AlfalfaGEDB | MsaG010147

M. sativa ssp. caerulea / MsaG010147

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010147	XP_039690635.1	73.461	731	166	3	1	714	1	720	0.0	1132

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010147	sp\|Q9SZL8\|FRS5_ARATH	32.206	562	352	8	93	628	79	637	6.66e-88	296

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010147	tr\|A0A396JU01\|A0A396JU01_MEDTR	62.321	629	212	3	1	612	1	621	0.0	815

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TFs/TRs:

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Gene ID	Type	Classification
MsaG010147	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010147	MtrunA17_Chr1g0203051	62.321	629	212	3	1	612	1	621	0.0	815
MsaG010147	MtrunA17_Chr2g0287651	38.021	576	336	4	70	625	58	632	8.56e-136	422
MsaG010147	MtrunA17_Chr5g0448761	31.010	574	367	7	93	638	66	638	1.63e-90	300
MsaG010147	MtrunA17_Chr1g0202341	29.982	557	350	9	99	625	63	609	2.06e-81	273
MsaG010147	MtrunA17_Chr2g0324011	28.339	554	369	8	99	628	22	571	3.60e-72	246
MsaG010147	MtrunA17_Chr8g0363841	27.928	555	372	8	99	628	29	580	7.84e-72	247
MsaG010147	MtrunA17_Chr1g0198761	27.074	687	447	18	99	744	59	732	1.20e-68	240
MsaG010147	MtrunA17_Chr1g0207551	30.536	560	352	14	93	625	40	589	3.95e-67	237
MsaG010147	MtrunA17_Chr6g0458391	28.036	560	339	12	99	625	237	765	1.63e-66	234
MsaG010147	MtrunA17_Chr6g0458391	23.913	276	178	8	12	261	20	289	4.65e-14	76.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010147	AT4G38180.1	32.206	562	352	8	93	628	79	637	6.77e-89	296
MsaG010147	AT4G15090.1	28.292	562	375	9	93	630	57	614	2.58e-70	246
MsaG010147	AT4G15090.5	28.292	562	375	9	93	630	57	614	2.58e-70	246
MsaG010147	AT4G15090.3	28.292	562	375	9	93	630	57	614	2.58e-70	246
MsaG010147	AT4G15090.2	28.292	562	375	9	93	630	57	614	2.58e-70	246
MsaG010147	AT4G15090.4	28.292	562	375	9	93	630	57	614	2.58e-70	246
MsaG010147	AT3G06250.2	28.545	550	329	13	99	628	202	707	6.50e-64	228
MsaG010147	AT3G06250.1	28.545	550	329	13	99	628	202	707	6.50e-64	228
MsaG010147	AT3G06250.3	28.545	550	329	13	99	628	202	707	6.50e-64	228
MsaG010147	AT3G22170.2	27.051	573	348	12	93	625	76	618	1.84e-62	225

