AlfalfaGEDB | MsaG009708

M. sativa ssp. caerulea / MsaG009708

KEGG: -
GO: GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0005911 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009506 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016458 GO:0016569 GO:0016570 GO:0016573 GO:0016581 GO:0016740 GO:0016746 GO:0016747 GO:0017053 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030054 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0032993 GO:0034212 GO:0034641 GO:0036211 GO:0042393 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043966 GO:0043971 GO:0043972 GO:0044030 GO:0044154 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0055044 GO:0060255 GO:0061733 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071704 GO:0071840 GO:0072553 GO:0080090 GO:0080188 GO:0090304 GO:0090545 GO:0090568 GO:0097159 GO:0099172 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141
PFAM: PF16135.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009708	XP_013464591.1	94.083	1352	37	3	1	1309	1	1352	0.0	2619

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009708	sp\|F4IXE7\|IDM1_ARATH	48.734	632	279	10	571	1179	472	1081	0.0	576
MsaG009708	sp\|F4IXE7\|IDM1_ARATH	30.769	403	212	9	1	376	7	369	2.31e-32	140

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009708	tr\|A0A072VAI1\|A0A072VAI1_MEDTR	94.083	1352	37	3	1	1309	1	1352	0.0	2619

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TFs/TRs:

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Gene ID	Type	Classification
MsaG009708	TR	PHD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009708	MtrunA17_Chr2g0316251	94.083	1352	37	3	1	1309	1	1352	0.0	2619
MsaG009708	MtrunA17_Chr1g0205451	38.849	556	293	11	709	1240	579	1111	4.57e-110	382
MsaG009708	MtrunA17_Chr1g0185491	39.052	443	239	4	708	1123	782	1220	9.67e-95	335
MsaG009708	MtrunA17_Chr5g0430361	34.739	498	279	14	661	1123	571	1057	8.98e-78	280
MsaG009708	MtrunA17_Chr3g0105291	34.314	408	244	7	738	1123	603	1008	5.38e-71	259
MsaG009708	MtrunA17_Chr7g0270101	33.735	415	237	7	737	1123	383	787	3.31e-68	246
MsaG009708	MtrunA17_Chr5g0407211	34.752	423	233	11	738	1123	3	419	1.49e-66	231
MsaG009708	MtrunA17_Chr3g0134811	32.675	456	236	8	737	1123	338	791	1.67e-66	241
MsaG009708	MtrunA17_Chr5g0407251	34.515	423	234	11	738	1123	3	419	1.95e-65	228
MsaG009708	MtrunA17_Chr3g0134821	34.763	443	247	11	717	1127	404	836	6.35e-61	225

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009708	AT3G14980.5	48.734	632	279	10	571	1179	427	1036	0.0	577
MsaG009708	AT3G14980.5	32.031	256	145	4	146	376	73	324	4.04e-28	124
MsaG009708	AT3G14980.6	48.734	632	279	10	571	1179	472	1081	0.0	576
MsaG009708	AT3G14980.6	30.769	403	212	9	1	376	7	369	2.35e-33	140
MsaG009708	AT3G14980.1	48.734	632	279	10	571	1179	472	1081	0.0	576
MsaG009708	AT3G14980.1	30.769	403	212	9	1	376	7	369	2.35e-33	140
MsaG009708	AT3G14980.2	48.734	632	279	10	571	1179	472	1081	0.0	576
MsaG009708	AT3G14980.2	30.769	403	212	9	1	376	7	369	2.35e-33	140
MsaG009708	AT3G14980.3	50.785	573	243	6	571	1124	472	1024	0.0	570
MsaG009708	AT3G14980.3	30.769	403	212	9	1	376	7	369	1.90e-33	140

