AlfalfaGEDB | MsaG010078

M. sativa ssp. caerulea / MsaG010078

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009268 GO:0009628 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0010200 GO:0010243 GO:0010447 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010078	XP_024631543.1	97.475	396	10	0	1	396	1	396	0.0	815

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010078	sp\|Q0WT24\|STOP2_ARATH	47.207	358	127	7	44	388	53	361	1.17e-108	327

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010078	tr\|A0A396JFA8\|A0A396JFA8_MEDTR	97.475	396	10	0	1	396	1	396	0.0	815

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TFs/TRs:

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Gene ID	Type	Classification
MsaG010078	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG009077	MsaG010078	0.843925	1.939092e-58	8.576962e-56
MsaG010077	MsaG010078	0.943473	3.416200e-102	4.396599e-97
MsaG010078	MsaG038696	0.800653	2.179672e-48	2.990936e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010078	MtrunA17_Chr2g0320341	97.475	396	10	0	1	396	1	396	0.0	815
MsaG010078	MtrunA17_Chr1g0200421	61.350	163	57	2	229	389	236	394	7.84e-71	231
MsaG010078	MtrunA17_Chr8g0382121	56.442	163	66	2	228	389	109	267	1.73e-64	208
MsaG010078	MtrunA17_Chr3g0123941	58.896	163	61	1	227	389	120	276	6.34e-64	207
MsaG010078	MtrunA17_Chr2g0326381	36.129	155	86	3	224	378	41	182	7.31e-26	108
MsaG010078	MtrunA17_Chr1g0185121	34.555	191	110	4	188	378	15	190	5.98e-25	105
MsaG010078	MtrunA17_Chr4g0029521	34.839	155	88	3	224	378	47	188	7.86e-25	105
MsaG010078	MtrunA17_Chr8g0342421	35.484	155	86	3	224	378	71	211	7.94e-25	106
MsaG010078	MtrunA17_Chr4g0053341	37.255	153	87	5	238	388	80	225	8.15e-25	101
MsaG010078	MtrunA17_Chr1g0181381	34.839	155	88	3	224	378	47	188	1.78e-24	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010078	AT5G22890.1	47.207	358	127	7	44	388	53	361	1.19e-109	327
MsaG010078	AT1G34370.3	59.639	166	67	0	224	389	14	179	1.94e-73	231
MsaG010078	AT1G34370.2	36.533	375	192	8	21	389	55	389	9.65e-73	236
MsaG010078	AT1G34370.1	36.533	375	192	8	21	389	55	389	9.65e-73	236
MsaG010078	AT3G45260.2	36.129	155	86	3	224	378	48	189	1.19e-24	105
MsaG010078	AT3G45260.1	36.129	155	86	3	224	378	48	189	1.19e-24	105
MsaG010078	AT5G60470.2	34.839	155	88	4	224	378	53	194	1.40e-24	105
MsaG010078	AT5G60470.3	34.839	155	88	4	224	378	49	190	1.49e-24	105
MsaG010078	AT5G60470.1	35.333	150	84	4	229	378	49	185	2.72e-24	104
MsaG010078	AT5G03150.1	35.484	155	87	3	224	378	62	203	4.61e-24	104

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Find 85 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAATAATAGTATAAGA+GGG	0.620427	2:+68584789	MsaT010078.1:CDS
AAATATTCATGTCCTCAAGA+AGG	0.523706	2:+68585106	MsaT010078.1:CDS
AACATTGTGGTGATCTTAGG+TGG	0.610982	2:+68585287	MsaT010078.1:CDS
AAGCTTATCTTTCCTAGAAA+AGG	0.414705	2:-68585329	None:intergenic
AATATTCATGTCCTCAAGAA+GGG	0.556447	2:+68585107	MsaT010078.1:CDS
AATCAAGTGCAAACTCTTGT+TGG	0.406380	2:+68584401	MsaT010078.1:CDS
AATTTGGGTCATCTTATAAT+TGG	0.155349	2:+68584867	MsaT010078.1:CDS
ACAAATGTTTCCTATGGTCA+CGG	0.597671	2:+68584277	MsaT010078.1:CDS
ACAAGACTCGTCAACATCTA+TGG	0.370241	2:+68584445	MsaT010078.1:CDS
ACACATTATTGTCAAGTTTG+TGG	0.417742	2:+68584953	MsaT010078.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	68584227	68585426	68584227	ID=MsaG010078
Chr2	mRNA	68584227	68585426	68584227	ID=MsaT010078.1;Parent=MsaG010078
Chr2	exon	68584227	68585426	68584227	ID=MsaT010078.1.exon1;Parent=MsaT010078.1
Chr2	CDS	68584227	68585426	68584227	ID=cds.MsaT010078.1;Parent=MsaT010078.1

