Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG009693 | XP_006591825.1 | 100.000 | 141 | 0 | 0 | 1 | 141 | 1 | 141 | 8.48e-96 | 291 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG009693 | sp|Q9FZ48|UBC36_ARATH | 98.582 | 141 | 2 | 0 | 1 | 141 | 1 | 141 | 3.19e-97 | 288 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG009693 | tr|I1LV61|I1LV61_SOYBN | 100.000 | 141 | 0 | 0 | 1 | 141 | 1 | 141 | 4.15e-96 | 291 |
Gene ID | Type | Classification |
---|---|---|
MsaG009693 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG009693 | MtrunA17_Chr2g0316201 | 99.291 | 141 | 1 | 0 | 1 | 141 | 1 | 141 | 5.56e-99 | 289 |
MsaG009693 | MtrunA17_Chr2g0316211 | 95.833 | 144 | 6 | 0 | 1 | 144 | 1 | 144 | 7.98e-97 | 284 |
MsaG009693 | MtrunA17_Chr5g0432831 | 50.000 | 130 | 65 | 0 | 8 | 137 | 4 | 133 | 7.31e-40 | 138 |
MsaG009693 | MtrunA17_Chr3g0108261 | 49.231 | 130 | 66 | 0 | 8 | 137 | 4 | 133 | 3.04e-39 | 136 |
MsaG009693 | MtrunA17_Chr7g0275361 | 49.231 | 130 | 66 | 0 | 8 | 137 | 4 | 133 | 4.19e-39 | 135 |
MsaG009693 | MtrunA17_Chr1g0154011 | 48.462 | 130 | 67 | 0 | 8 | 137 | 4 | 133 | 5.52e-39 | 135 |
MsaG009693 | MtrunA17_Chr8g0369311 | 50.000 | 130 | 65 | 0 | 8 | 137 | 60 | 189 | 9.76e-39 | 137 |
MsaG009693 | MtrunA17_Chr1g0203051 | 36.957 | 184 | 112 | 1 | 167 | 350 | 50 | 229 | 3.68e-38 | 144 |
MsaG009693 | MtrunA17_Chr4g0037011 | 47.761 | 134 | 70 | 0 | 8 | 141 | 4 | 137 | 3.74e-38 | 133 |
MsaG009693 | MtrunA17_Chr8g0362321 | 41.538 | 130 | 76 | 0 | 8 | 137 | 7 | 136 | 5.79e-35 | 125 |
MsaG009693 | MtrunA17_Chr4g0060351 | 41.538 | 130 | 76 | 0 | 8 | 137 | 7 | 136 | 5.98e-35 | 125 |
MsaG009693 | MtrunA17_Chr1g0171741 | 37.356 | 174 | 107 | 2 | 151 | 323 | 83 | 255 | 9.06e-35 | 128 |
MsaG009693 | MtrunA17_Chr3g0131871 | 50.420 | 119 | 58 | 1 | 24 | 141 | 22 | 140 | 2.43e-34 | 125 |
MsaG009693 | MtrunA17_Chr8g0389811 | 38.650 | 163 | 95 | 3 | 152 | 311 | 35 | 195 | 6.79e-33 | 121 |
MsaG009693 | MtrunA17_Chr4g0038891 | 46.094 | 128 | 69 | 0 | 8 | 135 | 35 | 162 | 4.79e-32 | 118 |
MsaG009693 | MtrunA17_Chr5g0396451 | 46.094 | 128 | 69 | 0 | 8 | 135 | 35 | 162 | 6.35e-32 | 118 |
MsaG009693 | MtrunA17_Chr3g0139901 | 44.538 | 119 | 63 | 2 | 9 | 124 | 7 | 125 | 5.85e-29 | 109 |
MsaG009693 | MtrunA17_Chr8g0378601 | 40.000 | 130 | 78 | 0 | 8 | 137 | 25 | 154 | 2.04e-28 | 108 |
MsaG009693 | MtrunA17_Chr1g0199951 | 43.284 | 134 | 75 | 1 | 3 | 135 | 39 | 172 | 2.82e-28 | 108 |
MsaG009693 | MtrunA17_Chr2g0331371 | 44.355 | 124 | 69 | 0 | 182 | 305 | 37 | 160 | 2.02e-27 | 107 |
