AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG009811

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG009811 MtrunA17_Chr2g0317451 94.515 237 13 0 1 237 1 237 5.92e-170 467
MsaG009811 MtrunA17_Chr2g0317481 94.515 237 13 0 1 237 1 237 2.91e-169 466
MsaG009811 MtrunA17_Chr5g0422941 81.780 236 43 0 1 236 1 236 3.43e-143 400
MsaG009811 MtrunA17_Chr5g0419601 76.889 225 52 0 1 225 1 225 5.90e-126 356
MsaG009811 MtrunA17_Chr5g0422421 75.877 228 55 0 1 228 1 228 2.33e-123 350
MsaG009811 MtrunA17_Chr1g0188671 71.111 225 65 0 1 225 39 263 3.46e-115 330
MsaG009811 MtrunA17_Chr8g0355091 65.401 237 82 0 1 237 1 237 6.32e-115 328
MsaG009811 MtrunA17_Chr1g0187361 71.111 225 65 0 1 225 1 225 7.59e-114 325
MsaG009811 MtrunA17_Chr1g0206721 67.580 219 71 0 1 219 1 219 3.36e-110 316
MsaG009811 MtrunA17_Chr1g0206701 65.333 225 78 0 1 225 1 225 1.06e-108 312
MsaG009811 MtrunA17_Chr1g0149391 67.123 219 72 0 1 219 1 219 4.98e-107 308
MsaG009811 MtrunA17_Chr2g0292791 64.384 219 78 0 1 219 1 219 6.51e-106 305
MsaG009811 MtrunA17_Chr3g0099421 63.927 219 79 0 1 219 26 244 1.22e-101 295
MsaG009811 MtrunA17_Chr3g0089141 62.553 235 70 3 1 225 1 227 4.21e-100 290
MsaG009811 MtrunA17_Chr2g0300441 59.746 236 94 1 1 236 1 235 2.77e-98 286
MsaG009811 MtrunA17_Chr1g0208561 62.128 235 71 3 1 225 1 227 5.47e-98 285
MsaG009811 MtrunA17_Chr1g0206691 60.455 220 87 0 18 237 1 220 1.43e-95 278
MsaG009811 MtrunA17_Chr2g0325971 60.851 235 74 3 1 225 1 227 1.39e-94 276
MsaG009811 MtrunA17_Chr1g0208581 61.574 216 75 1 1 216 1 208 8.80e-92 269
MsaG009811 MtrunA17_Chr3g0099411 61.187 219 66 2 1 219 1 200 2.28e-91 268
MsaG009811 MtrunA17_Chr1g0206991 63.736 182 66 0 1 182 1 182 2.99e-82 243
MsaG009811 MtrunA17_Chr7g0238991 53.247 231 106 2 7 236 18 247 2.83e-81 243
MsaG009811 MtrunA17_Chr3g0085241 48.128 187 87 1 5 191 37 213 6.67e-57 181
MsaG009811 MtrunA17_Chr2g0300421 64.234 137 49 0 1 137 1 137 2.08e-55 175
MsaG009811 MtrunA17_Chr3g0119901 48.315 178 92 0 1 178 1 178 5.55e-55 175
MsaG009811 MtrunA17_Chr3g0089151 63.710 124 45 0 1 124 1 124 2.13e-52 166
MsaG009811 MtrunA17_Chr3g0111931 73.529 102 27 0 21 122 2 103 1.93e-50 160
MsaG009811 MtrunA17_Chr1g0187351 84.848 66 10 0 18 83 1 66 1.44e-35 121
MsaG009811 MtrunA17_Chr3g0111841 91.525 59 5 0 15 73 2 60 2.25e-32 112
MsaG009811 MtrunA17_Chr8g0379021 36.628 172 91 4 5 167 8 170 1.93e-30 111
MsaG009811 MtrunA17_Chr2g0333981 34.483 174 102 3 5 174 8 173 1.31e-28 106
MsaG009811 MtrunA17_Chr4g0018951 37.419 155 85 2 5 159 8 150 1.53e-28 106
