AlfalfaGEDB | MsaG009647

M. sativa ssp. caerulea / MsaG009647

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0007275 GO:0008150 GO:0008289 GO:0009536 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF01167.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009647	XP_003596347.1	92.098	367	29	0	1	367	1	367	0.0	715

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009647	sp\|Q93VI8\|TLP7_ARATH	62.500	384	122	7	1	367	1	379	1.50e-157	450

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009647	tr\|Q2HS99\|Q2HS99_MEDTR	92.098	367	29	0	1	367	1	367	0.0	715

TFs/TRs:

Gene ID	Type	Classification
MsaG009647	TF	TUB

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG006199	MsaG009647	0.809563	3.037299e-50	5.132568e-48
MsaG006233	MsaG009647	0.807045	1.039516e-49	1.653479e-47
MsaG006669	MsaG009647	0.800167	2.734786e-48	3.711451e-46
MsaG007580	MsaG009647	0.802728	8.217983e-49	1.182058e-46
MsaG009647	MsaG017459	0.809425	3.250037e-50	5.473800e-48
MsaG009647	MsaG021410	0.810980	1.507818e-50	2.637199e-48
MsaG009647	MsaG024640	0.806042	1.688147e-49	2.622357e-47
MsaG009647	MsaG025282	0.810480	1.931663e-50	3.337616e-48
MsaG009647	MsaG037439	0.810179	2.241590e-50	3.844667e-48
MsaG009647	MsaG040265	0.800622	2.211551e-48	3.032528e-46
MsaG009647	MsaG045051	0.807863	6.982012e-50	1.132535e-47
MsaG009647	MsaG046700	0.808957	4.091305e-50	6.813249e-48
MsaG009647	MsaG004542	0.802099	1.105849e-48	1.567878e-46
MsaG009647	MsaG018328	0.804696	3.221412e-49	4.849473e-47
MsaG009647	MsaG020214	0.802994	7.243478e-49	1.048316e-46
MsaG009647	MsaG033379	0.803937	4.629876e-49	6.848207e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009647	MtrunA17_Chr2g0315651	92.098	367	29	0	1	367	1	367	0.0	715
MsaG009647	MtrunA17_Chr2g0315641	74.462	372	86	5	1	367	4	371	0.0	561
MsaG009647	MtrunA17_Chr2g0286441	47.500	360	155	7	37	367	39	393	4.88e-105	314
MsaG009647	MtrunA17_Chr5g0404321	46.995	366	155	9	37	367	55	416	3.24e-102	308
MsaG009647	MtrunA17_Chr8g0373001	46.133	375	167	6	25	367	41	412	7.05e-102	306
MsaG009647	MtrunA17_Chr1g0196071	45.983	361	157	9	37	367	50	402	1.01e-96	293
MsaG009647	MtrunA17_Chr1g0201891	43.864	383	159	10	37	367	53	431	2.64e-95	290
MsaG009647	MtrunA17_Chr1g0155301	45.938	357	163	9	37	367	70	422	2.54e-93	285
MsaG009647	MtrunA17_Chr2g0278511	42.744	379	164	10	37	367	54	427	3.90e-92	282
MsaG009647	MtrunA17_Chr8g0373361	37.838	370	186	8	25	360	46	405	6.04e-68	219
MsaG009647	MtrunA17_Chr8g0373331	38.310	355	154	10	25	360	40	348	8.05e-55	183
MsaG009647	MtrunA17_Chr8g0373341	36.443	343	130	11	34	357	47	320	7.57e-39	141
MsaG009647	MtrunA17_Chr1g0156151	46.429	140	71	1	52	187	66	205	5.33e-34	125
MsaG009647	MtrunA17_Chr8g0373351	35.088	285	122	10	91	359	49	286	4.44e-27	108