MsaG009693 | MtrunA17_Chr2g0287651 | 36.250 | 160 | 102 | 0 | 191 | 350 | 66 | 225 | 1.61e-26 | 110 |
MsaG009693 | MtrunA17_Chr7g0254701 | 39.286 | 140 | 81 | 1 | 2 | 137 | 3 | 142 | 5.86e-25 | 102 |
MsaG009693 | MtrunA17_Chr8g0348701 | 37.008 | 127 | 75 | 3 | 32 | 153 | 27 | 153 | 5.39e-23 | 94.7 |
MsaG009693 | MtrunA17_Chr8g0387131 | 33.333 | 156 | 96 | 4 | 32 | 179 | 27 | 182 | 1.69e-21 | 90.5 |
MsaG009693 | MtrunA17_Chr4g0031181 | 33.588 | 131 | 73 | 2 | 21 | 137 | 20 | 150 | 3.27e-21 | 89.4 |
MsaG009693 | MtrunA17_Chr6g0473421 | 36.719 | 128 | 74 | 1 | 155 | 275 | 3 | 130 | 4.26e-21 | 88.6 |
MsaG009693 | MtrunA17_Chr4g0059291 | 43.434 | 99 | 54 | 2 | 32 | 128 | 27 | 125 | 4.56e-21 | 89.4 |
MsaG009693 | MtrunA17_Chr2g0328001 | 34.127 | 126 | 69 | 2 | 21 | 132 | 20 | 145 | 6.01e-20 | 85.9 |
MsaG009693 | MtrunA17_Chr5g0403591 | 37.097 | 124 | 76 | 2 | 31 | 154 | 55 | 176 | 2.33e-19 | 84.7 |
MsaG009693 | MtrunA17_Chr4g0053191 | 37.374 | 99 | 60 | 1 | 26 | 122 | 30 | 128 | 3.97e-17 | 77.8 |
MsaG009693 | MtrunA17_Chr1g0172931 | 36.283 | 113 | 71 | 1 | 170 | 282 | 47 | 158 | 4.46e-17 | 77.8 |
MsaG009693 | MtrunA17_Chr5g0401831 | 36.957 | 92 | 56 | 1 | 33 | 122 | 37 | 128 | 3.39e-16 | 75.1 |
MsaG009693 | MtrunA17_Chr8g0372391 | 37.374 | 99 | 60 | 2 | 9 | 106 | 19 | 116 | 1.03e-13 | 68.2 |
MsaG009693 | MtrunA17_Chr5g0404931 | 39.474 | 76 | 45 | 1 | 32 | 106 | 41 | 116 | 4.35e-12 | 63.5 |
MsaG009693 | MtrunA17_Chr1g0186291 | 37.500 | 64 | 39 | 1 | 45 | 107 | 28 | 91 | 1.22e-11 | 62.0 |
MsaG009693 | MtrunA17_Chr5g0448761 | 32.000 | 150 | 100 | 2 | 202 | 349 | 62 | 211 | 1.34e-11 | 65.9 |
MsaG009693 | MtrunA17_Chr4g0068301 | 30.579 | 121 | 74 | 4 | 8 | 123 | 13 | 128 | 9.83e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG009693 | AT1G16890.2 | 98.582 | 141 | 2 | 0 | 1 | 141 | 1 | 141 | 3.24e-98 | 288 |
MsaG009693 | AT1G78870.2 | 98.582 | 141 | 2 | 0 | 1 | 141 | 1 | 141 | 3.86e-98 | 287 |
MsaG009693 | AT1G16890.3 | 92.000 | 150 | 3 | 1 | 1 | 141 | 1 | 150 | 2.29e-94 | 278 |
MsaG009693 | AT1G16890.1 | 99.074 | 108 | 1 | 0 | 34 | 141 | 1 | 108 | 1.19e-73 | 224 |
MsaG009693 | AT1G78870.4 | 98.148 | 108 | 2 | 0 | 34 | 141 | 1 | 108 | 4.69e-73 | 222 |
MsaG009693 | AT1G78870.3 | 99.074 | 108 | 1 | 0 | 1 | 108 | 1 | 108 | 5.77e-73 | 222 |
MsaG009693 | AT1G78870.1 | 97.248 | 109 | 2 | 1 | 34 | 141 | 1 | 109 | 3.08e-71 | 218 |
MsaG009693 | AT2G16740.1 | 50.769 | 130 | 64 | 0 | 8 | 137 | 4 | 133 | 3.13e-40 | 139 |