MsaG009811 MtrunA17_Chr3g0111831 74.603 63 16 0 16 78 11 73 1.59e-25 95.9
MsaG009811 MtrunA17_Chr4g0071601 34.054 185 100 5 5 175 8 184 5.72e-22 89.4
MsaG009811 MtrunA17_Chr1g0169761 53.623 69 32 0 9 77 2 70 3.19e-21 87.4
MsaG009811 MtrunA17_Chr1g0175601 49.333 75 38 0 9 83 2 76 3.74e-21 87.0
MsaG009811 MtrunA17_Chr8g0376821 53.623 69 32 0 9 77 2 70 4.72e-21 87.0
MsaG009811 MtrunA17_Chr1g0175611 48.101 79 41 0 9 87 2 80 6.35e-21 86.3
MsaG009811 MtrunA17_Chr8g0357771 50.633 79 39 0 9 87 2 80 1.75e-20 85.5
MsaG009811 MtrunA17_Chr4g0074101 48.101 79 41 0 9 87 2 80 2.85e-20 85.1
MsaG009811 MtrunA17_Chr1g0180591 50.649 77 37 1 9 84 2 78 3.01e-20 84.7
MsaG009811 MtrunA17_Chr8g0356071 50.725 69 34 0 9 77 2 70 1.04e-18 80.1
MsaG009811 MtrunA17_Chr4g0020221 27.962 211 113 4 9 186 2 206 2.14e-18 81.6
MsaG009811 MtrunA17_Chr4g0049901 56.061 66 29 0 10 75 29 94 3.36e-18 80.5
MsaG009811 MtrunA17_Chr3g0077501 51.471 68 33 0 9 76 2 69 4.63e-18 80.1
MsaG009811 MtrunA17_Chr4g0052081 53.623 69 32 0 9 77 2 70 5.76e-18 78.6
MsaG009811 MtrunA17_Chr8g0351051 50.633 79 37 1 9 85 2 80 8.68e-18 79.7
MsaG009811 MtrunA17_Chr4g0057151 52.239 67 32 0 10 76 3 69 1.43e-17 78.2
MsaG009811 MtrunA17_Chr4g0052061 52.174 69 33 0 9 77 2 70 1.69e-17 77.0
MsaG009811 MtrunA17_Chr5g0427401 50.000 68 34 0 9 76 2 69 1.78e-17 78.6
MsaG009811 MtrunA17_Chr4g0049541 37.143 105 65 1 9 112 2 106 2.39e-17 78.2
MsaG009811 MtrunA17_Chr3g0097101 45.946 74 40 0 3 76 11 84 9.61e-17 76.6
MsaG009811 MtrunA17_Chr4g0061691 50.725 69 33 1 9 76 2 70 9.97e-17 76.6
MsaG009811 MtrunA17_Chr8g0345001 34.395 157 92 3 8 159 17 167 1.25e-16 75.1
MsaG009811 MtrunA17_Chr7g0246431 52.239 67 32 0 10 76 3 69 2.23e-16 75.1
MsaG009811 MtrunA17_Chr2g0279821 47.059 68 36 0 9 76 2 69 2.38e-16 75.5
MsaG009811 MtrunA17_Chr6g0474371 50.725 69 33 1 9 76 2 70 2.52e-16 74.7
MsaG009811 MtrunA17_Chr3g0134451 45.556 90 47 2 9 97 2 90 2.71e-16 76.6
MsaG009811 MtrunA17_Chr8g0351041 49.275 69 35 0 10 78 3 71 2.78e-16 73.9
MsaG009811 MtrunA17_Chr8g0380021 50.000 68 34 0 9 76 18 85 2.84e-16 75.5
MsaG009811 MtrunA17_Chr2g0284911 50.000 68 34 0 9 76 17 84 5.48e-16 75.1
MsaG009811 MtrunA17_Chr1g0204111 51.471 68 33 0 9 76 18 85 6.53e-16 74.7
MsaG009811 MtrunA17_Chr5g0412271 48.529 68 35 0 9 76 2 69 7.67e-16 73.9
MsaG009811 MtrunA17_Chr5g0412461 48.529 68 35 0 9 76 2 69 1.11e-15 73.6
MsaG009811 MtrunA17_Chr8g0351031 49.275 69 35 0 10 78 3 71 1.17e-15 73.6
MsaG009811 MtrunA17_Chr7g0246381 54.545 66 25 1 9 69 2 67 2.03e-15 68.9
MsaG009811 MtrunA17_Chr3g0093131 31.690 142 82 4 26 159 36 170 2.81e-15 71.6
