AlfalfaGEDB | MsaG009582

M. sativa ssp. caerulea / MsaG009582

KEGG: -
GO: GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564
PFAM: PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009582	AES66493.2	81.587	983	126	3	1	940	1	971	0.0	1635

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009582	sp\|C0LGN2\|Y3148_ARATH	51.547	1034	406	22	1	954	1	1019	0.0	979

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009582	tr\|G7IJE2\|G7IJE2_MEDTR	81.587	983	126	3	1	940	1	971	0.0	1635

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG009582	MtrunA17_Chr2g0315081	80.986	994	144	4	1	949	1	994	1600
MsaG009582	MtrunA17_Chr2g0314911	76.832	1010	179	5	1	955	1	1010	1541
MsaG009582	MtrunA17_Chr2g0314991	75.657	990	174	7	21	955	538	1515	1459
MsaG009582	MtrunA17_Chr2g0314991	84.837	521	77	1	429	947	31	551	895
MsaG009582	MtrunA17_Chr5g0438071	65.479	982	266	13	25	949	25	990	1236
MsaG009582	MtrunA17_Chr2g0314901	63.475	1013	301	19	7	955	10	1017	1216
MsaG009582	MtrunA17_Chr2g0314841	56.256	1015	366	17	1	948	5	1008	1083
MsaG009582	MtrunA17_Chr2g0314821	55.906	1016	371	17	1	948	5	1011	1078
MsaG009582	MtrunA17_Chr8g0359651	56.718	975	352	16	17	928	19	986	1035
MsaG009582	MtrunA17_Chr8g0359641	56.108	966	358	14	25	928	25	986	1027

Showing 1 to 10 of 588 entries

Previous1 2 3 4 5…59Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG009582	AT3G14840.2	51.547	1034	406	22	1	954	1	1019	979
MsaG009582	AT1G07650.1	50.000	1006	422	18	7	940	9	1005	905
MsaG009582	AT1G53420.1	50.881	965	381	17	25	933	24	951	904
MsaG009582	AT1G07650.2	49.704	1012	422	19	7	940	9	1011	898
MsaG009582	AT1G53430.1	49.797	986	409	18	14	920	15	993	894
MsaG009582	AT1G53430.2	50.369	949	381	17	42	920	24	952	873
MsaG009582	AT1G07650.3	48.410	1006	412	18	7	940	9	979	867
MsaG009582	AT1G53440.1	49.390	984	416	20	14	920	13	991	866
MsaG009582	AT1G29750.2	46.524	978	452	18	7	921	22	991	823
MsaG009582	AT1G29750.1	47.158	950	432	17	35	921	34	976	816

Showing 1 to 10 of 552 entries

Previous1 2 3 4 5…56Next

Find 225 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGAGAGGTGACTTAA+TGG	0.309857	2:-61893304	MsaT009582.1:CDS
AAACACCATGTATCGGTCTA+TGG	0.402487	2:-61893742	MsaT009582.1:CDS
AAACCAAAATCAGATATCTT+TGG	0.346888	2:+61894087	None:intergenic
AAACGTATGGTAGTCTTGGA+AGG	0.583578	2:-61896083	MsaT009582.1:CDS
AAAGCGGATGTTTATAGTTT+TGG	0.214365	2:-61893798	MsaT009582.1:CDS
AACAACAAATAAAACTTGAT+TGG	0.443413	2:-61894236	MsaT009582.1:CDS
AACATGGCAGACGTTGTCAC+CGG	0.588733	2:+61900089	None:intergenic
AACCGCTATCAATGTCCCAT+TGG	0.500265	2:+61894562	None:intergenic
AAGACTGAAGGTTGTTCACA+GGG	0.661140	2:-61894151	MsaT009582.1:CDS
AAGATATAGCCAAATCACTT+GGG	0.615629	2:-61900206	MsaT009582.1:CDS