MsaG009693 | AT5G41700.5 | 50.000 | 130 | 65 | 0 | 8 | 137 | 4 | 133 | 4.54e-40 | 139 |
MsaG009693 | AT5G41700.2 | 50.000 | 130 | 65 | 0 | 8 | 137 | 4 | 133 | 4.54e-40 | 139 |
MsaG009693 | AT5G41700.1 | 50.000 | 130 | 65 | 0 | 8 | 137 | 4 | 133 | 4.54e-40 | 139 |
MsaG009693 | AT3G08690.2 | 49.254 | 134 | 68 | 0 | 8 | 141 | 4 | 137 | 6.32e-40 | 138 |
MsaG009693 | AT3G08690.1 | 49.254 | 134 | 68 | 0 | 8 | 141 | 4 | 137 | 6.32e-40 | 138 |
MsaG009693 | AT1G64230.2 | 48.507 | 134 | 69 | 0 | 8 | 141 | 4 | 137 | 9.88e-40 | 138 |
MsaG009693 | AT1G64230.1 | 48.507 | 134 | 69 | 0 | 8 | 141 | 4 | 137 | 9.88e-40 | 138 |
MsaG009693 | AT5G53300.2 | 50.000 | 128 | 64 | 0 | 8 | 135 | 4 | 131 | 1.29e-39 | 137 |
MsaG009693 | AT5G53300.4 | 50.000 | 128 | 64 | 0 | 8 | 135 | 4 | 131 | 1.29e-39 | 137 |
MsaG009693 | AT5G53300.1 | 50.000 | 128 | 64 | 0 | 8 | 135 | 4 | 131 | 1.29e-39 | 137 |
MsaG009693 | AT4G27960.1 | 50.000 | 128 | 64 | 0 | 8 | 135 | 4 | 131 | 2.22e-39 | 137 |
MsaG009693 | AT4G27960.2 | 50.000 | 128 | 64 | 0 | 8 | 135 | 34 | 161 | 3.97e-39 | 137 |
MsaG009693 | AT5G41700.4 | 49.618 | 131 | 65 | 1 | 8 | 137 | 4 | 134 | 4.25e-38 | 134 |
MsaG009693 | AT5G56150.1 | 48.507 | 134 | 69 | 0 | 8 | 141 | 4 | 137 | 6.45e-38 | 133 |
MsaG009693 | AT1G64230.3 | 45.455 | 143 | 69 | 1 | 8 | 141 | 4 | 146 | 5.34e-37 | 131 |
MsaG009693 | AT5G62540.1 | 43.077 | 130 | 74 | 0 | 8 | 137 | 7 | 136 | 6.86e-35 | 125 |
MsaG009693 | AT1G14400.1 | 40.769 | 130 | 77 | 0 | 8 | 137 | 7 | 136 | 2.37e-34 | 124 |
MsaG009693 | AT1G14400.2 | 40.769 | 130 | 77 | 0 | 8 | 137 | 7 | 136 | 2.37e-34 | 124 |
MsaG009693 | AT1G64230.5 | 50.442 | 113 | 56 | 0 | 29 | 141 | 67 | 179 | 3.45e-34 | 125 |
MsaG009693 | AT1G64230.4 | 50.442 | 113 | 56 | 0 | 29 | 141 | 67 | 179 | 3.45e-34 | 125 |
MsaG009693 | AT5G50870.1 | 46.667 | 135 | 70 | 2 | 9 | 141 | 6 | 140 | 3.76e-34 | 124 |
MsaG009693 | AT2G02760.1 | 40.769 | 130 | 77 | 0 | 8 | 137 | 7 | 136 | 3.82e-34 | 123 |
MsaG009693 | AT2G02760.2 | 40.769 | 130 | 77 | 0 | 8 | 137 | 7 | 136 | 3.82e-34 | 123 |
MsaG009693 | AT2G02760.4 | 40.769 | 130 | 77 | 0 | 8 | 137 | 7 | 136 | 3.82e-34 | 123 |
MsaG009693 | AT2G02760.3 | 40.769 | 130 | 77 | 0 | 8 | 137 | 7 | 136 | 3.82e-34 | 123 |
MsaG009693 | AT3G08700.2 | 45.185 | 135 | 73 | 1 | 8 | 141 | 4 | 138 | 9.14e-34 | 122 |
MsaG009693 | AT3G08700.1 | 45.185 | 135 | 73 | 1 | 8 | 141 | 4 | 138 | 9.14e-34 | 122 |
MsaG009693 | AT5G50870.2 | 48.387 | 124 | 62 | 2 | 9 | 130 | 6 | 129 | 3.09e-33 | 122 |