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009647	AT1G53320.1	62.500	384	122	7	1	367	1	379	1.52e-158	450
MsaG009647	AT2G18280.2	46.875	352	166	5	34	367	45	393	2.14e-102	308
MsaG009647	AT2G18280.1	46.875	352	166	5	34	367	45	393	2.14e-102	308
MsaG009647	AT2G47900.2	43.611	360	169	6	37	367	52	406	5.14e-100	302
MsaG009647	AT2G47900.1	43.611	360	169	6	37	367	52	406	5.14e-100	302
MsaG009647	AT2G47900.3	43.490	361	169	6	37	367	52	407	1.06e-99	301
MsaG009647	AT1G76900.2	40.139	431	174	9	18	367	28	455	1.40e-97	297
MsaG009647	AT1G76900.1	40.139	431	174	9	18	367	28	455	1.40e-97	297
MsaG009647	AT1G76900.3	40.139	431	174	9	18	367	28	455	1.40e-97	297
MsaG009647	AT3G06380.1	44.751	362	167	9	31	367	27	380	6.04e-94	286
MsaG009647	AT1G25280.1	42.199	391	162	10	37	367	59	445	7.74e-92	282
MsaG009647	AT1G47270.3	44.538	357	168	9	33	367	40	388	2.11e-90	277
MsaG009647	AT1G47270.1	44.538	357	168	9	33	367	65	413	2.33e-90	278
MsaG009647	AT1G47270.2	44.538	357	168	9	33	367	64	412	3.06e-90	277
MsaG009647	AT5G18680.1	43.164	373	171	10	25	367	28	389	7.30e-88	270
MsaG009647	AT1G43640.1	40.674	386	167	11	35	367	53	429	9.80e-85	264
MsaG009647	AT1G43640.2	40.860	372	158	11	49	367	1	363	4.59e-81	252
MsaG009647	AT3G06380.2	43.151	292	134	8	100	367	5	288	3.04e-67	214
MsaG009647	AT5G18680.2	42.475	299	133	8	98	367	9	297	4.68e-65	209
MsaG009647	AT1G25280.3	39.114	271	102	9	156	367	1	267	1.09e-48	165
MsaG009647	AT1G25280.2	39.114	271	102	9	156	367	1	267	1.09e-48	165
MsaG009647	AT1G61940.2	48.276	87	45	0	40	126	1	87	2.00e-22	95.9
MsaG009647	AT1G61940.1	49.180	61	31	0	40	100	1	61	1.69e-14	72.8