Showing 1 to 10 of 225 entries

Previous1 2 3 4 5…23Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	61892945	61900426	61892945	ID=MsaG009582
Chr2	mRNA	61892945	61900426	61892945	ID=MsaT009582.1;Parent=MsaG009582
Chr2	exon	61892945	61893337	61892945	ID=MsaT009582.1.exon24;Parent=MsaT009582.1
Chr2	CDS	61892945	61893337	61892945	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61893716	61893866	61893716	ID=MsaT009582.1.exon23;Parent=MsaT009582.1
Chr2	CDS	61893716	61893866	61893716	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61894030	61894267	61894030	ID=MsaT009582.1.exon22;Parent=MsaT009582.1
Chr2	CDS	61894030	61894267	61894030	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61894384	61894594	61894384	ID=MsaT009582.1.exon21;Parent=MsaT009582.1
Chr2	CDS	61894384	61894594	61894384	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61894711	61894829	61894711	ID=MsaT009582.1.exon20;Parent=MsaT009582.1
Chr2	CDS	61894711	61894829	61894711	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61895481	61895612	61895481	ID=MsaT009582.1.exon19;Parent=MsaT009582.1
Chr2	CDS	61895481	61895612	61895481	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61895702	61895900	61895702	ID=MsaT009582.1.exon18;Parent=MsaT009582.1
Chr2	CDS	61895702	61895900	61895702	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61896059	61896200	61896059	ID=MsaT009582.1.exon17;Parent=MsaT009582.1
Chr2	CDS	61896059	61896200	61896059	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61896257	61896437	61896257	ID=MsaT009582.1.exon16;Parent=MsaT009582.1
Chr2	CDS	61896257	61896437	61896257	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61897075	61897109	61897075	ID=MsaT009582.1.exon15;Parent=MsaT009582.1
Chr2	CDS	61897075	61897109	61897075	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61897230	61897265	61897230	ID=MsaT009582.1.exon14;Parent=MsaT009582.1
Chr2	CDS	61897230	61897265	61897230	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61897347	61897409	61897347	ID=MsaT009582.1.exon13;Parent=MsaT009582.1
Chr2	CDS	61897347	61897409	61897347	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61897538	61897597	61897538	ID=MsaT009582.1.exon12;Parent=MsaT009582.1
Chr2	CDS	61897538	61897597	61897538	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61898134	61898205	61898134	ID=MsaT009582.1.exon11;Parent=MsaT009582.1
Chr2	CDS	61898134	61898205	61898134	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61898386	61898457	61898386	ID=MsaT009582.1.exon10;Parent=MsaT009582.1
Chr2	CDS	61898386	61898457	61898386	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61898554	61898628	61898554	ID=MsaT009582.1.exon9;Parent=MsaT009582.1
Chr2	CDS	61898554	61898628	61898554	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61898725	61898796	61898725	ID=MsaT009582.1.exon8;Parent=MsaT009582.1
Chr2	CDS	61898725	61898796	61898725	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61898900	61898971	61898900	ID=MsaT009582.1.exon7;Parent=MsaT009582.1
Chr2	CDS	61898900	61898971	61898900	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61899047	61899118	61899047	ID=MsaT009582.1.exon6;Parent=MsaT009582.1
Chr2	CDS	61899047	61899118	61899047	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61899416	61899487	61899416	ID=MsaT009582.1.exon5;Parent=MsaT009582.1
Chr2	CDS	61899416	61899487	61899416	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61899678	61899749	61899678	ID=MsaT009582.1.exon4;Parent=MsaT009582.1
Chr2	CDS	61899678	61899749	61899678	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61899882	61899953	61899882	ID=MsaT009582.1.exon3;Parent=MsaT009582.1
Chr2	CDS	61899882	61899953	61899882	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61900081	61900240	61900081	ID=MsaT009582.1.exon2;Parent=MsaT009582.1
Chr2	CDS	61900081	61900240	61900081	ID=cds.MsaT009582.1;Parent=MsaT009582.1
Chr2	exon	61900330	61900426	61900330	ID=MsaT009582.1.exon1;Parent=MsaT009582.1
Chr2	CDS	61900330	61900426	61900330	ID=cds.MsaT009582.1;Parent=MsaT009582.1