MsaG009693 | AT3G20060.1 | 44.531 | 128 | 71 | 0 | 8 | 135 | 39 | 166 | 9.48e-32 | 118 |
MsaG009693 | AT3G20060.2 | 47.788 | 113 | 59 | 0 | 23 | 135 | 9 | 121 | 5.30e-31 | 114 |
MsaG009693 | AT5G53300.3 | 48.485 | 99 | 51 | 0 | 8 | 106 | 4 | 102 | 6.75e-30 | 110 |
MsaG009693 | AT5G25760.1 | 46.218 | 119 | 61 | 2 | 9 | 124 | 7 | 125 | 1.45e-29 | 111 |
MsaG009693 | AT5G25760.2 | 46.218 | 119 | 61 | 2 | 9 | 124 | 7 | 125 | 1.45e-29 | 111 |
MsaG009693 | AT5G41700.3 | 48.077 | 104 | 54 | 0 | 8 | 111 | 4 | 107 | 3.35e-29 | 110 |
MsaG009693 | AT5G56150.2 | 48.000 | 100 | 52 | 0 | 8 | 107 | 4 | 103 | 1.28e-28 | 107 |
MsaG009693 | AT3G13550.1 | 41.803 | 122 | 71 | 0 | 8 | 129 | 39 | 160 | 3.93e-28 | 108 |
MsaG009693 | AT1G50490.1 | 44.531 | 128 | 71 | 0 | 8 | 135 | 38 | 165 | 7.96e-28 | 107 |
MsaG009693 | AT3G13550.2 | 42.857 | 112 | 64 | 0 | 8 | 119 | 39 | 150 | 3.22e-27 | 105 |
MsaG009693 | AT1G36340.2 | 45.669 | 127 | 68 | 1 | 8 | 134 | 11 | 136 | 3.74e-27 | 105 |
MsaG009693 | AT1G36340.1 | 45.669 | 127 | 68 | 1 | 8 | 134 | 11 | 136 | 3.74e-27 | 105 |
MsaG009693 | AT3G24515.1 | 44.366 | 142 | 66 | 3 | 6 | 134 | 7 | 148 | 3.95e-26 | 108 |
MsaG009693 | AT3G24515.3 | 51.020 | 98 | 44 | 1 | 41 | 134 | 76 | 173 | 5.88e-24 | 102 |
MsaG009693 | AT5G05080.2 | 37.879 | 132 | 78 | 1 | 2 | 129 | 3 | 134 | 1.03e-23 | 98.6 |
MsaG009693 | AT5G05080.3 | 37.879 | 132 | 78 | 1 | 2 | 129 | 3 | 134 | 1.03e-23 | 98.6 |
MsaG009693 | AT5G05080.1 | 37.879 | 132 | 78 | 1 | 2 | 129 | 3 | 134 | 1.03e-23 | 98.6 |
MsaG009693 | AT5G05080.4 | 37.879 | 132 | 78 | 1 | 2 | 129 | 3 | 134 | 1.03e-23 | 98.6 |
MsaG009693 | AT3G55380.1 | 33.113 | 151 | 87 | 2 | 1 | 137 | 1 | 151 | 2.71e-22 | 92.4 |
MsaG009693 | AT1G63800.2 | 45.455 | 99 | 52 | 2 | 32 | 128 | 12 | 110 | 4.31e-22 | 92.0 |
MsaG009693 | AT1G63800.1 | 45.455 | 99 | 52 | 2 | 32 | 128 | 27 | 125 | 8.18e-22 | 91.7 |
MsaG009693 | AT5G41340.1 | 45.455 | 99 | 52 | 2 | 32 | 128 | 27 | 125 | 2.16e-21 | 90.5 |
MsaG009693 | AT2G46030.4 | 44.444 | 99 | 53 | 2 | 32 | 128 | 30 | 128 | 4.85e-21 | 89.7 |
MsaG009693 | AT2G46030.2 | 44.444 | 99 | 53 | 2 | 32 | 128 | 30 | 128 | 4.85e-21 | 89.7 |
MsaG009693 | AT2G46030.5 | 44.444 | 99 | 53 | 2 | 32 | 128 | 27 | 125 | 6.32e-21 | 89.4 |
MsaG009693 | AT2G46030.1 | 44.444 | 99 | 53 | 2 | 32 | 128 | 27 | 125 | 6.32e-21 | 89.4 |
MsaG009693 | AT5G59300.1 | 33.588 | 131 | 73 | 2 | 21 | 137 | 20 | 150 | 1.67e-20 | 87.8 |
MsaG009693 | AT3G46460.1 | 34.351 | 131 | 72 | 2 | 21 | 137 | 20 | 150 | 1.95e-20 | 87.4 |