Find 87 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCCACCACTGTGTTGTAAAT+TGG	0.184549	2:+62757088	MsaT009647.1:CDS
ATCATTCGCCTTGGACGTTT+TGG	0.253223	2:-62758015	None:intergenic
TCGCCAGCATTAACAGATAA+AGG	0.277525	2:+62757305	MsaT009647.1:intron
CTCTCCCTCCTGGTTGGCTT+TGG	0.281810	2:-62758269	None:intergenic
ATGATATCCGCAAGAAGTTC+TGG	0.302123	2:-62756412	None:intergenic
CGGGTAGCTCTGCTAGTTGA+TGG	0.323356	2:-62757901	None:intergenic
TGGGGAAGGTCGCGTGGCCC+TGG	0.326133	2:-62757069	None:intergenic
TTTCCCTTCTTGTCTTAAAC+AGG	0.347974	2:+62756567	MsaT009647.1:CDS
GATATCTTCTAGCTGCTAAT+AGG	0.356446	2:-62757334	None:intergenic
AACTAGCTTCGGCACTAAAC+TGG	0.357473	2:+62758398	MsaT009647.1:CDS
GCCATTTGCTTAACTAGCTT+CGG	0.361202	2:+62758387	MsaT009647.1:CDS
CCTACCTCGACGTTGCTAAC+AGG	0.373881	2:-62757958	None:intergenic
TCTTCATCTCCTCTCCCTCC+TGG	0.374907	2:-62758279	None:intergenic
GAACGCATGAAAGGCGGATA+AGG	0.389134	2:-62758364	None:intergenic
AGCTCTGCTAGTTGATGGTT+TGG	0.396144	2:-62757896	None:intergenic
CAAAGCCAACCAGGAGGGAG+AGG	0.411585	2:+62758270	MsaT009647.1:CDS
CGCCAGCATTAACAGATAAA+GGG	0.417908	2:+62757306	MsaT009647.1:intron
GTACTTACTTACATGGTGTA+AGG	0.424832	2:-62757146	None:intergenic
TCTGTTTGCTTGCAAATCGT+CGG	0.458826	2:-62757921	None:intergenic
GTAGGGCCACCTTCTCTTAA+CGG	0.460650	2:+62756535	MsaT009647.1:CDS
CTGTCATATCCTTTCTCTCA+TGG	0.461057	2:-62758206	None:intergenic
CTTGAACTTCCATGAGAGAA+AGG	0.465557	2:+62758197	MsaT009647.1:CDS
TTGATGGTTTGGCACCATCC+TGG	0.472921	2:-62757885	None:intergenic
AACGCATGAAAGGCGGATAA+GGG	0.474762	2:-62758363	None:intergenic
CAAGGAAGTAATGCTTATGT+TGG	0.475540	2:+62757410	MsaT009647.1:CDS
CATCTCCTCTCCCTCCTGGT+TGG	0.480773	2:-62758275	None:intergenic
TATTAGCAGCTAGAAGATAT+CGG	0.489255	2:+62757336	MsaT009647.1:CDS
CTTGTGCCTGCGTTTGCAAA+CGG	0.489375	2:+62756488	MsaT009647.1:CDS
CGTTGCTAACAGGAACTTGA+GGG	0.495414	2:-62757948	None:intergenic
CTGTTTGCTTGCAAATCGTC+GGG	0.497701	2:-62757920	None:intergenic
TTTGTCCTCCGATGCACTAC+CGG	0.499562	2:-62756368	None:intergenic
CTTTCGCATATTGATGAGGC+AGG	0.503626	2:-62758054	None:intergenic
CCAATTTACAACACAGTGGT+GGG	0.506056	2:-62757088	None:intergenic
GCCGAAGCTAGTTAAGCAAA+TGG	0.515952	2:-62758388	None:intergenic
AGAGAGCAAATCATTCGCCT+TGG	0.519881	2:-62758024	None:intergenic
ATCAGTGAAGAACTTTCAGC+TGG	0.522886	2:+62758233	MsaT009647.1:CDS
CAGATACTTCAACAATGCTC+AGG	0.525873	2:+62756318	MsaT009647.1:CDS
AGGACCTGTTTAAGACAAGA+AGG	0.526652	2:-62756571	None:intergenic
ATGCTTATGTTGGCAAGCTA+AGG	0.535171	2:+62757420	MsaT009647.1:CDS
ATTAAACGAGTTGATGTCAC+TGG	0.535809	2:+62756433	MsaT009647.1:CDS
TCCAATTTACAACACAGTGG+TGG	0.539488	2:-62757089	None:intergenic
CATCGGAGGACAAAACTGAT+TGG	0.540142	2:+62756377	MsaT009647.1:CDS
ATATCACACGTGAGGTCGTA+GGG	0.543247	2:+62756518	MsaT009647.1:CDS
CGCAAGAAGTTCTGGAAGCA+TGG	0.545732	2:-62756404	None:intergenic
GCTGTCGTAAATTGTGAAGT+TGG	0.553594	2:-62757863	None:intergenic
GGAACGAGCAATTAGAGTGC+TGG	0.557590	2:+62758172	MsaT009647.1:CDS
GGCAAGATAGAGGTAAAATG+TGG	0.562187	2:-62757124	None:intergenic
CTTTCAGCTGGTTGCCACTG+TGG	0.563933	2:+62758245	MsaT009647.1:CDS
GCAAATGGCGAACGCATGAA+AGG	0.564410	2:-62758373	None:intergenic