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Find 148 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTGGAATCATTAAGC+AGG	0.500216	2:-69249125	MsaT010147.1:CDS
AAACCATAGATGCGTGACGT+AGG	0.642746	2:+69250557	None:intergenic
AAACTGAGGACACTTACGTG+TGG	0.737471	2:-69250172	MsaT010147.1:CDS
AAAGTTGTGTTGTTAAGAAC+AGG	0.323586	2:-69250868	MsaT010147.1:CDS
AAAGTTTAGGTAATCCGCAA+CGG	0.615547	2:-69249059	MsaT010147.1:CDS
AACATTGGAATCATTAAGCA+GGG	0.567060	2:-69249124	MsaT010147.1:CDS
AACTACGTATGTGATGTTTG+TGG	0.557581	2:-69249238	MsaT010147.1:CDS
AACTAGTAGGTGTGGTTGCA+TGG	0.492607	2:-69250753	MsaT010147.1:CDS
AAGTTCAAACGGTGTATGCT+CGG	0.521054	2:-69249969	MsaT010147.1:CDS
AAGTTGTGTTGTTAAGAACA+GGG	0.621388	2:-69250867	MsaT010147.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	69248550	69251354	69248550	ID=MsaG010147
Chr2	mRNA	69248550	69251354	69248550	ID=MsaT010147.1;Parent=MsaG010147
Chr2	exon	69248550	69248555	69248550	ID=MsaT010147.1.exon5;Parent=MsaT010147.1
Chr2	CDS	69248550	69248555	69248550	ID=cds.MsaT010147.1;Parent=MsaT010147.1
Chr2	exon	69248837	69248905	69248837	ID=MsaT010147.1.exon4;Parent=MsaT010147.1
Chr2	CDS	69248837	69248905	69248837	ID=cds.MsaT010147.1;Parent=MsaT010147.1
Chr2	exon	69249014	69249836	69249014	ID=MsaT010147.1.exon3;Parent=MsaT010147.1
Chr2	CDS	69249014	69249836	69249014	ID=cds.MsaT010147.1;Parent=MsaT010147.1
Chr2	exon	69249882	69251140	69249882	ID=MsaT010147.1.exon2;Parent=MsaT010147.1
Chr2	CDS	69249882	69251140	69249882	ID=cds.MsaT010147.1;Parent=MsaT010147.1
Chr2	exon	69251259	69251354	69251259	ID=MsaT010147.1.exon1;Parent=MsaT010147.1
Chr2	CDS	69251259	69251354	69251259	ID=cds.MsaT010147.1;Parent=MsaT010147.1

Gene Sequence

>MsaT010147.1

ATGGATATTCATGAAATTCTAGAAATTTTCGGAATTCCCAATGTAAGCGACATAACTGGGGGATGCAACCTTAATGCGGAAGGTTCAGAGGTAGAGGACATGGACAATAGCTCTCGTTCGGAGAGTGATGTATGTTCCTCGGATGAAGATGTCGAAGACATGTACAGTTCGTTGTATGGGTGCAACTTTGACGATGAAACGGCGGTTGATTGCATGGCTGACCTTGACAGAATTAATTTTAAGGAAATAGGGTCGGATGAAATCATGAGGTACCATTTTCAGGATCGTTTAGTTGCATTCAAGTTTTACAATTTGTACGGTTGTGTACGTGGATTTTCTGGTAGAAAAAGTTGTGTTGTTAAGAACAGGGATGGCGATGTTGTTCAACAAACCTTTGTTTGTCATAGAGAAGGTTACAGGGTTGAAAGTAATGCCGCCGATAGGAAAAGAGAGCAGAAGCCAACTAGTAGGTGTGGTTGCATGGCAAAAATTCAAGTACACGTTGACGCTGGTAGCGGTCGATGGTACATAAAATCAGTTGACGATATTCACAATCACACCTTTTTGGATGGGAAGTATCAGGGAATGCTACCTGCACATAGGAATATGAGCGATTATGACAAATACCAAATGAAAATGATGAGGAAAGCTGGCATTCCTACGTCACGCATCTATGGTTTTTTTGCTTCACAGGCTGGTGGATTTAAAAATCTTGGATATACAAGAAGAGACATGTACAACGAGCAATTCAAGAACAGGGAGAGGAAGAGTACAGATGCAGAGGATGCAATTGATTTCCTTAAGGGTTTGTGTAGTACAAATGATATGATGTTTTGGAGGCACACAGTTAAAGAGGATGGAACACTTCGACATTTATTTTGGTGTGATGGGGTTAGCCGTATGGACTACTCGGTGTTCGGAGATGTTTTGGCATTTGATGCTACATATCGAAAAATTAAGTACAACACATCGTTAGTTATTTTTTCCGGTGTGAACCATCATAATCAAAGTGTCATATTCGGTAGTGCGATTGTTGGTGATGAAACTGAGGACACTTACGTGTGGCTGCTGCAACAATTTCTTAAGGCAATGGGCGGGAAGGCACCTGTGTCAGTTATAATTGACGGAGATCTATCAATGAGAAATGCAATTAGAAGAGTATTTCCACATGCTCATCACCGTTTGTGTGCCTGGCACTTGGCTAGAAATGCAACGAACAATATAAAAAATCCAAAATTTGTCCCGAAGTTCAAACGGTGTATGCTCGGTGATTTTGATATTGAAGAGTTTGAAACTATGTGGGATTTGTTGGTTGCAGAGTTTGGGTTGGAAAATAATAAGTGGATTCGTGAGCTATTTTATGCTGGTTTCAGAACAACCTCAAGGTGTGAAGGTCTTCACTCTGAATTTGGAAAATATGTTACCGTCTTGTCGAATTTGGTGGATTTTTTACAGCATCTTTTGCGGTGGCTGAATTATGTTAGATACAGAGAAATTGAGGCGGATTATGCATCTTCTTTTGGTGAACCCGTTTTGCAAACTCAGCACAAAAAATTAGAGAAGTCAGCTTCAAAAATTTATACAAGGTCAGTGTTTAAACAGTTTAGGCCCGTATTGGAGAGATCTTGTCGGTGCAAAGTCGAAGGTGATGTGCGTAGTGGTTCCATTTTTACCTATAATGTTTTCAAATACCCTAAGAATGATATTCATTGGATCGTGACATTTTGCCAAGAACGGTTGACATTTAAATGTTCATGCAAAAGATTTGAGACATTTGGTATTCCTTGTGAACATATCTTACATGTTCTAGTGCATTTGAACATTGTTGTACTGCCAGAATGTCTCGTGATGGAACGATGGACCAAACGTGCTAAAGATGGAATCAATGCTCAAAATGCTAATAGTTCAAGTCACCGTGATCCTGCATTTGTAACTACGTATGTGATGTTTGTGGAGCGATGTAAGAGGATGGCCAATGCCGTGTTGAAGTGTGGAGATCCTGAATATATACACAAAACCATGGAAATGGTTGAAAAACACACCGAAACATTGGAATCATTAAGCAGGGGTGAAGTTGATGAATTGCCCGTGGTCGGTTCAGTGACAGAAAAAAGTTTAGGTAATCCGCAACGGCTTAAGAAAAGAGGTGGAGCAGCAGCTGCGTCGTCATCTCGTAATAATCATTCATCACATATCAATGATGATCAAGGGTATGATGAAGACTCGGAAGATTGGAACACACCCATGGCGTGA