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Find 268 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGAAGCACTTGAAT+GGG	0.498815	2:+63631517	None:intergenic
AAAAGGTTCATTCTGCTCAG+TGG	0.624275	2:-63627243	MsaT009708.1:intron
AAAGATGGCACTGAATCTGG+TGG	0.653852	2:-63625269	MsaT009708.1:CDS
AAAGCTATAAAGGCCGTTGC+AGG	0.380573	2:-63630896	MsaT009708.1:CDS
AAAGGTCGGTGCTCTGAAAA+GGG	0.495460	2:-63631915	MsaT009708.1:CDS
AAAGTAGGTACCTGCTCTGA+AGG	0.547142	2:-63625557	MsaT009708.1:CDS
AAATCGGTCCGAATGCAGTG+AGG	0.724403	2:-63631390	MsaT009708.1:CDS
AAATGCGGAAGAAGTGCAAA+AGG	0.506972	2:-63631286	MsaT009708.1:CDS
AAATGGGAACATCCCGAAAG+AGG	0.575647	2:-63632487	MsaT009708.1:CDS
AAATGTATAACTACTACAAA+AGG	0.468270	2:+63631944	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	63625082	63633102	63625082	ID=MsaG009708
Chr2	mRNA	63625082	63633102	63625082	ID=MsaT009708.1;Parent=MsaG009708
Chr2	exon	63625082	63625620	63625082	ID=MsaT009708.1.exon10;Parent=MsaT009708.1
Chr2	CDS	63625082	63625620	63625082	ID=cds.MsaT009708.1;Parent=MsaT009708.1
Chr2	exon	63625877	63626069	63625877	ID=MsaT009708.1.exon9;Parent=MsaT009708.1
Chr2	CDS	63625877	63626069	63625877	ID=cds.MsaT009708.1;Parent=MsaT009708.1
Chr2	exon	63626509	63626608	63626509	ID=MsaT009708.1.exon8;Parent=MsaT009708.1
Chr2	CDS	63626509	63626608	63626509	ID=cds.MsaT009708.1;Parent=MsaT009708.1
Chr2	exon	63626870	63626956	63626870	ID=MsaT009708.1.exon7;Parent=MsaT009708.1
Chr2	CDS	63626870	63626956	63626870	ID=cds.MsaT009708.1;Parent=MsaT009708.1
Chr2	exon	63627115	63627260	63627115	ID=MsaT009708.1.exon6;Parent=MsaT009708.1
Chr2	CDS	63627115	63627260	63627115	ID=cds.MsaT009708.1;Parent=MsaT009708.1
Chr2	exon	63627293	63627331	63627293	ID=MsaT009708.1.exon5;Parent=MsaT009708.1
Chr2	CDS	63627293	63627331	63627293	ID=cds.MsaT009708.1;Parent=MsaT009708.1
Chr2	exon	63629055	63629137	63629055	ID=MsaT009708.1.exon4;Parent=MsaT009708.1
Chr2	CDS	63629055	63629137	63629055	ID=cds.MsaT009708.1;Parent=MsaT009708.1
Chr2	exon	63629589	63629712	63629589	ID=MsaT009708.1.exon3;Parent=MsaT009708.1
Chr2	CDS	63629589	63629712	63629589	ID=cds.MsaT009708.1;Parent=MsaT009708.1
Chr2	exon	63630413	63632263	63630413	ID=MsaT009708.1.exon2;Parent=MsaT009708.1
Chr2	CDS	63630413	63632263	63630413	ID=cds.MsaT009708.1;Parent=MsaT009708.1
Chr2	exon	63632335	63633102	63632335	ID=MsaT009708.1.exon1;Parent=MsaT009708.1
Chr2	CDS	63632335	63633102	63632335	ID=cds.MsaT009708.1;Parent=MsaT009708.1