CCTGTTAGCAACGTCGAGGT+AGG	0.569841	2:+62757958	MsaT009647.1:CDS
ACTGTGGACCAAAGCCAACC+AGG	0.574474	2:+62758261	MsaT009647.1:CDS
TTTATTCTTCAAGATTGTGT+AGG	0.575970	2:-62758139	None:intergenic
CAGTGGTGGGGAAGGTCGCG+TGG	0.579862	2:-62757075	None:intergenic
TACTTACTTACATGGTGTAA+GGG	0.588591	2:-62757145	None:intergenic
GATATCACACGTGAGGTCGT+AGG	0.603348	2:+62756517	MsaT009647.1:CDS
CACCACCGGTAGTGCATCGG+AGG	0.607308	2:+62756363	MsaT009647.1:CDS
TGACACCACCGGTAGTGCAT+CGG	0.608180	2:+62756360	MsaT009647.1:CDS
CTTCACAATTTACGACAGCC+AGG	0.609339	2:+62757867	MsaT009647.1:CDS
GTGCCTGCGTTTGCAAACGG+TGG	0.610120	2:+62756491	MsaT009647.1:CDS
ACAATTTACGACAGCCAGGA+TGG	0.612721	2:+62757871	MsaT009647.1:CDS
TTACAACACAGTGGTGGGGA+AGG	0.615695	2:-62757083	None:intergenic
ACGTTGCTAACAGGAACTTG+AGG	0.623409	2:-62757949	None:intergenic
ATGGTGTAAGGGCAAGATAG+AGG	0.623484	2:-62757134	None:intergenic
CATGCTTCCAGAACTTCTTG+CGG	0.624235	2:+62756405	MsaT009647.1:CDS
CAATTTACAACACAGTGGTG+GGG	0.625248	2:-62757087	None:intergenic
GGACCTGTTTAAGACAAGAA+GGG	0.625907	2:-62756570	None:intergenic
TGAACTTTCGCATATTGATG+AGG	0.626688	2:-62758058	None:intergenic
GTCCTCCGATGCACTACCGG+TGG	0.634176	2:-62756365	None:intergenic
TGAAGAATAAAGCTCCGATG+TGG	0.636117	2:+62758151	MsaT009647.1:CDS
TCTCCACCGTTTGCAAACGC+AGG	0.641600	2:-62756494	None:intergenic
GCTCAGGCTCTCAATGCTAC+CGG	0.643110	2:+62756334	MsaT009647.1:CDS
GCTACCGGCGATGACACCAC+CGG	0.645253	2:+62756349	MsaT009647.1:CDS
ACTACCGGTGGTGTCATCGC+CGG	0.646189	2:-62756353	None:intergenic
ATCGAGCGACATAACATACT+CGG	0.647174	2:-62757372	None:intergenic
TGGTTGGCTTTGGTCCACAG+TGG	0.652104	2:-62758259	None:intergenic
TCTAATTGCTCGTTCCACAT+CGG	0.654420	2:-62758165	None:intergenic
AAGATAGAGGTAAAATGTGG+AGG	0.660216	2:-62757121	None:intergenic
TGGACCAAAGCCAACCAGGA+GGG	0.665639	2:+62758265	MsaT009647.1:CDS
AATGGCGAACGCATGAAAGG+CGG	0.674797	2:-62758370	None:intergenic
TAAGGGCTGTCTATAGCACA+TGG	0.676456	2:-62758346	None:intergenic
GCGACGACATTTCGACGATG+CGG	0.691215	2:-62756466	None:intergenic
TATTCCAATTTACAACACAG+TGG	0.695058	2:-62757092	None:intergenic
GTGGAGAGATATCACACGTG+AGG	0.702332	2:+62756510	MsaT009647.1:CDS
AGTTCCTGTTAGCAACGTCG+AGG	0.712433	2:+62757954	MsaT009647.1:CDS
TGAGAGAAAGGATATGACAG+TGG	0.718707	2:+62758209	MsaT009647.1:CDS
TTGATGTCACTGGAGAACAA+TGG	0.719375	2:+62756443	MsaT009647.1:CDS
GTGGACCAAAGCCAACCAGG+AGG	0.733661	2:+62758264	MsaT009647.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	62756289	62758431	62756289	ID=MsaG009647
Chr2	mRNA	62756289	62758431	62756289	ID=MsaT009647.1;Parent=MsaG009647
Chr2	exon	62756289	62756588	62756289	ID=MsaT009647.1.exon1;Parent=MsaT009647.1
Chr2	CDS	62756289	62756588	62756289	ID=cds.MsaT009647.1;Parent=MsaT009647.1
Chr2	exon	62757069	62757156	62757069	ID=MsaT009647.1.exon2;Parent=MsaT009647.1
Chr2	CDS	62757069	62757156	62757069	ID=cds.MsaT009647.1;Parent=MsaT009647.1
Chr2	exon	62757312	62757441	62757312	ID=MsaT009647.1.exon3;Parent=MsaT009647.1
Chr2	CDS	62757312	62757441	62757312	ID=cds.MsaT009647.1;Parent=MsaT009647.1
Chr2	exon	62757846	62758431	62757846	ID=MsaT009647.1.exon4;Parent=MsaT009647.1
Chr2	CDS	62757846	62758431	62757846	ID=cds.MsaT009647.1;Parent=MsaT009647.1