MsaG009693 | AT2G46030.3 | 44.444 | 99 | 53 | 2 | 32 | 128 | 99 | 197 | 2.01e-20 | 89.7 |
MsaG009693 | AT4G36800.2 | 34.247 | 146 | 94 | 2 | 9 | 154 | 34 | 177 | 1.49e-19 | 85.5 |
MsaG009693 | AT4G36800.1 | 34.247 | 146 | 94 | 2 | 9 | 154 | 34 | 177 | 1.49e-19 | 85.5 |
MsaG009693 | AT5G41340.2 | 46.341 | 82 | 42 | 2 | 49 | 128 | 9 | 90 | 4.67e-18 | 80.5 |
MsaG009693 | AT2G18600.1 | 35.714 | 126 | 80 | 1 | 9 | 134 | 35 | 159 | 6.82e-18 | 80.9 |
MsaG009693 | AT2G18600.2 | 35.714 | 126 | 80 | 1 | 9 | 134 | 35 | 159 | 6.82e-18 | 80.9 |
MsaG009693 | AT2G32790.1 | 47.368 | 95 | 48 | 1 | 29 | 123 | 54 | 146 | 7.75e-17 | 77.8 |
MsaG009693 | AT3G57870.1 | 38.043 | 92 | 55 | 1 | 33 | 122 | 38 | 129 | 9.82e-17 | 77.0 |
MsaG009693 | AT3G55380.2 | 27.568 | 185 | 86 | 3 | 1 | 137 | 1 | 185 | 2.52e-16 | 77.0 |
MsaG009693 | AT3G46460.3 | 33.663 | 101 | 54 | 1 | 50 | 137 | 8 | 108 | 6.48e-16 | 73.9 |
MsaG009693 | AT3G46460.2 | 33.663 | 101 | 54 | 1 | 50 | 137 | 8 | 108 | 6.48e-16 | 73.9 |
MsaG009693 | AT5G28530.4 | 33.333 | 123 | 79 | 2 | 206 | 326 | 61 | 182 | 2.02e-14 | 74.7 |
MsaG009693 | AT5G28530.5 | 33.333 | 123 | 79 | 2 | 206 | 326 | 61 | 182 | 2.25e-14 | 74.7 |
MsaG009693 | AT5G28530.3 | 33.333 | 123 | 79 | 2 | 206 | 326 | 61 | 182 | 2.74e-14 | 74.3 |
MsaG009693 | AT5G28530.2 | 33.333 | 123 | 79 | 2 | 206 | 326 | 61 | 182 | 2.74e-14 | 74.3 |
MsaG009693 | AT5G28530.1 | 33.333 | 123 | 79 | 2 | 206 | 326 | 61 | 182 | 2.75e-14 | 74.3 |
MsaG009693 | AT1G10240.2 | 33.544 | 158 | 94 | 4 | 192 | 339 | 34 | 190 | 6.37e-14 | 73.6 |
MsaG009693 | AT1G10240.1 | 33.544 | 158 | 94 | 4 | 192 | 339 | 34 | 190 | 6.37e-14 | 73.6 |
MsaG009693 | AT1G45050.1 | 39.474 | 76 | 45 | 1 | 32 | 106 | 41 | 116 | 6.55e-13 | 66.2 |
MsaG009693 | AT1G75440.1 | 34.343 | 99 | 63 | 2 | 9 | 106 | 19 | 116 | 2.92e-12 | 64.7 |
MsaG009693 | AT5G42990.1 | 34.343 | 99 | 63 | 2 | 9 | 106 | 19 | 116 | 1.31e-11 | 62.8 |
MsaG009693 | AT4G36410.1 | 34.343 | 99 | 63 | 2 | 9 | 106 | 19 | 116 | 1.75e-11 | 62.4 |
Find 88 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGGAGGCAATCTATGTTTAT+TGG | 0.295916 | 2:-63472567 | None:intergenic |
TACCAGTTCTACTACTGGTT+TGG | 0.296108 | 2:+63472669 | MsaT009693.1:CDS |
ATATCAATCTTCAAAATATC+AGG | 0.302921 | 2:-63472588 | None:intergenic |
GGTGCAATGGCAAACGCTTC+TGG | 0.313866 | 2:+63473053 | MsaT009693.1:CDS |
GAATGAGTTGGACGAAGAAT+TGG | 0.337521 | 2:+63472494 | MsaT009693.1:CDS |
GAAGGTTTATGCCATGGAAT+TGG | 0.341274 | 2:+63472516 | MsaT009693.1:CDS |