Gene Sequence

>MsaT010078.1

ATGATGTCAAGGACAACACCTCTAGGGTTTGAAATTGAAAATCAAGGCCTACAAATGTTTCCTATGGTCACGGAAGATTTGATGCCATTGCCAAATTCCATGGAAGGAATTTCTAGTTCAACTTTACCCTCCAATTCCCTCCTTTTCAATCTCTCTACTCTCAAAGACAAGCTCAATCAAGTGCAAACTCTTGTTGGTGTCATTCTCTCCCCAAATCAACAAGACTCGTCAACATCTATGGCATTATCCACAATGAACTCCACAATACAAGAAGTCATTGTAACTTCCACATCAATGATGTTCACTTGCCAACAGATTGCTCTTAGTTTCCCTCAAGGTACTACTTCTATTAAGTGTACAAACCAAGAATTTCAAAAGCAACAATCTAATATTCAATCAAATTTTGGCAACAATGACACAAACATTGATCTTAGAGGTCAAAGCATATTTTCTAATAATGAGTCAGAACCATTGGATTGGTTTGGTGAAAGCTATAATAGTAACATTAATTATAGGCTCAAGGATGATATTGATGATCAAAGGGTTGATCATGAAATTAGCGAAACCAATAATAGTATAAGAGGGTCTAATGAAGATATTTCAACGAAGAATAATTCTGATCGTGACGATACATGCTTAAAATTTGGGTCATCTTATAATTGGGTCGGCCCAAAATGTGACAATGAGATAGTTGAATTGGACGCGGCTGATTTATTAGCCAAGTACACACATTATTGTCAAGTTTGTGGCAAAGGGTTCAAGAGGGATGCAAATTTGAGGATGCATATGAGAGCTCATGGGGATGAGTACAAGAGCAGTGCAGCATTGAGCAATCCAATTACTAAGAATAGAGATTATTTGATGAGTATGAAAAATAAGAAATATTCATGTCCTCAAGAAGGGTGTAGATGGAACCAAAAACATGCCAAGTTTCAACCTTTGAAGTCATTGATTTGTGCTAAGAATCATTACAAGAGAAGTCATTGTCCCAAAATGTATGTATGCAAGAGGTGTAATTTGAAGCAATTTTCGGTTCTTTCTGATTTGAGGACACATGAGAAACATTGTGGTGATCTTAGGTGGCAGTGTTCATGTGGCACTACCTTTTCTAGGAAAGATAAGCTTATGGGACATGTTGGTTTGTTTGTGGGACATCACCCGGTTATCAATGGTTTGTCATATAGTACTCTCACAAGTTAG

Protein sequence

>MsaT010078.1

MMSRTTPLGFEIENQGLQMFPMVTEDLMPLPNSMEGISSSTLPSNSLLFNLSTLKDKLNQVQTLVGVILSPNQQDSSTSMALSTMNSTIQEVIVTSTSMMFTCQQIALSFPQGTTSIKCTNQEFQKQQSNIQSNFGNNDTNIDLRGQSIFSNNESEPLDWFGESYNSNINYRLKDDIDDQRVDHEISETNNSIRGSNEDISTKNNSDRDDTCLKFGSSYNWVGPKCDNEIVELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKSSAALSNPITKNRDYLMSMKNKKYSCPQEGCRWNQKHAKFQPLKSLICAKNHYKRSHCPKMYVCKRCNLKQFSVLSDLRTHEKHCGDLRWQCSCGTTFSRKDKLMGHVGLFVGHHPVINGLSYSTLTS*