Protein sequence

>MsaT010147.1

MDIHEILEIFGIPNVSDITGGCNLNAEGSEVEDMDNSSRSESDVCSSDEDVEDMYSSLYGCNFDDETAVDCMADLDRINFKEIGSDEIMRYHFQDRLVAFKFYNLYGCVRGFSGRKSCVVKNRDGDVVQQTFVCHREGYRVESNAADRKREQKPTSRCGCMAKIQVHVDAGSGRWYIKSVDDIHNHTFLDGKYQGMLPAHRNMSDYDKYQMKMMRKAGIPTSRIYGFFASQAGGFKNLGYTRRDMYNEQFKNRERKSTDAEDAIDFLKGLCSTNDMMFWRHTVKEDGTLRHLFWCDGVSRMDYSVFGDVLAFDATYRKIKYNTSLVIFSGVNHHNQSVIFGSAIVGDETEDTYVWLLQQFLKAMGGKAPVSVIIDGDLSMRNAIRRVFPHAHHRLCAWHLARNATNNIKNPKFVPKFKRCMLGDFDIEEFETMWDLLVAEFGLENNKWIRELFYAGFRTTSRCEGLHSEFGKYVTVLSNLVDFLQHLLRWLNYVRYREIEADYASSFGEPVLQTQHKKLEKSASKIYTRSVFKQFRPVLERSCRCKVEGDVRSGSIFTYNVFKYPKNDIHWIVTFCQERLTFKCSCKRFETFGIPCEHILHVLVHLNIVVLPECLVMERWTKRAKDGINAQNANSSSHRDPAFVTTYVMFVERCKRMANAVLKCGDPEYIHKTMEMVEKHTETLESLSRGEVDELPVVGSVTEKSLGNPQRLKKRGGAAAASSSRNNHSSHINDDQGYDEDSEDWNTPMA*