Gene Sequence

>MsaT009582.1

ATGAGAACTTCCTCTCAATTTCCCTTCCTTTCGTTCAGTGTCATTTGGTTTATATCTCTAACAGCTTTTAGAGCTACTACTATTCACCCTGACGAAAAGAAAGCTCTTGAAGATATAGCCAAATCACTTGGGAAGAAGGATTGGAACTTCGACATTGATCCATGCAGCAACAAACTTAACTGGTCTATAAATATAGCGAACAAAGTGACCTGTAACTGCTCTGTAGCCGGTGACAACGTCTGCCATGTTGTTGCAATAACTTTGAAAGGGCAAAGTCTCCAGGGTACTCTCCCACCGGAATTGAACAGGCTGCGTTACCTTCAAATTATTGACCTGTCTCGCAATTATTTGAACGGTACAATTCCTAAAGAATGGGGCTCCATGATGAATATTATTAAAATTTCTCTCATCGGCAATCGATTAACGGGTTCAATACCAGTGGAGATTGCAAACATATCTACTCTAAAACAGTTACGAATTTCCTCTAACAATTTTACTGGAGAACTGCCAATGACATTAGCCAAGCTCACTACTTTGCAAGATTTCCGAATTGAGGACAACCAATTCTCTGGAAAGATTCCTGATTATATTCAAAACTGGAAAAATATCAAAACACTAATGATTCAAGGAAGTGGATTAAGTGGGCCGGTTCCTTCTGTAATTTCACTTTTGAGAAACTTAACTGACCTGAGAATTAGTGATTTGAAGGGATCTGAATATGCACCTTTGCCACAACTTAATAATATGATATTGTTAGAAACTCTGGTTCTGAGGAAATGCAATATCAACGGAACACTACCAGAATATCTTGGGAATATGACAAAATTAATTCGCTTGGACCTCAGCTTTAACAACATAAGTGAAACAATTCCGAGTATCTATGCTACCAATAACAGTCTGCAATACATATTTTTAACTGGAAACAACCTTACAGGACTGGTGCCTTCATGGGGAAATAACGTTAACGTAGATCTTTCATACAATAACTTCAGCATCAGCCAAGGGAGTCAGATATGTCACGATGAAAAAGTGAACTTGTTTTCTACCTCATGGGCACACAATGACATAGCAAAAGTTTCGTGTTTGAGGGAATGTCGTAAATACTCATATTCCCTTTATATAAATTGTGGTGGAAGGCAAGCAACAATCAACAAAATAACTTATGATGATGATTCCGATGCATCTGGACCAACTAAGTTCCATCTCAGTCCAACAGGAAATTGGGCATTTAGCACTACTGGTATATTCATTGATCATGATCATCTTGGAGAAACTTATTCCCCTTCTCCTATTTCTTTGACTTACTATGGCTTTTGCCTGGCAAATGGAAGCTACACAGTAAAACTACATTTTGCTGAAATAATGTTCACAAACGATCAAACGTATGGTAGTCTTGGAAGGCGTGTATTTGATATCTACCTTCAGGGAAATCTGGTTCAAAAGGACTTCAATATTGCAGAAGAAGCAGGAGGGGTTGGTAAGGAAGTCATAAAACCGTTCAAAGATGTTGTTGTTACTAGTAATACCTTGGAGATCCGTTTGTATTGGGCTGGAAAAGGGACACAGTATCTCCCAAACATATCAGTATACGGTCCTCTTATATCAACTATATCAGTGGAATCTGACTCTCCACCTGGAAGCATATCTGCAGGAGTTGTGGTTGGAATTGTCGTTGCAGCAACAGCTATTATCGTTCTAGTATTTGGTATACTGTGGTGGAAAGGATGTTTTGGAAAGAAAAACTCATTAACAACAGAGATAAATAGCTTGGACCTACAGACGTATTTATTTACCTTAAGACAAATCAAAGCAGCAACAAATAACTTTGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGCCCCGTGTACAAGGGATGTTTACCCAATGGGACATTGATAGCGGTTAAGCAACATTCTTCAAAATCAAAGCAAGGGAATCGTGAGTTTTTAAACGAGATAGGAATGATTTCTGCTTTGCAACATCCTTATCTTGTTAGACTCCACGGTTGTTGTGTGGAGGGAGATCAGTTGTTGCTGATTTATGAATACTTGGAAAACAATAGTCTTGCTCGTGCTTTATTTGGTCCAGAGGAACAACAAATAAAACTTGATTGGTCAACAAGGCAGAAGATCTGTGTTGGTATTGCTGGAGGATTGGCATTCCTCCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACGTCAAGGCCACTAATGTTTTGCTTGATAAAGATCTCGATCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATTAGCACTAGAATTGTTGGGACCTATGGATACATGGCTCCTGAATATGCAATGCATGGTTATTTGACAGACAAAGCGGATGTTTATAGTTTTGGAATTCTTGCTTTGGAAATTGTTAGTGGAAGGAGAAACACCATGTATCGGTCTATGGAGGAAGCCTTCTATCTTCTGGAATGGGCACAGTTGTTAAAAGAGAGAGGTGACTTAATGGAGCTAGTTGATAGCAGACTAGGTTCAGATTTCAACAAAAAGGAAGCAATGGTGATGATCAATGTGGCTCTCCTGTGCACCAATGACACTTCAAACCTTAGGCCCTCTATGTCCTCAGTGGTAAGTATGCTAGAAGGAAGGACTGTGGTTCCAGAATTTGTTTCAGATTCAAGTGACGTAATGGATGAACAGAAGTTGGAAGTAATGAAGCAGTATTACTCTCGAATGGAAGAAAGTAAGGTAAGCAAGTCACAAAGTCGGAGTTTATCAATTGATTATCAATGTACTGCTTCATCTTCATCAACTGTAGACCTTTATCCTGCCACAATTGATTCTTCCGAATGGGATGAAAAAAATTAA