MsaG009811 MtrunA17_Chr7g0220111 50.725 69 33 1 9 76 2 70 3.10e-15 72.8
MsaG009811 MtrunA17_Chr5g0404951 50.000 70 33 1 9 76 2 71 3.22e-15 72.4
MsaG009811 MtrunA17_Chr5g0411691 47.059 68 36 0 9 76 2 69 3.24e-15 72.4
MsaG009811 MtrunA17_Chr6g0455511 50.725 69 33 1 9 76 2 70 3.58e-15 72.4
MsaG009811 MtrunA17_Chr8g0366231 46.377 69 36 1 9 76 2 70 3.94e-15 72.4
MsaG009811 MtrunA17_Chr1g0173161 58.929 56 23 0 9 64 2 57 5.42e-15 68.2
MsaG009811 MtrunA17_Chr7g0220121 44.928 69 37 1 9 76 2 70 8.20e-15 71.6
MsaG009811 MtrunA17_Chr5g0420081 46.377 69 36 1 9 76 2 70 9.35e-15 71.2
MsaG009811 MtrunA17_Chr1g0159661 50.000 66 32 1 9 74 2 66 1.02e-14 70.1
MsaG009811 MtrunA17_Chr3g0125241 45.714 70 36 1 9 76 27 96 1.20e-14 70.5
MsaG009811 MtrunA17_Chr1g0164791 50.000 70 33 1 9 76 2 71 1.29e-14 70.9
MsaG009811 MtrunA17_Chr5g0420091 49.275 69 34 1 9 76 2 70 2.35e-14 69.7
MsaG009811 MtrunA17_Chr5g0427921 49.123 57 29 0 9 65 2 58 4.03e-14 65.1
MsaG009811 MtrunA17_Chr5g0425191 57.895 57 24 0 9 65 2 58 4.06e-14 66.2
MsaG009811 MtrunA17_Chr8g0377561 55.357 56 25 0 9 64 2 57 5.53e-14 65.9
MsaG009811 MtrunA17_Chr4g0061671 52.632 57 27 0 9 65 2 58 7.38e-14 67.8
MsaG009811 MtrunA17_Chr3g0142191 47.619 63 33 0 9 71 2 64 7.45e-14 68.6
MsaG009811 MtrunA17_Chr4g0044071 56.140 57 25 0 9 65 2 58 8.52e-14 65.9
MsaG009811 MtrunA17_Chr2g0308251 52.632 57 27 0 9 65 2 58 8.67e-14 65.1
MsaG009811 MtrunA17_Chr3g0122251 46.377 69 36 1 9 76 2 70 2.44e-13 67.4
MsaG009811 MtrunA17_Chr4g0018421 41.429 70 40 1 9 77 2 71 8.32e-12 62.4
MsaG009811 MtrunA17_Chr4g0060841 38.043 92 54 2 9 97 2 93 1.59e-11 63.2
MsaG009811 MtrunA17_Chr4g0025531 28.191 188 114 7 5 182 5 181 9.24e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG009811 AT5G60440.1 48.148 189 89 4 5 189 3 186 1.67e-51 169
MsaG009811 AT2G24840.1 48.428 159 73 3 9 162 63 217 2.27e-41 142
MsaG009811 AT1G65360.1 39.683 189 107 3 5 192 3 185 2.64e-41 141
MsaG009811 AT1G01530.1 41.237 194 98 4 4 192 2 184 8.98e-40 137
MsaG009811 AT4G36590.1 44.578 166 78 4 5 160 3 164 7.08e-36 127
MsaG009811 AT2G34440.1 33.951 162 105 2 9 170 2 161 4.14e-25 97.8
MsaG009811 AT1G72350.1 34.286 175 79 5 9 182 43 182 6.07e-22 90.9
MsaG009811 AT3G04100.1 29.012 162 111 2 2 159 7 168 3.19e-21 88.2
MsaG009811 AT1G28460.1 32.500 160 102 3 5 161 4 160 2.86e-20 85.1
MsaG009811 AT3G66656.1 41.748 103 59 1 9 110 2 104 3.85e-20 84.7
MsaG009811 AT1G29962.1 29.651 172 105 3 5 170 4 165 6.87e-19 81.6
MsaG009811 AT2G45650.1 55.882 68 30 0 9 76 2 69 1.40e-18 82.4
MsaG009811 AT2G45660.2 54.412 68 31 0 10 77 3 70 1.83e-18 79.7