Gene Sequence

>MsaT009708.1

ATGGAACATTTATGCGATGATAACTTTGAAGGATCTAATGAAGAAAGACAGATTTTTACAGAGGTCTTTTTTGGTGATGACACTTTTCAGTCTAGTCAGAGGCGTGTAATTTCTGGAGCCATCAACCTTGAACATGAATCCACGAAAAACACATTGAAGTCATTTGGCTCTAGTAATGAAAACTCGGTCATATGGCGTCCCTCGTCTTCAAGATTTACCCATCCCGAGGAGGACATTAATGCAATTCAGCATTCCAATGAGACTGCTCTGGGGTGTTTGCCAGAGAGTTTAACTTGTGAAAATCAGAATGATGAAATTGTAAATGTCAAACGTATGAAATTTTCTCTGCACGAACTTCCTTGTAGTAGATCTAATTCAGATGTTTTGGGTTCATCTGGAATTCCAAAAGTAGTAATTTCCAACCTGACTTGTGCTACTACAGACTGTGATAGTGACTCGATTGCATTTCGTACAGTTGAATCATCTAAACACGGTGTGATATCTAGTTGCTATCTATTGAAGCATAACTTGGTACAGAAAATTCATGCTTCTAATGATGATGCAGATGTTACAGATTGTAAATCTAAAACAGAAAATGGGAACATCCCGAAAGAGGTGTCTGTAAGTAAGGCAGTTGCTTCTCCTGTATCCCAGGAGAGCTCGGCAAACAGGCTAGTAGTGACGAGTCCATCAATCACTGTTGTGAAGAAGTCCGAGTCTCCCTTAAGAACTGAGGAAATGCCTGAAGGGTTTCAATCTTCTAATATGTTGCTTACGATGTCAGGATGGTCTATTGGGAAGCATCAACGGCCTTCTAGGCGGTGGATGGAGTCATTCTACAAGACACCAAAGGGAAAAATTATGCGGGAATTTACAAAAGTTTGGAGATTATGTGGCCAACTTTTGTCTGTTGAAAAGTGCAATGTAACATATGGAGGCCGTAAGGAATGGACCAATATTAGCGATTTTTGGTCCGATCTATCGAGTGCACTGAAAAATGTTGAAAAATTAAAAAACCAGCCAGAGACCGCTGCTATGTTGGCTTATCAATGGTGGATTATGGATCCTTTTGTAGTAGTTATACATTTTGATAGAAAGGTCGGTGCTCTGAAAAGGGGAGAAGAGGTTATAAAAGCAAGTTGTAGTTTAGTTTCTAGCAAGGGTAAAATGGCATATTCTTCAAAAAAAAAGGGTAAAATGGCATATGCTCCAGTTGATTCAGCCTTGGAGAATACGTCTCACACTCTTTCTGAACAAAAGCACGACCAAGCCATTTTCTGCGACTCTTCAACAGCCACCAGAACCACAGAAATATCTGCTTTTATGATAAACAGTCATGCTTGTAAACAGACATCTGACAGTAACCAAGAAGATATGTATGTCGAAGAACATAAACCAAACATCATAGAAAACCGATTAATGGAAATGTCAGTGAGCAAAAGTAGTATGGATCTAGCCTCTTTACCTGCTTGTGCATTGGGTAGCACTGTTACCCATTCAAGTGCTTCCTCTTTTGATGTTCTTACAAGCTCTGGAAATTTGGACTTGGAATCTAAAGTGAATGCTGTTCATCAAGCTAAACTTAGAAATTCTAAAAGCTTTGATAAGCACGCATCAGAAAATCGGTCCGAATGCAGTGAGGAAGAGGGGAGGAAAATCTCAATGGCTTCTGTTTTTGGGAAAGATAGTACATGGTCTTCCTCTAATGGTATGCTTAAAAAGAAAATGCGGAAGAAGTGCAAAAGGATATCTCAAATCAAACCGAGTATGTTATACCACAGTGACATACTGGGATCAACTATTACTGATCAGGTGCAGTCACTGAATGGTGATGTATGTGGCACTCAGACTGTGTTGGAAGAAGTTCAAGATTATGTAGTTGACAGTGTGGGAAAAAAAAGGAACAAGAAGAAGTTATCAGGCAGTGCAAACCAGCGACATATTAACAAAACAAACTACTCTATTACTAAAACAAATAAGTCCAATAGATGCCATATTGAAGATGACGATCTATTAGTGTCAGCAATACTCAAGAATAAGGACTTCAACCCAAAGATAATCCGAGGTAAATCTAGAGCTAAATCCGGCAAATCAAGGGGTTTGAGAAAGCTTAAAAGCTATAAAGGCCGTTGCAGGTTGCTGCCAAGGAATCCTTGTAATGGAGGGAAGCACAATATGGATGGGAAGAAGTATTATCTTGGGGAAAGGACTCTCTTGTCCTGGTTGATTGAGAATGAGGTCATATGTTTAAATGATATCATTCAATACCGAAACCCTAAAGATAATTCTGTCACTAAGGATGGCAAGATCACCAAAGACGGTATTGTTTGTAAGTGTTGCGGTAAGGTGCTTACATTATCAGAGTTCAAGATTCATGCTGGGTTTACACTTAGTCGCCCTTGCTTGAATCTTTTCATGAAGTCTGGTGAGCCTTTTACACTTTGCCTCCTTCAAGCTTGGTCAGCTGAATACAAAGCCAGGAAAAGTCAAAATCAAGCTGGGAACATTGTTGATAATGACAGAAATGATGATTCGTGCGGGATGTGTGGTGAGGGAGGTGAGCTGATATGTTGTGATAACTGCCCCTCTACTTTTCACCTGGCTTGTTTGTCCGCTCAGGAGATCCCCGACGGCAACTGGTACTGCATAAACTGCACTTGTCGGATTTGTGGAAATTTGGTCGTTGATAAAGAGGTTTCAGATGCACATGATTCATCGCAATGTTCACAATGCGAACATAAATATCACAAGAAATGCCTCGGAGAAAGAGATAAACTAGAAGGAGCTGTTTCAGACACTTGGTTTTGTAGTCAAAGTTGTCGGGAGGTTGGGCTAGTTAATCAAATTGCTGATGGCTTCGCCTGGGTTCATTCTGCTCAGTGGTTTGCCCTAAAGGCAGTATGCAATACAAAATTAGCTGTTGCCCTTACCATCATGGAGGAGTGTTTCGTGTCAATGCTAGATCTAAGAACAGGCATCCACATGATACCCCAAGTTTTATTCAATTGGGGGTCTGATTTTGCTCGTCTGAATTTTCAAGGGTTTTACACAGTGGTGTTGGAAAAACAGGATGTGTTAATATCTGTAGCATCTATCAGAGTGCACGGGACTACCGTTGCAGAGATGCCTCTGATTGCAACTTGCAGTCGGTATCGTCGCCAAGGAATGTGCCGACGCCTCGTGAGCTCAATCGAAGAGATGTTAATATCTGTCAAGGTAGAAAAGCTTGTGGTATCAGCCATTCCGGATTTGGTGGAGACTTGGACCAAGGGCTTTGGATTCATACCTGTAGGCGACATTGAAAAACGAAGGTTAAAGAAAAACAACTTAATGGTTTTTCCTGGAACAGTGTTACTTGAAAAATCCTTGTATGGCAAGAAGAAAGATGAAGGATTGTGTGATCAATCAACTTTAGCAACAGATGAATCATTCAAAGTAGGTACCTGCTCTGAAGGAATGGACATAGCTGGATCATTGCCGCTAGATGTTGGGAACGCAGCTACCAACGAAGTTGGTGCTAAGTCAGAGTGTGAGCCTGTGGACTGCAAAAATCAACCAGACAATAGGGCCGACAGTGAAATCAGCAGAGATGATAATATTCTAGCCGTTGAAATTGCATTAGGAGATGAAGAATCAACAGAGACAAGTAGGTCTTTCGGTGAAGAGAAAATCACCCCTTTTGAAGGAAACAATGTGGAGGAACCAAGAACAAGTGCCAACAAAGATGGCACTGAATCTGGTGGAAGAGTTTTTGAGGACAAGCATATCAATATAGGTGAAGTAAAGGAAAATGATTTGCATGAACATGTTTCAAATGTGTCGTGCAAGACATTTTCAGGCAACAATTTTGACACAGTATCTAATTTTGAATGCTCAGCGATGTATGATGAAACCGTTATTTTTGGTTCACTAGCAAACTCTGCAAATTAG

