AlfalfaGEDB | MsaG009745

M. sativa ssp. caerulea / MsaG009745

KEGG: -
GO: GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
PFAM: PF01426.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009745	XP_013464613.1	99.438	178	1	0	1	178	31	208	1.39e-130	375

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009745	sp\|F4JL28\|EBS_ARATH	88.202	178	21	0	1	178	39	216	1.36e-119	340

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009745	tr\|I3T296\|I3T296_MEDTR	99.438	178	1	0	1	178	31	208	6.64e-131	375

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TFs/TRs:

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Gene ID	Type	Classification
MsaG009745	TR	PHD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009745	MtrunA17_Chr2g0316511	99.438	178	1	0	1	178	31	208	1.28e-134	375
MsaG009745	MtrunA17_Chr3g0145031	70.950	179	50	2	1	178	33	210	1.30e-95	276
MsaG009745	MtrunA17_Chr3g0145041	63.057	157	55	1	1	157	15	168	1.58e-73	219
MsaG009745	MtrunA17_Chr2g0324381	65.217	161	53	2	1	159	38	197	9.17e-69	207
MsaG009745	MtrunA17_Chr5g0447451	48.819	127	55	5	41	157	15	141	7.83e-34	117
MsaG009745	MtrunA17_Chr2g0324361	56.989	93	37	2	1	93	18	107	2.98e-30	107

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG009745	AT4G22140.2	88.202	178	21	0	1	178	39	216	9.84e-121	340
MsaG009745	AT4G22140.1	88.202	178	21	0	1	178	39	216	1.38e-120	340
MsaG009745	AT4G22140.3	88.202	178	21	0	1	178	39	216	1.38e-120	340
MsaG009745	AT4G04260.1	74.860	179	43	2	1	178	1	178	2.71e-92	267
MsaG009745	AT4G04260.2	74.860	179	43	2	1	178	14	191	2.87e-92	268
MsaG009745	AT4G39100.1	73.418	158	41	1	1	157	31	188	2.83e-87	256
MsaG009745	AT4G39100.2	74.436	133	33	1	1	132	31	163	1.85e-72	216
MsaG009745	AT4G04260.3	85.321	109	16	0	1	109	32	140	9.90e-65	196

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Find 46 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGCTCACACTATTGAA+GGG	0.633847	2:-64057923	MsaT009745.1:CDS
AACATTCAGAACAAACAAAA+TGG	0.403224	2:+64056857	None:intergenic
AAGACAGTTTCATGGAGCTA+AGG	0.520921	2:-64057976	MsaT009745.1:CDS
AAGATAATAGGAACAATGTG+AGG	0.571957	2:-64058046	MsaT009745.1:CDS
ACCCTTCACACTGCACCATT+AGG	0.433071	2:+64057619	None:intergenic
ACCTAATGGTGCAGTGTGAA+GGG	0.605001	2:-64057620	MsaT009745.1:CDS
ACTCACACAGCAACACGGTC+AGG	0.504648	2:+64057795	None:intergenic
ACTGCACCATTAGGTCATCC+GGG	0.612849	2:+64057628	None:intergenic
AGAAGATCGAGCAAGATAAT+AGG	0.403757	2:-64058058	MsaT009745.1:CDS
AGACCTGAAGAATCTATTGG+TGG	0.602382	2:-64058002	MsaT009745.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	64056435	64058126	64056435	ID=MsaG009745
Chr2	mRNA	64056435	64058126	64056435	ID=MsaT009745.1;Parent=MsaG009745
Chr2	exon	64056435	64056458	64056435	ID=MsaT009745.1.exon4;Parent=MsaT009745.1
Chr2	CDS	64056435	64056458	64056435	ID=cds.MsaT009745.1;Parent=MsaT009745.1
Chr2	exon	64056792	64056930	64056792	ID=MsaT009745.1.exon3;Parent=MsaT009745.1
Chr2	CDS	64056792	64056930	64056792	ID=cds.MsaT009745.1;Parent=MsaT009745.1
Chr2	exon	64057609	64057677	64057609	ID=MsaT009745.1.exon2;Parent=MsaT009745.1
Chr2	CDS	64057609	64057677	64057609	ID=cds.MsaT009745.1;Parent=MsaT009745.1
Chr2	exon	64057801	64058126	64057801	ID=MsaT009745.1.exon1;Parent=MsaT009745.1
Chr2	CDS	64057801	64058126	64057801	ID=cds.MsaT009745.1;Parent=MsaT009745.1

Gene Sequence

>MsaT009745.1

ATGCGTCCTTCTGACACGAGTAAGCCACCCTATGTGGCACGTGTGGAGAAGATCGAGCAAGATAATAGGAACAATGTGAGGGTTCGTGTGAGATGGTATTATAGACCTGAAGAATCTATTGGTGGAAGAAGACAGTTTCATGGAGCTAAGGAGCTGTTTTTATCTGACCATTTTGATGTTCAAAGTGCTCACACTATTGAAGGGAAATGCATTGTTCACTCTTTCAAGAACTATACTAAGCTTGAGAATGTAGGTTCTGAGGATTACTATTGTAGGTTTGAGTATAAAGCTGCTACTGGTGCTTTCACTCCTGACCGTGTTGCTGTATACTGCAAATGCGAGATGCCTTATAACCCGGATGACCTAATGGTGCAGTGTGAAGGGTGCAAGGATTGGTACCATCCTGCTTGTGTGGGCATGACTATCGAAGAAGCAAAGAAATTGGACCATTTTGTTTGTTCTGAATGTTCATCTGACGATGATTTGAAGAAACCACAGGCGGCGTTTCCTGTATCACCAGGATCTGATAGCAAGGGAATTATACATTTTATTGCTTAG

Protein sequence

>MsaT009745.1

MRPSDTSKPPYVARVEKIEQDNRNNVRVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHSFKNYTKLENVGSEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDLKKPQAAFPVSPGSDSKGIIHFIA*