ATTGGTTCCAAATCACCTTC+GGG | 0.363893 | 2:-63472549 | None:intergenic |
TTCTCAGAAAGAGGATCATC+TGG | 0.366062 | 2:-63469848 | None:intergenic |
TATTGGTTCCAAATCACCTT+CGG | 0.372238 | 2:-63472550 | None:intergenic |
GCAGCCATTGGATATTCTTC+AGG | 0.381683 | 2:-63462346 | None:intergenic |
GTACCTCTCAACTTCTTTGA+AGG | 0.395532 | 2:-63472622 | None:intergenic |
ATTGCACCGTACATCTGATA+TGG | 0.395766 | 2:-63473038 | None:intergenic |
GAAGGAGATGCACTAATTCC+AGG | 0.396308 | 2:-63460483 | None:intergenic |
ACCAGTTCTACTACTGGTTT+GGG | 0.402961 | 2:+63472670 | MsaT009693.1:CDS |
AATCGGATGTACAGGATATT+CGG | 0.403668 | 2:+63472991 | MsaT009693.1:CDS |
TACTGGTTTGGGAGAAGAAA+AGG | 0.407808 | 2:+63472681 | MsaT009693.1:CDS |
TTCATAAGAGTCTGATGATA+AGG | 0.425264 | 2:+63472712 | MsaT009693.1:CDS |
GCATAGAAAATTGTCAAAAT+CGG | 0.431000 | 2:+63472974 | MsaT009693.1:CDS |
TGGAATTAGTGCATCTCCTT+CGG | 0.436860 | 2:+63460485 | MsaT009693.1:CDS |
AAGCATACCTTGTCAATGTT+AGG | 0.438243 | 2:-63469152 | None:intergenic |
GTGAACACACATAGGTTTGT+TGG | 0.440149 | 2:-63472755 | None:intergenic |
CTGAGAACATTGCTAAGCAT+TGG | 0.441903 | 2:+63469864 | MsaT009693.1:CDS |
GAAATTCGATGCAGCTTGGC+AGG | 0.451169 | 2:+63469231 | MsaT009693.1:intron |
GAAAGAGGATCATCTGGGTT+TGG | 0.452444 | 2:-63469842 | None:intergenic |
TATTTCAATGTGATGATCCT+TGG | 0.456529 | 2:+63460522 | MsaT009693.1:CDS |
TTGCCTACCAGTTCTACTAC+TGG | 0.461268 | 2:+63472664 | MsaT009693.1:CDS |
TCCCAAACCAGTAGTAGAAC+TGG | 0.465930 | 2:-63472671 | None:intergenic |
ATTGTCAAAATCGGATGTAC+AGG | 0.469410 | 2:+63472983 | MsaT009693.1:CDS |
GGGAGTTGTTTCCAATTCCA+TGG | 0.472945 | 2:-63472527 | None:intergenic |
ATCTTGTTTCATTTCTAGCC+CGG | 0.475579 | 2:-63472827 | None:intergenic |
CAGCGTTTGCTCAGTGAGCC+AGG | 0.478486 | 2:+63459810 | MsaT009693.1:CDS |
GAGGCTGAGGCTGTTGAGAC+AGG | 0.486241 | 2:+63469896 | MsaT009693.1:CDS |
AGTACCTTTGGAGCAGCCAT+TGG | 0.489227 | 2:-63462358 | None:intergenic |
GTGGATTAACACCCGAGAAA+AGG | 0.491667 | 2:+63472799 | MsaT009693.1:CDS |
ACCTATGTGTGTTCACGTGC+AGG | 0.495433 | 2:+63472762 | MsaT009693.1:CDS |
CTTCATAAGGAGACTGAGTC+GGG | 0.500348 | 2:-63460545 | None:intergenic |
GATAAGTGGAGTCCCGCCCT+TGG | 0.500825 | 2:+63469275 | MsaT009693.1:CDS |
ATAAGTGGAGTCCCGCCCTT+GGG | 0.505299 | 2:+63469276 | MsaT009693.1:CDS |
TTGATATTCTGAAAGATAAG+TGG | 0.507902 | 2:+63469261 | MsaT009693.1:CDS |
GGGTCATCACAACCTTCATA+AGG | 0.513453 | 2:-63460558 | None:intergenic |
CCTTGATGATTCTTCGAGGA+AGG | 0.515767 | 2:-63459374 | None:intergenic |