Gene Sequence

>MsaT009647.1

ATGAAGCTCTTTCGATCTCTTAAATTCTTCAGATACTTCAACAATGCTCAGGCTCTCAATGCTACCGGCGATGACACCACCGGTAGTGCATCGGAGGACAAAACTGATTGGTCTACCATGCTTCCAGAACTTCTTGCGGATATCATTAAACGAGTTGATGTCACTGGAGAACAATGGCCGCATCGTCGAAATGTCGTCGCTTGTGCCTGCGTTTGCAAACGGTGGAGAGATATCACACGTGAGGTCGTAGGGCCACCTTCTCTTAACGGAAAAATCACTTTCCCTTCTTGTCTTAAACAGCCAGGGCCACGCGACCTTCCCCACCACTGTGTTGTAAATTGGAATAAGAAGACCTCCACATTTTACCTCTATCTTGCCCTTACACCATCATTAACAGATAAAGGGAAGTTCCTATTAGCAGCTAGAAGATATCGGTGTGTTACACATACCGAGTATGTTATGTCGCTCGATGCTGATGACTTTTCACAAGGAAGTAATGCTTATGTTGGCAAGCTAAGCTCAGATTTTCTTGAAGCCAACTTCACAATTTACGACAGCCAGGATGGTGCCAAACCATCAACTAGCAGAGCTACCCGACGATTTGCAAGCAAACAGATAAGCCCTCAAGTTCCTGTTAGCAACGTCGAGGTAGGAAACATCTCCTACAAAAAGTTTAGCCTTTTGAAACCAAAACGTCCAAGGCGAATGATTTGCTCTCTGAAGTCTCCTGCCTCATCAATATGCGAAAGTTCAGACAGCAAGTCTTTCGATCAACATACGATGCACTGTAAAGAACAAGCTACTTCTTCTGCCTACACAATCTTGAAGAATAAAGCTCCGATGTGGAACGAGCAATTAGAGTGCTGGTTCTTGAACTTCCATGAGAGAAAGGATATGACAGTGGCATCAGTGAAGAACTTTCAGCTGGTTGCCACTGTGGACCAAAGCCAACCAGGAGGGAGAGGAGATGAAGAAACAGTTCTTCTCCAGTTTTGTAAAGTAGGGGGTGATACTTTCACCATGTGCTATAGACAGCCCTTATCCGCCTTTCATGCGTTCGCCATTTGCTTAACTAGCTTCGGCACTAAACTGGCTTGTCAGTAA

Protein sequence

>MsaT009647.1

MKLFRSLKFFRYFNNAQALNATGDDTTGSASEDKTDWSTMLPELLADIIKRVDVTGEQWPHRRNVVACACVCKRWRDITREVVGPPSLNGKITFPSCLKQPGPRDLPHHCVVNWNKKTSTFYLYLALTPSLTDKGKFLLAARRYRCVTHTEYVMSLDADDFSQGSNAYVGKLSSDFLEANFTIYDSQDGAKPSTSRATRRFASKQISPQVPVSNVEVGNISYKKFSLLKPKRPRRMICSLKSPASSICESSDSKSFDQHTMHCKEQATSSAYTILKNKAPMWNEQLECWFLNFHERKDMTVASVKNFQLVATVDQSQPGGRGDEETVLLQFCKVGGDTFTMCYRQPLSAFHAFAICLTSFGTKLACQ*