MsaG009811 AT5G51870.5 54.167 72 33 0 5 76 21 92 2.05e-18 80.5
MsaG009811 AT2G45660.1 54.412 68 31 0 10 77 3 70 4.23e-18 80.1
MsaG009811 AT5G51870.1 55.224 67 30 0 10 76 3 69 6.60e-18 79.7
MsaG009811 AT5G51870.2 55.224 67 30 0 10 76 3 69 7.13e-18 78.6
MsaG009811 AT4G22950.2 52.239 67 32 0 10 76 3 69 7.43e-18 78.6
MsaG009811 AT4G24540.1 37.162 148 76 4 9 156 2 132 1.08e-17 79.3
MsaG009811 AT5G51870.3 52.703 74 33 1 3 76 8 79 1.09e-17 79.3
MsaG009811 AT5G51870.4 55.224 67 30 0 10 76 3 69 1.34e-17 79.0
MsaG009811 AT1G77980.1 46.067 89 47 1 9 96 2 90 1.65e-17 80.5
MsaG009811 AT4G22950.3 52.239 67 32 0 10 76 3 69 2.02e-17 78.6
MsaG009811 AT4G22950.1 52.239 67 32 0 10 76 3 69 2.02e-17 78.6
MsaG009811 AT4G09960.1 50.000 68 34 0 9 76 2 69 2.10e-17 78.6
MsaG009811 AT4G09960.2 50.000 68 34 0 9 76 2 69 2.10e-17 78.6
MsaG009811 AT4G09960.6 50.000 68 34 0 9 76 3 70 2.11e-17 78.6
MsaG009811 AT4G09960.5 50.000 68 34 0 9 76 12 79 2.91e-17 78.6
MsaG009811 AT1G22130.1 42.424 99 56 1 9 106 2 100 3.12e-17 79.7
MsaG009811 AT3G57230.2 48.529 68 35 0 9 76 2 69 3.46e-17 76.3
MsaG009811 AT4G09960.3 50.000 68 34 0 9 76 28 95 3.99e-17 78.6
MsaG009811 AT2G22540.3 51.471 68 33 0 9 76 2 69 4.42e-17 77.8
MsaG009811 AT2G22540.1 51.471 68 33 0 9 76 2 69 4.42e-17 77.8
MsaG009811 AT5G62165.14 52.239 67 32 0 10 76 3 69 5.81e-17 74.3
MsaG009811 AT3G57390.3 52.941 68 32 0 9 76 2 69 5.83e-17 77.4
MsaG009811 AT5G62165.17 52.239 67 32 0 10 76 3 69 6.38e-17 75.9
MsaG009811 AT5G62165.12 52.239 67 32 0 10 76 3 69 6.38e-17 75.9
MsaG009811 AT5G62165.11 52.239 67 32 0 10 76 3 69 6.38e-17 75.9
MsaG009811 AT5G62165.6 52.239 67 32 0 10 76 3 69 7.25e-17 75.5
MsaG009811 AT5G62165.9 52.239 67 32 0 10 76 3 69 7.25e-17 75.5
MsaG009811 AT5G62165.7 52.239 67 32 0 10 76 3 69 7.25e-17 75.5
MsaG009811 AT5G62165.8 52.239 67 32 0 10 76 3 69 7.25e-17 75.5
MsaG009811 AT5G62165.13 52.239 67 32 0 10 76 3 69 7.25e-17 75.5
MsaG009811 AT3G57230.1 48.529 68 35 0 9 76 2 69 8.74e-17 77.0
MsaG009811 AT3G57230.4 48.529 68 35 0 9 76 2 69 8.74e-17 77.0
MsaG009811 AT4G37940.4 50.000 68 34 0 9 76 2 69 8.97e-17 76.6
MsaG009811 AT4G09960.4 50.000 68 34 0 9 76 97 164 1.01e-16 78.2
MsaG009811 AT4G37940.1 50.000 68 34 0 9 76 2 69 1.08e-16 76.6
MsaG009811 AT5G10140.2 49.275 69 34 1 9 76 2 70 1.11e-16 75.5
MsaG009811 AT3G57390.1 52.941 68 32 0 9 76 2 69 1.21e-16 77.0
MsaG009811 AT5G10140.4 49.275 69 34 1 9 76 2 70 1.25e-16 75.5
MsaG009811 AT4G37940.3 50.000 68 34 0 9 76 2 69 1.36e-16 75.1
MsaG009811 AT5G10140.1 49.275 69 34 1 9 76 2 70 1.40e-16 75.9
