AlfalfaGEDB | MsaG010106

M. sativa ssp. caerulea / MsaG010106

KEGG: -
GO: -
PFAM: PF04640.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010106	RHN75377.1	91.176	238	15	1	1	238	1	232	1.15e-145	416

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010106	sp\|Q1G3Q4\|RITF1_ARATH	38.571	140	75	5	8	147	8	136	1.63e-20	90.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010106	tr\|A0A396JJY5\|A0A396JJY5_MEDTR	91.176	238	15	1	1	238	1	232	5.48e-146	416

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TFs/TRs:

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Gene ID	Type	Classification
MsaG010106	TF	PLATZ

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010106	MtrunA17_Chr2g0320521	91.176	238	15	1	1	238	1	232	1.05e-149	416
MsaG010106	MtrunA17_Chr2g0320561	61.224	245	84	3	3	238	1	243	1.36e-90	267
MsaG010106	MtrunA17_Chr4g0020811	67.105	152	50	0	1	152	1	152	1.88e-69	210
MsaG010106	MtrunA17_Chr2g0308401	66.000	150	51	0	3	152	1	150	6.25e-67	204
MsaG010106	MtrunA17_Chr2g0320551	58.940	151	61	1	3	153	1	150	1.04e-58	183
MsaG010106	MtrunA17_Chr1g0179781	40.081	247	92	8	1	237	1	201	2.23e-49	160
MsaG010106	MtrunA17_Chr7g0265291	41.152	243	96	11	1	237	1	202	2.86e-44	147
MsaG010106	MtrunA17_Chr5g0411151	36.364	242	106	7	2	237	31	230	9.71e-41	139
MsaG010106	MtrunA17_Chr5g0395181	35.169	236	108	5	2	237	17	207	7.23e-40	136
MsaG010106	MtrunA17_Chr4g0040071	34.335	233	115	6	5	237	14	208	3.17e-38	132

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010106	AT1G43000.1	37.083	240	119	7	2	237	5	216	7.00e-46	152
MsaG010106	AT1G43000.2	37.083	240	119	7	2	237	12	223	7.94e-46	152
MsaG010106	AT1G21000.2	35.366	246	138	8	2	237	9	243	1.05e-40	140
MsaG010106	AT1G21000.1	35.366	246	138	8	2	237	12	246	1.20e-40	140
MsaG010106	AT1G76590.1	35.565	239	134	7	7	237	19	245	1.52e-39	137
MsaG010106	AT4G17900.1	48.921	139	60	4	5	142	33	161	4.35e-38	132
MsaG010106	AT1G32700.1	47.857	140	63	3	8	147	14	143	1.33e-37	131
MsaG010106	AT4G17900.2	48.921	139	60	4	5	142	19	147	1.43e-37	131
MsaG010106	AT2G27930.1	46.763	139	68	3	8	143	6	141	7.86e-36	125
MsaG010106	AT2G27930.4	46.763	139	68	3	8	143	6	141	7.86e-36	125

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Find 34 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCAAATTCAAGAAGAA+AGG	0.446839	2:-68793794	MsaT010106.1:CDS
AACTTCACATGATGTGAAGA+AGG	0.546693	2:+68794878	None:intergenic
AAGAAAGGGAATACCTCGTA+GGG	0.554824	2:-68793779	MsaT010106.1:CDS
AAGAAGACGATAGGTATAAT+TGG	0.364201	2:-68794433	MsaT010106.1:CDS
AAGCCAAATTCAAGAAGAAA+GGG	0.497702	2:-68793793	MsaT010106.1:CDS
AATCGAAAATTAAATGAAGC+AGG	0.499594	2:-68793907	MsaT010106.1:CDS
AATCGAAATTTACAAGCATT+TGG	0.312437	2:-68794536	MsaT010106.1:CDS
AGAAATGGAAAGATTGTTGG+AGG	0.534953	2:-68793983	MsaT010106.1:CDS
AGAAGAAATGGAAAGATTGT+TGG	0.417250	2:-68793986	MsaT010106.1:CDS
AGGATATGATGTTCGTGCCC+TGG	0.529076	2:-68794926	MsaT010106.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	68793765	68795029	68793765	ID=MsaG010106
Chr2	mRNA	68793765	68795029	68793765	ID=MsaT010106.1;Parent=MsaG010106
Chr2	exon	68793765	68794058	68793765	ID=MsaT010106.1.exon4;Parent=MsaT010106.1
Chr2	CDS	68793765	68794058	68793765	ID=cds.MsaT010106.1;Parent=MsaT010106.1
Chr2	exon	68794354	68794593	68794354	ID=MsaT010106.1.exon3;Parent=MsaT010106.1
Chr2	CDS	68794354	68794593	68794354	ID=cds.MsaT010106.1;Parent=MsaT010106.1
Chr2	exon	68794767	68794946	68794767	ID=MsaT010106.1.exon2;Parent=MsaT010106.1
Chr2	CDS	68794767	68794946	68794767	ID=cds.MsaT010106.1;Parent=MsaT010106.1
Chr2	exon	68795027	68795029	68795027	ID=MsaT010106.1.exon1;Parent=MsaT010106.1
Chr2	CDS	68795027	68795029	68795027	ID=cds.MsaT010106.1;Parent=MsaT010106.1

Gene Sequence

>MsaT010106.1

ATGGATATGATGTTCGTGCCCTGGCTCAAAAATTTGCTTGCAATCACGGCCTTCTTCACATCATGTGAAGTTCATCGGAATGAGTCAAAAAATGAACGCAACATGTTCTGTCTCGAATGCAATGACAATCCATTTTGTGGATCTTGCATAAATTCTCATCACAAAGATCATCGAGTAATCCAAGTGAGGAGATCATCTTATACAAACGTCATTAAGACAATCGAAATTTACAAGCATTTGGATATTCTAGGAATCCAAACCTATGTGATTAGCAACTTTACAGTTGTATTCATAAACAAGAGGCCTTATTCCCAACCTACGAAGAAGACGATAGGTATAATTGGTTGCAGTAGCGACTATCTTTGTAAGATATGTCAAAGGAATCTTGTAGGACCTTATTACTTTTGCTCTCTGGCATGCAAGTTTGAATGCATAAAGAAGGATGGGGGCTTTTTCCTAAGTGCAAAGGAGACAGAAGAAATGGAAAGATTGTTGGAGGAATCAATCAAGGCACCAAAACAAAAAGCCAAAAAATCGCGTGAACAAAATCTAAATCGAAAATTAAATGAAGCAGGAATCAACAATGAAGAAAACGAAGAGAATGAAGAAAAAAGGGAGGAAGAAGAAAATGAACAAGAAAAAAGAGAAAACATGCTTCCTATCAAAAAGCCAAATTCAAGAAGAAAGGGAATACCTCGTAGGGCACCCTTTTTTTAA

Protein sequence

>MsaT010106.1

MDMMFVPWLKNLLAITAFFTSCEVHRNESKNERNMFCLECNDNPFCGSCINSHHKDHRVIQVRRSSYTNVIKTIEIYKHLDILGIQTYVISNFTVVFINKRPYSQPTKKTIGIIGCSSDYLCKICQRNLVGPYYFCSLACKFECIKKDGGFFLSAKETEEMERLLEESIKAPKQKAKKSREQNLNRKLNEAGINNEENEENEEKREEEENEQEKRENMLPIKKPNSRRKGIPRRAPFF*