Protein sequence

>MsaT009582.1

MRTSSQFPFLSFSVIWFISLTAFRATTIHPDEKKALEDIAKSLGKKDWNFDIDPCSNKLNWSINIANKVTCNCSVAGDNVCHVVAITLKGQSLQGTLPPELNRLRYLQIIDLSRNYLNGTIPKEWGSMMNIIKISLIGNRLTGSIPVEIANISTLKQLRISSNNFTGELPMTLAKLTTLQDFRIEDNQFSGKIPDYIQNWKNIKTLMIQGSGLSGPVPSVISLLRNLTDLRISDLKGSEYAPLPQLNNMILLETLVLRKCNINGTLPEYLGNMTKLIRLDLSFNNISETIPSIYATNNSLQYIFLTGNNLTGLVPSWGNNVNVDLSYNNFSISQGSQICHDEKVNLFSTSWAHNDIAKVSCLRECRKYSYSLYINCGGRQATINKITYDDDSDASGPTKFHLSPTGNWAFSTTGIFIDHDHLGETYSPSPISLTYYGFCLANGSYTVKLHFAEIMFTNDQTYGSLGRRVFDIYLQGNLVQKDFNIAEEAGGVGKEVIKPFKDVVVTSNTLEIRLYWAGKGTQYLPNISVYGPLISTISVESDSPPGSISAGVVVGIVVAATAIIVLVFGILWWKGCFGKKNSLTTEINSLDLQTYLFTLRQIKAATNNFDISNKIGEGGFGPVYKGCLPNGTLIAVKQHSSKSKQGNREFLNEIGMISALQHPYLVRLHGCCVEGDQLLLIYEYLENNSLARALFGPEEQQIKLDWSTRQKICVGIAGGLAFLHEESRLKVVHRDVKATNVLLDKDLDPKISDFGLAKLDEEDNTHISTRIVGTYGYMAPEYAMHGYLTDKADVYSFGILALEIVSGRRNTMYRSMEEAFYLLEWAQLLKERGDLMELVDSRLGSDFNKKEAMVMINVALLCTNDTSNLRPSMSSVVSMLEGRTVVPEFVSDSSDVMDEQKLEVMKQYYSRMEESKVSKSQSRSLSIDYQCTASSSSTVDLYPATIDSSEWDEKN*