AlfalfaGEDB | MsaG009612

M. sativa ssp. caerulea / MsaG009612

KEGG: -
GO: GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009612	RDX67421.1	56.522	161	54	8	4	155	1	154	1.10e-44	159

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009612	sp\|Q9LY00\|WRK70_ARATH	36.111	144	75	7	15	155	11	140	3.00e-13	68.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009612	tr\|A0A371EMX9\|A0A371EMX9_MUCPR	56.522	161	54	8	4	155	1	154	5.24e-45	159

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TFs/TRs:

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Gene ID	Type	Classification
MsaG009612	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009612	MtrunA17_Chr2g0315391	70.000	120	24	7	6	120	4	116	2.23e-44	142
MsaG009612	MtrunA17_Chr2g0315351	70.833	120	23	7	6	120	4	116	3.49e-44	141
MsaG009612	MtrunA17_Chr2g0315371	43.636	165	65	6	8	155	8	161	4.21e-33	118
MsaG009612	MtrunA17_Chr2g0315361	45.679	162	73	6	8	155	8	168	2.58e-26	100
MsaG009612	MtrunA17_Chr2g0315381	47.647	170	68	10	1	155	1	164	5.96e-25	97.4
MsaG009612	MtrunA17_Chr7g0244971	38.732	142	66	3	19	155	18	143	8.05e-22	89.0
MsaG009612	MtrunA17_Chr7g0244981	36.691	139	73	3	19	155	17	142	3.18e-19	81.6
MsaG009612	MtrunA17_Chr8g0350621	32.609	138	78	3	18	155	9	131	3.08e-17	76.3
MsaG009612	MtrunA17_Chr8g0334541	40.000	145	59	7	14	155	4	123	3.20e-16	73.6
MsaG009612	MtrunA17_Chr8g0350641	37.383	107	55	4	52	155	42	139	1.33e-14	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009612	AT3G56400.1	36.111	144	75	7	15	155	11	140	3.05e-14	68.6

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Find 25 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCACTTACTTGGGAGA+AGG	0.572656	2:-62390916	MsaT009612.1:CDS
AAGATCAAAAGCACTTACTT+GGG	0.571753	2:-62390922	MsaT009612.1:CDS
ACATCCTTCAAACTGGAGAA+AGG	0.530528	2:-62404694	MsaT009612.1:CDS
AGAAGATTATAAAGCTTGCA+AGG	0.506891	2:-62404409	MsaT009612.1:CDS
ATGAAACAAAAGCTAATTAG+AGG	0.424324	2:-62404666	MsaT009612.1:CDS
ATTTCCTTTCTCCAGTTTGA+AGG	0.404054	2:+62404690	None:intergenic
CTTAGCAAGATCTTGAGCAA+AGG	0.579837	2:+62404560	None:intergenic
GAAGATTATAAAGCTTGCAA+GGG	0.531348	2:-62404408	MsaT009612.1:CDS
GCTTGTGACAAATCTTTGAT+AGG	0.326468	2:+62404462	None:intergenic
GGCTATGAATGGAGAAAGTA+TGG	0.339396	2:-62390870	MsaT009612.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	62387418	62404733	62387418	ID=MsaG009612
Chr2	mRNA	62387418	62404733	62387418	ID=MsaT009612.1;Parent=MsaG009612
Chr2	exon	62387418	62387427	62387418	ID=MsaT009612.1.exon3;Parent=MsaT009612.1
Chr2	CDS	62387418	62387427	62387418	ID=cds.MsaT009612.1;Parent=MsaT009612.1
Chr2	exon	62390837	62390941	62390837	ID=MsaT009612.1.exon2;Parent=MsaT009612.1
Chr2	CDS	62390837	62390941	62390837	ID=cds.MsaT009612.1;Parent=MsaT009612.1
Chr2	exon	62404375	62404733	62404375	ID=MsaT009612.1.exon1;Parent=MsaT009612.1
Chr2	CDS	62404375	62404733	62404375	ID=cds.MsaT009612.1;Parent=MsaT009612.1

Gene Sequence

>MsaT009612.1

ATGGACCAGATTCAACAACATCCTTCAAACTGGAGAAAGGAAATTATGAAACAAAAGCTAATTAGAGGTCGTGACACAGCAAATCAATTACTTGAAGTAATTACTTACAAATTGGTCAATATTCCTCACCATGGAGATTTAGATCAATTACCCTTTGCTCAAGATCTTGCTAAGAAGGTACTTAGATCATTCACAAATTCTCTTTTTCTATTGAACACTAGTAATGATGTCTTCAATGAGGAGTTTTTGCCTATCAAAGATTTGTCACAAGCAAATTGCCCAAAGCTTGAAGTTGAGGATACAGAAGATTATAAAGCTTGCAAGGGTTTTAAAACTCAAAGAGGCTGCTCCAAAAGAAAATCAAAAGCACTTACTTGGGAGAAGGATAGCTCAATTTTGTTTGAAGATGGCTATGAATGGAGAAAGTATGGACAAAAGAAGATAATCAATGCAAAATACCTCAGGAGAAAATAA

Protein sequence

>MsaT009612.1

MDQIQQHPSNWRKEIMKQKLIRGRDTANQLLEVITYKLVNIPHHGDLDQLPFAQDLAKKVLRSFTNSLFLLNTSNDVFNEEFLPIKDLSQANCPKLEVEDTEDYKACKGFKTQRGCSKRKSKALTWEKDSSILFEDGYEWRKYGQKKIINAKYLRRK*