MsaG009811 AT5G62165.10 52.239 67 32 0 10 76 3 69 1.60e-16 75.5
MsaG009811 AT5G62165.4 52.239 67 32 0 10 76 3 69 1.60e-16 75.5
MsaG009811 AT5G23260.4 35.065 154 72 4 5 130 14 167 1.70e-16 77.0
MsaG009811 AT5G62165.3 52.239 67 32 0 10 76 3 69 2.10e-16 75.5
MsaG009811 AT5G62165.1 52.239 67 32 0 10 76 3 69 2.10e-16 75.5
MsaG009811 AT5G62165.2 52.239 67 32 0 10 76 3 69 2.10e-16 75.5
MsaG009811 AT3G54340.1 46.575 73 37 1 9 79 2 74 2.78e-16 75.5
MsaG009811 AT5G13790.2 51.471 68 33 0 9 76 2 69 2.88e-16 76.3
MsaG009811 AT5G13790.1 51.471 68 33 0 9 76 2 69 2.98e-16 76.3
MsaG009811 AT1G77950.3 41.573 89 51 1 9 96 2 90 3.03e-16 75.9
MsaG009811 AT1G77950.2 41.573 89 51 1 9 96 2 90 3.03e-16 75.9
MsaG009811 AT1G77950.1 41.573 89 51 1 9 96 2 90 3.03e-16 75.9
MsaG009811 AT1G77950.4 41.573 89 51 1 9 96 2 90 3.03e-16 75.9
MsaG009811 AT5G10140.3 49.275 69 34 1 9 76 2 70 3.10e-16 74.7
MsaG009811 AT1G47760.1 34.783 115 65 2 9 115 2 114 3.37e-16 74.3
MsaG009811 AT5G23260.2 35.333 150 69 4 9 130 2 151 3.60e-16 75.9
MsaG009811 AT5G51860.2 52.239 67 32 0 10 76 3 69 4.04e-16 74.7
MsaG009811 AT4G18960.1 48.611 72 37 0 9 80 18 89 4.06e-16 75.5
MsaG009811 AT3G58780.1 49.296 71 36 0 6 76 14 84 4.60e-16 75.5
MsaG009811 AT2G42830.1 50.000 68 34 0 9 76 17 84 4.75e-16 75.1
MsaG009811 AT2G42830.2 50.000 68 34 0 9 76 17 84 5.25e-16 75.1
MsaG009811 AT3G58780.5 49.296 71 36 0 6 76 20 90 5.37e-16 75.1
MsaG009811 AT2G22630.1 48.529 68 35 0 9 76 2 69 6.02e-16 74.7
MsaG009811 AT2G22630.2 48.529 68 35 0 9 76 2 69 6.02e-16 74.7
MsaG009811 AT5G51860.1 52.239 67 32 0 10 76 3 69 6.13e-16 74.3
MsaG009811 AT1G69120.2 37.000 100 55 2 9 100 2 101 8.07e-16 74.3
MsaG009811 AT3G58780.4 49.296 71 36 0 6 76 14 84 1.22e-15 74.7
MsaG009811 AT3G30260.1 46.377 69 36 1 9 76 2 70 1.29e-15 73.9
MsaG009811 AT5G23260.1 43.564 101 48 3 5 96 14 114 1.30e-15 74.3
MsaG009811 AT1G69120.1 37.000 100 55 2 9 100 2 101 1.74e-15 73.9
MsaG009811 AT5G60910.1 47.826 69 35 1 9 76 2 70 3.08e-15 72.8
MsaG009811 AT3G61120.1 51.471 68 33 0 9 76 2 69 3.30e-15 72.8
MsaG009811 AT5G23260.3 44.330 97 45 3 9 96 2 98 3.64e-15 72.8
MsaG009811 AT1G28450.1 28.834 163 107 4 5 161 4 163 4.13e-15 71.6
MsaG009811 AT1G26310.1 47.826 69 35 1 9 76 2 70 4.45e-15 72.8
MsaG009811 AT4G11880.2 51.471 68 32 1 10 76 3 70 4.95e-15 71.2
MsaG009811 AT4G11880.3 51.471 68 32 1 10 76 3 70 4.95e-15 71.2
MsaG009811 AT2G14210.1 47.826 69 35 1 9 76 2 70 5.35e-15 72.0
MsaG009811 AT1G17310.1 53.165 79 35 1 8 86 47 123 6.43e-15 71.6
MsaG009811 AT2G14210.2 47.826 69 35 1 9 76 2 70 7.13e-15 72.0