AACTGTGACATACCATCGCC+TGG | 0.526121 | 2:-63472892 | None:intergenic |
ATATCCAATGGCTGCTCCAA+AGG | 0.528645 | 2:+63462354 | MsaT009693.1:CDS |
TTAGCAATGTTCTCAGAAAG+AGG | 0.528946 | 2:-63469857 | None:intergenic |
ACTCATTCTCTCCCACATCA+TGG | 0.547971 | 2:-63472479 | None:intergenic |
CGAACCTTGATGATTCTTCG+AGG | 0.552069 | 2:-63459378 | None:intergenic |
CACAACCATGTGCTGTTGGA+TGG | 0.560550 | 2:+63472927 | MsaT009693.1:CDS |
TCTGATGATAAGGAATCGTA+CGG | 0.560905 | 2:+63472722 | MsaT009693.1:CDS |
GAATTGGAAGGTTTATGCCA+TGG | 0.565086 | 2:+63472510 | MsaT009693.1:CDS |
AAAGTACAGTGCGAATCCCA+AGG | 0.566065 | 2:-63469292 | None:intergenic |
CCGACTCAGTCTCCTTATGA+AGG | 0.566873 | 2:+63460546 | MsaT009693.1:CDS |
GAAGTTGAGAGGTACAACTT+TGG | 0.568382 | 2:+63472630 | MsaT009693.1:CDS |
TTGGAAATCTAACGAGGCTG+AGG | 0.570066 | 2:+63469883 | MsaT009693.1:CDS |
CACCCGAGAAAAGGAAACGC+CGG | 0.572335 | 2:+63472808 | MsaT009693.1:CDS |
TTTGCCTGAAGAATATCCAA+TGG | 0.577448 | 2:+63462342 | MsaT009693.1:CDS |
ACCCGAGAAAAGGAAACGCC+GGG | 0.581885 | 2:+63472809 | MsaT009693.1:CDS |
AAGGAGACTGAGTCGGGCCA+AGG | 0.583368 | 2:-63460539 | None:intergenic |
ATATCAGATGTACGGTGCAA+TGG | 0.583654 | 2:+63473040 | MsaT009693.1:CDS |
TTTCCTTCAAAGAAGTTGAG+AGG | 0.586277 | 2:+63472619 | MsaT009693.1:CDS |
TATCAATCTTCAAAATATCA+GGG | 0.588637 | 2:-63472587 | None:intergenic |
ATTCGGAGTAATAACAACAT+TGG | 0.594858 | 2:+63473008 | MsaT009693.1:CDS |
CCTTCCTCGAAGAATCATCA+AGG | 0.595281 | 2:+63459374 | MsaT009693.1:CDS |
ATAAGACCATATCAGATGTA+CGG | 0.603816 | 2:+63473032 | MsaT009693.1:CDS |
ACAGTGCGAATCCCAAGGGC+GGG | 0.606986 | 2:-63469287 | None:intergenic |
GCAATGGCAAACGCTTCTGG+TGG | 0.608415 | 2:+63473056 | MsaT009693.1:CDS |
TGGTCACAACCATGTGCTGT+TGG | 0.609196 | 2:+63472923 | MsaT009693.1:CDS |
CCTTCATAAGGAGACTGAGT+CGG | 0.615839 | 2:-63460546 | None:intergenic |
CTGATGATAAGGAATCGTAC+GGG | 0.620525 | 2:+63472723 | MsaT009693.1:CDS |
TGATGTGGGAGAGAATGAGT+TGG | 0.623184 | 2:+63472482 | MsaT009693.1:CDS |
TCTCAGAAAGAGGATCATCT+GGG | 0.624579 | 2:-63469847 | None:intergenic |
TCATTCCATCCAACAGCACA+TGG | 0.625026 | 2:-63472932 | None:intergenic |
TTGGTTCCAAATCACCTTCG+GGG | 0.629437 | 2:-63472548 | None:intergenic |
CTCCTTCGGAAGACAATATG+CGG | 0.632931 | 2:+63460499 | MsaT009693.1:CDS |
TCCTGCACGTGAACACACAT+AGG | 0.636134 | 2:-63472763 | None:intergenic |
TACAGTGCGAATCCCAAGGG+CGG | 0.636943 | 2:-63469288 | None:intergenic |
TGGTTCCAAATCACCTTCGG+GGG | 0.641189 | 2:-63472547 | None:intergenic |
