAAACAATTGTTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTCGGAATGAAAAATTCTTTAACAAGAGAGCTAAATAGTTTGGACGTACAGACGGGTTTATTTACCTTAAGACAGATCAAAGCAGCAACAGATAACTTTGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCTGTTTACAAGGGATGTTTACCCAATGGGACATTGATAGCAGTGAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATTGTGAGTTTCTAAACGAGATAGGCATGATTTCTGCTTTGCAACATCCTTATCTTGTTAGACTCCACGGTTGTTGTGTGGAGGGAGATCAATTGTTGCTGATATATGAATACTTGGAAAACAATAGTCTTGCTCGTGCTTTATTTGGTCCAGAGGAACACCAGATAAAATTAGTTTGGTCTACAAGGCAGAAGATATGTGTTGGTATTGCTAGAGGTTTGGCATACCTCCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCCACTAATATTTTGCTTGATATGAATCTTGACCCAAAGATATCGGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAAAACTCACATTAGCACTAGAATTGCAGGGACCTATGGATACATGGCTCCTGAATATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATCGTTAGTGGAAGGAAAAACACCATGTATCGGTCAATGGAGGAAGCGATCTATCTTCTGGAATGGGCACATTTGTTGAAAGAGAGAGGTGACCTAATGGAGTTAGTTGATGGAAGATTAGGTTCAGATTTCAACAAAAAGGAAGCTATGGTGATGATAAATGTGGCTCTCCTGTGCACCAATGACACTTCAAACCTTAGGCCGTCTATGTCATCAGTGGTAAGTATGCTTGAAGGAAGGACTGTGGTTCCAGAATTTGTTTCAGATTCAGGTGAAGTAATGGATGAACAGAAGCTTGAAGTAATGAGGCAGTATTACTCTCAAGTGGAAGAAAATAAGGTAAGTAACTCACAAAGTCGGAGTTTATCAAGTGATGATCAATGTACTGCTTCATCTTCATCCCAATGTCCAACTTGA

Protein sequence

>MsaT009580.1

MSTSSQFLFLSLILIWFISLTAFGATTIHPDEKKALEVIAKSLGKKDWNFDIDPCSNKPNWFTNEHNNVTCNCSVAGDNFCRVVSIILRLQNLTGTLPPELTRFPYLQIIDLSVNYLNGTIPKEWGSMANIRKISLVGNRLTGSIPVEIANITTLQDLRLSSNNFFGELLMRHWQSSLHCKICKLQSFMVIRIQDNQFSGKIPDYIQNWTSIKTLVIQGSGLSGPIPSGISLLTNITDLRVSDLNGSEHAPLPQLNNMTSLKTLILRNCNIRGKLHDYIGNMASLKHLDLSFNKLSGTIPSTYAAMNSSDYIFLTGNLLSGPVPHWNTDVYVDLSYNNFSISQVSQICREENVNLFSTSWARNDIGTDPCLSFQCPKPSYSLYINCGGMEAIVNGTRYYGDPDLPGPARFHVSSKENWAFSTSTGIFLESKLGKIYSPKNIATLTMEDAELYMTARVSPNSLTYYGFCLANGSYTVNLHFAEIMFTDDQTYGSLGRRIFDIYLQGKLVQKDFNIAEEAGGIGKKVIKQFNVLVTSNTLEIRLYWAGKGTLALPIKSVYGPLISAISVESDSPPGSISTGAVVGIVVAETIVIILVFGILWWKGCFGMKNSLTRELNSLDVQTGLFTLRQIKAATDNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQLSSKSKQGNCEFLNEIGMISALQHPYLVRLHGCCVEGDQLLLIYEYLENNSLARALFGPEEHQIKLVWSTRQKICVGIARGLAYLHEESRLKVVHRDIKATNILLDMNLDPKISDFGLAKLDEEDKTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGRKNTMYRSMEEAIYLLEWAHLLKERGDLMELVDGRLGSDFNKKEAMVMINVALLCTNDTSNLRPSMSSVVSMLEGRTVVPEFVSDSGEVMDEQKLEVMRQYYSQVEENKVSNSQSRSLSSDDQCTASSSSQCPT*