MsaG009811 AT4G11880.4 51.471 68 32 1 10 76 3 70 7.28e-15 71.6
MsaG009811 AT4G11880.1 51.471 68 32 1 10 76 3 70 7.28e-15 71.6
MsaG009811 AT5G20240.1 46.575 73 37 1 9 79 2 74 8.67e-15 71.2
MsaG009811 AT5G20240.2 46.575 73 37 1 9 79 2 74 8.75e-15 69.7
MsaG009811 AT1G17310.2 53.165 79 35 1 8 86 58 134 9.53e-15 71.2
MsaG009811 AT5G15800.1 50.725 69 33 1 9 76 2 70 9.90e-15 71.6
MsaG009811 AT5G65050.2 47.826 69 35 1 9 76 2 70 1.05e-14 70.1
MsaG009811 AT2G22540.2 50.000 68 29 1 9 76 2 64 1.55e-14 70.9
MsaG009811 AT5G15800.2 50.725 69 33 1 9 76 2 70 1.64e-14 71.2
MsaG009811 AT5G65050.3 47.826 69 35 1 9 76 2 70 1.78e-14 70.1
MsaG009811 AT5G65050.5 47.826 69 35 1 9 76 2 70 1.80e-14 69.7
MsaG009811 AT5G65050.1 47.826 69 35 1 9 76 2 70 1.83e-14 69.7
MsaG009811 AT5G65060.2 47.826 69 35 1 9 76 2 70 4.90e-14 68.6
MsaG009811 AT2G03710.3 50.000 70 33 2 9 76 2 71 4.93e-14 68.6
MsaG009811 AT5G65060.1 47.826 69 35 1 9 76 2 70 5.50e-14 68.6
MsaG009811 AT5G65060.3 47.826 69 35 1 9 76 2 70 6.90e-14 68.2
MsaG009811 AT1G71692.1 47.143 70 36 1 9 77 2 71 8.89e-14 68.6
MsaG009811 AT2G03710.2 50.000 70 33 2 9 76 2 71 9.84e-14 68.9
MsaG009811 AT2G03710.1 50.000 70 33 2 9 76 2 71 1.03e-13 68.9
MsaG009811 AT3G58780.2 51.667 60 29 0 6 65 14 73 1.06e-13 68.6
MsaG009811 AT3G58780.3 51.667 60 29 0 6 65 14 73 1.44e-13 68.9
MsaG009811 AT3G02310.2 46.377 69 36 1 9 76 2 70 1.45e-13 67.8
MsaG009811 AT1G24260.3 55.357 56 25 0 9 64 2 57 2.45e-13 67.8
MsaG009811 AT3G02310.1 46.377 69 36 1 9 76 2 70 2.45e-13 67.8
MsaG009811 AT1G24260.2 55.357 56 25 0 9 64 2 57 2.60e-13 67.8
MsaG009811 AT1G24260.1 55.357 56 25 0 9 64 2 57 2.65e-13 67.8
MsaG009811 AT5G65070.4 43.478 69 38 1 9 76 2 70 2.88e-13 65.5
MsaG009811 AT5G65070.1 43.478 69 38 1 9 76 2 70 3.00e-13 66.6
MsaG009811 AT5G65070.2 43.478 69 38 1 9 76 2 70 5.39e-13 66.6
MsaG009811 AT5G65070.5 43.478 69 38 1 9 76 2 70 8.85e-13 65.5
MsaG009811 AT5G65070.3 49.123 57 29 0 9 65 2 58 2.31e-12 64.7
MsaG009811 AT1G18750.4 40.000 75 43 1 9 81 2 76 3.51e-12 65.5
MsaG009811 AT1G18750.1 40.000 75 43 1 9 81 2 76 4.54e-12 65.1
MsaG009811 AT1G18750.3 40.000 75 43 1 9 81 2 76 4.60e-12 65.5
MsaG009811 AT5G65080.3 42.029 69 39 1 9 76 9 77 1.24e-11 62.0
MsaG009811 AT4G37435.1 42.254 71 40 1 9 78 2 72 2.10e-11 61.2
MsaG009811 AT5G65080.2 48.148 54 28 0 9 62 9 62 3.61e-11 61.2
MsaG009811 AT5G27130.1 41.975 81 43 2 6 82 10 90 5.02e-11 62.0
MsaG009811 AT2G03060.3 25.620 242 131 12 9 207 2 237 6.34e-11 62.0
MsaG009811 AT2G03060.7 25.620 242 131 12 9 207 2 237 6.34e-11 62.0