TACCGCATATTGTCTTCCGA+AGG | 0.641555 | 2:-63460501 | None:intergenic |
TCGACATTCACACCAGGCGA+TGG | 0.642528 | 2:+63472880 | MsaT009693.1:CDS |
GAGTTGGACGAAGAATTGGA+AGG | 0.645890 | 2:+63472498 | MsaT009693.1:CDS |
AAGTACAGTGCGAATCCCAA+GGG | 0.665541 | 2:-63469291 | None:intergenic |
GCAGGATTTAGAGAAGATCG+TGG | 0.673352 | 2:+63472780 | MsaT009693.1:CDS |
TACATGTCGACATTCACACC+AGG | 0.674089 | 2:+63472874 | MsaT009693.1:CDS |
AAACCAGTAGTAGAACTGGT+AGG | 0.688245 | 2:-63472667 | None:intergenic |
ATATCATCCTAACATTGACA+AGG | 0.690087 | 2:+63469145 | MsaT009693.1:CDS |
CTGTTGGATGGAATGATGTG+CGG | 0.697681 | 2:+63472939 | MsaT009693.1:CDS |
GCTAGAAATGAAACAAGATG+CGG | 0.713022 | 2:+63472831 | MsaT009693.1:CDS |
CAATCTTCAAAATATCAGGG+AGG | 0.740535 | 2:-63472584 | None:intergenic |
TAAGCATTGGAAATCTAACG+AGG | 0.750907 | 2:+63469877 | MsaT009693.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 63459360 | 63473088 | 63459360 | ID=MsaG009693 |
Chr2 | mRNA | 63459360 | 63473088 | 63459360 | ID=MsaT009693.1;Parent=MsaG009693 |
Chr2 | exon | 63459360 | 63459395 | 63459360 | ID=MsaT009693.1.exon1;Parent=MsaT009693.1 |
Chr2 | CDS | 63459360 | 63459395 | 63459360 | ID=cds.MsaT009693.1;Parent=MsaT009693.1 |
Chr2 | exon | 63459804 | 63459831 | 63459804 | ID=MsaT009693.1.exon2;Parent=MsaT009693.1 |
Chr2 | CDS | 63459804 | 63459831 | 63459804 | ID=cds.MsaT009693.1;Parent=MsaT009693.1 |
Chr2 | exon | 63460481 | 63460567 | 63460481 | ID=MsaT009693.1.exon3;Parent=MsaT009693.1 |
Chr2 | CDS | 63460481 | 63460567 | 63460481 | ID=cds.MsaT009693.1;Parent=MsaT009693.1 |
Chr2 | exon | 63462317 | 63462375 | 63462317 | ID=MsaT009693.1.exon4;Parent=MsaT009693.1 |
Chr2 | CDS | 63462317 | 63462375 | 63462317 | ID=cds.MsaT009693.1;Parent=MsaT009693.1 |
Chr2 | exon | 63469125 | 63469166 | 63469125 | ID=MsaT009693.1.exon5;Parent=MsaT009693.1 |
Chr2 | CDS | 63469125 | 63469166 | 63469125 | ID=cds.MsaT009693.1;Parent=MsaT009693.1 |
Chr2 | exon | 63469245 | 63469318 | 63469245 | ID=MsaT009693.1.exon6;Parent=MsaT009693.1 |
Chr2 | CDS | 63469245 | 63469318 | 63469245 | ID=cds.MsaT009693.1;Parent=MsaT009693.1 |
Chr2 | exon | 63469820 | 63469917 | 63469820 | ID=MsaT009693.1.exon7;Parent=MsaT009693.1 |
Chr2 | CDS | 63469820 | 63469917 | 63469820 | ID=cds.MsaT009693.1;Parent=MsaT009693.1 |
Chr2 | exon | 63472457 | 63473088 | 63472457 | ID=MsaT009693.1.exon8;Parent=MsaT009693.1 |
Chr2 | CDS | 63472457 | 63473088 | 63472457 | ID=cds.MsaT009693.1;Parent=MsaT009693.1 |
Gene Sequence |
Protein sequence |