Protein sequence

>MsaT009708.1

MEHLCDDNFEGSNEERQIFTEVFFGDDTFQSSQRRVISGAINLEHESTKNTLKSFGSSNENSVIWRPSSSRFTHPEEDINAIQHSNETALGCLPESLTCENQNDEIVNVKRMKFSLHELPCSRSNSDVLGSSGIPKVVISNLTCATTDCDSDSIAFRTVESSKHGVISSCYLLKHNLVQKIHASNDDADVTDCKSKTENGNIPKEVSVSKAVASPVSQESSANRLVVTSPSITVVKKSESPLRTEEMPEGFQSSNMLLTMSGWSIGKHQRPSRRWMESFYKTPKGKIMREFTKVWRLCGQLLSVEKCNVTYGGRKEWTNISDFWSDLSSALKNVEKLKNQPETAAMLAYQWWIMDPFVVVIHFDRKVGALKRGEEVIKASCSLVSSKGKMAYSSKKKGKMAYAPVDSALENTSHTLSEQKHDQAIFCDSSTATRTTEISAFMINSHACKQTSDSNQEDMYVEEHKPNIIENRLMEMSVSKSSMDLASLPACALGSTVTHSSASSFDVLTSSGNLDLESKVNAVHQAKLRNSKSFDKHASENRSECSEEEGRKISMASVFGKDSTWSSSNGMLKKKMRKKCKRISQIKPSMLYHSDILGSTITDQVQSLNGDVCGTQTVLEEVQDYVVDSVGKKRNKKKLSGSANQRHINKTNYSITKTNKSNRCHIEDDDLLVSAILKNKDFNPKIIRGKSRAKSGKSRGLRKLKSYKGRCRLLPRNPCNGGKHNMDGKKYYLGERTLLSWLIENEVICLNDIIQYRNPKDNSVTKDGKITKDGIVCKCCGKVLTLSEFKIHAGFTLSRPCLNLFMKSGEPFTLCLLQAWSAEYKARKSQNQAGNIVDNDRNDDSCGMCGEGGELICCDNCPSTFHLACLSAQEIPDGNWYCINCTCRICGNLVVDKEVSDAHDSSQCSQCEHKYHKKCLGERDKLEGAVSDTWFCSQSCREVGLVNQIADGFAWVHSAQWFALKAVCNTKLAVALTIMEECFVSMLDLRTGIHMIPQVLFNWGSDFARLNFQGFYTVVLEKQDVLISVASIRVHGTTVAEMPLIATCSRYRRQGMCRRLVSSIEEMLISVKVEKLVVSAIPDLVETWTKGFGFIPVGDIEKRRLKKNNLMVFPGTVLLEKSLYGKKKDEGLCDQSTLATDESFKVGTCSEGMDIAGSLPLDVGNAATNEVGAKSECEPVDCKNQPDNRADSEISRDDNILAVEIALGDEESTETSRSFGEEKITPFEGNNVEEPRTSANKDGTESGGRVFEDKHINIGEVKENDLHEHVSNVSCKTFSGNNFDTVSNFECSAMYDETVIFGSLANSAN*