MsaG009811 AT2G03060.1 25.620 242 131 12 9 207 2 237 6.34e-11 62.0
MsaG009811 AT2G03060.2 25.620 242 131 12 9 207 2 237 6.35e-11 62.0

Find 56 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCATGATGCCATCATTT+TGG 0.152250 2:-64943541 None:intergenic
TTTGTTTGGTTTCAACAATA+TGG 0.241179 2:+64943949 MsaT009811.1:CDS
TTGTTGAAACCAAACAAATT+AGG 0.245759 2:-64943944 None:intergenic
CCCCATTCATCTTTCGTTGT+TGG 0.261530 2:-64943667 None:intergenic
TCTATGACCGTTTCAACATT+TGG 0.309906 2:-64943494 None:intergenic
TTTGATTCTTGTTGAGGATT+TGG 0.321722 2:-64943884 None:intergenic
TGTTGGACAACATGCTAATA+TGG 0.327440 2:+64943778 MsaT009811.1:CDS
TGATGGCATCATGGAATTCA+TGG 0.359601 2:+64943547 MsaT009811.1:CDS
ATGTTGCAACCTAATTTGTT+TGG 0.363366 2:+64943935 MsaT009811.1:CDS
GGATTTGGTTGATGCTCAAT+AGG 0.364425 2:-64943869 None:intergenic
GAGGATCTTCAGAAACTTGT+TGG 0.372862 2:+64943761 MsaT009811.1:CDS
AGCGAGCTTTGCACCCTTTG+TGG 0.373521 2:+64943413 MsaT009811.1:CDS
TTGTTTGGTTTCAACAATAT+GGG 0.386179 2:+64943950 MsaT009811.1:CDS
TGATTTATTAAAGAAGGCTT+TGG 0.388057 2:+64943739 MsaT009811.1:CDS
CCAACTTGATTTATTAAAGA+AGG 0.389126 2:+64943733 MsaT009811.1:CDS
TGCTAATATGGTTGAAATGC+AGG 0.404469 2:+64943790 MsaT009811.1:CDS
TCCCATTGATGAGATGAATA+TGG 0.418270 2:+64943709 MsaT009811.1:CDS
GACCATATTCATCTCATCAA+TGG 0.429531 2:-64943711 None:intergenic
AACAAATTAGGTTGCAACAT+AGG 0.446627 2:-64943932 None:intergenic
AACAATATGGGAGGAGAAGA+TGG 0.453701 2:+64943962 MsaT009811.1:CDS
GCCAACAACGAAAGATGAAT+GGG 0.457149 2:+64943666 MsaT009811.1:CDS
GGAAAATTTGATTCTTGTTG+AGG 0.459812 2:-64943890 None:intergenic
ACAAATTAGGTTGCAACATA+GGG 0.464364 2:-64943931 None:intergenic
TTTATTAAAGAAGGCTTTGG+AGG 0.489471 2:+64943742 MsaT009811.1:CDS
ACCATATTCATCTCATCAAT+GGG 0.490788 2:-64943710 None:intergenic
GTTGGCTCAGCTCATTCTCA+CGG 0.502310 2:-64943649 None:intergenic
AGCCAACAACGAAAGATGAA+TGG 0.503597 2:+64943665 MsaT009811.1:CDS
TGGTTATCCAAATGTTGAAA+CGG 0.505688 2:+64943487 MsaT009811.1:CDS
CTGATCCCACCCCAAAATGA+TGG 0.513576 2:+64943530 MsaT009811.1:CDS
AGCAATATATGCACCACAAA+GGG 0.515612 2:-64943426 None:intergenic
CCTTCTTTAATAAATCAAGT+TGG 0.517926 2:-64943733 None:intergenic
ACAAAGGGTGCAAAGCTCGC+TGG 0.525634 2:-64943411 None:intergenic
GCTCACGCACCTTGGCTCTA+CGG 0.536826 2:-64943577 None:intergenic
ACCCCAAAATGATGGCATCA+TGG 0.541533 2:+64943538 MsaT009811.1:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 2:+64943375 MsaT009811.1:CDS
GCCAAGGTGCGTGAGCTCAA+TGG 0.556002 2:+64943584 MsaT009811.1:CDS
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 2:+64943374 MsaT009811.1:CDS
ACCATTGAGCTCACGCACCT+TGG 0.575766 2:-64943585 None:intergenic
GCTAATATGGTTGAAATGCA+GGG 0.602624 2:+64943791 MsaT009811.1:CDS
TTTGGTTTCAACAATATGGG+AGG 0.603714 2:+64943953 MsaT009811.1:CDS
GAAGATGGACATGGTCCTCG+TGG 0.606061 2:+64943977 MsaT009811.1:CDS
TTGATGCTCAATAGGCATGT+TGG 0.609005 2:-64943861 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 2:-64943388 None:intergenic
TATATTCTCACCTAGTGAGA+AGG 0.611194 2:+64943454 MsaT009811.1:CDS
GGAGGATTTCCGTAGAGCCA+AGG 0.615589 2:+64943568 MsaT009811.1:CDS
GAGCAATATATGCACCACAA+AGG 0.629097 2:-64943427 None:intergenic
ATGCTCAATAGGCATGTTGG+AGG 0.637536 2:-64943858 None:intergenic
AATGAAAATACCTTCTCACT+AGG 0.637760 2:-64943464 None:intergenic
AAGATGGACATGGTCCTCGT+GGG 0.644048 2:+64943978 MsaT009811.1:CDS
TGTGCATTAGCCATGTCGGG+CGG 0.650518 2:+64943284 None:intergenic
CCAACAACGAAAGATGAATG+GGG 0.679618 2:+64943667 MsaT009811.1:CDS
CAACAACGAAAGATGAATGG+GGG 0.695270 2:+64943668 MsaT009811.1:CDS
ATGGGAGGAGAAGATGGACA+TGG 0.698479 2:+64943968 MsaT009811.1:CDS
TCGGGCGGAAAGAAAACTCG+AGG 0.699514 2:+64943299 MsaT009811.1:CDS
TGGCATCATGGAATTCATGG+AGG 0.743879 2:+64943550 MsaT009811.1:CDS
TCAGATCAAATGAACCCACG+AGG 0.803173 2:-64943992 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 64943296 64944009 64943296 ID=MsaG009811
Chr2 mRNA 64943296 64944009 64943296 ID=MsaT009811.1;Parent=MsaG009811
Chr2 exon 64943296 64944009 64943296 ID=MsaT009811.1.exon1;Parent=MsaT009811.1
Chr2 CDS 64943296 64944009 64943296 ID=cds.MsaT009811.1;Parent=MsaT009811.1
Gene Sequence

>MsaT009811.1

ATGTCGGGCGGAAAGAAAACTCGAGGTCGTCAAAAGATTGAGATGAAAAAGATGAGCAATGAAAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGCGAGCTTTGCACCCTTTGTGGTGCATATATTGCTCTAATTATATTCTCACCTAGTGAGAAGGTATTTTCATTTGGTTATCCAAATGTTGAAACGGTCATAGATCGTTATCTGTCTCTGATCCCACCCCAAAATGATGGCATCATGGAATTCATGGAGGATTTCCGTAGAGCCAAGGTGCGTGAGCTCAATGGTATATTGACTCGTATGAACGATGCAATAGACATTGACAAGAACCGTGAGAATGAGCTGAGCCAACAACGAAAGATGAATGGGGGTCAGTTTTGGTGGACTCGTCCCATTGATGAGATGAATATGGTCCAACTTGATTTATTAAAGAAGGCTTTGGAGGATCTTCAGAAACTTGTTGGACAACATGCTAATATGGTTGAAATGCAGGGTACTTCTACCCAAGCCCTTCCATTTTTTGTTGGAAATGGTTCATCCTCCAACATGCCTATTGAGCATCAACCAAATCCTCAACAAGAATCAAATTTTCCAGCTGAGTTTTTTCATAACCCTATGTTGCAACCTAATTTGTTTGGTTTCAACAATATGGGAGGAGAAGATGGACATGGTCCTCGTGGGTTCATTTGA
Protein sequence

>MsaT009811.1

MSGGKKTRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAYIALIIFSPSEKVFSFGYPNVETVIDRYLSLIPPQNDGIMEFMEDFRRAKVRELNGILTRMNDAIDIDKNRENELSQQRKMNGGQFWWTRPIDEMNMVQLDLLKKALEDLQKLVGQHANMVEMQGTSTQALPFFVGNGSSSNMPIEHQPNPQQESNFPAEFFHNPMLQPNLFGFNNMGGEDGHGPRGFI*