Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010147 | XP_039690635.1 | 73.461 | 731 | 166 | 3 | 1 | 714 | 1 | 720 | 0.0 | 1132 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010147 | sp|Q9SZL8|FRS5_ARATH | 32.206 | 562 | 352 | 8 | 93 | 628 | 79 | 637 | 6.66e-88 | 296 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010147 | tr|A0A396JU01|A0A396JU01_MEDTR | 62.321 | 629 | 212 | 3 | 1 | 612 | 1 | 621 | 0.0 | 815 |
Gene ID | Type | Classification |
---|---|---|
MsaG010147 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010147 | MtrunA17_Chr1g0203051 | 62.321 | 629 | 212 | 3 | 1 | 612 | 1 | 621 | 0.0 | 815 |
MsaG010147 | MtrunA17_Chr2g0287651 | 38.021 | 576 | 336 | 4 | 70 | 625 | 58 | 632 | 8.56e-136 | 422 |
MsaG010147 | MtrunA17_Chr5g0448761 | 31.010 | 574 | 367 | 7 | 93 | 638 | 66 | 638 | 1.63e-90 | 300 |
MsaG010147 | MtrunA17_Chr1g0202341 | 29.982 | 557 | 350 | 9 | 99 | 625 | 63 | 609 | 2.06e-81 | 273 |
MsaG010147 | MtrunA17_Chr2g0324011 | 28.339 | 554 | 369 | 8 | 99 | 628 | 22 | 571 | 3.60e-72 | 246 |
MsaG010147 | MtrunA17_Chr8g0363841 | 27.928 | 555 | 372 | 8 | 99 | 628 | 29 | 580 | 7.84e-72 | 247 |
MsaG010147 | MtrunA17_Chr1g0198761 | 27.074 | 687 | 447 | 18 | 99 | 744 | 59 | 732 | 1.20e-68 | 240 |
MsaG010147 | MtrunA17_Chr1g0207551 | 30.536 | 560 | 352 | 14 | 93 | 625 | 40 | 589 | 3.95e-67 | 237 |
MsaG010147 | MtrunA17_Chr6g0458391 | 28.036 | 560 | 339 | 12 | 99 | 625 | 237 | 765 | 1.63e-66 | 234 |
MsaG010147 | MtrunA17_Chr6g0458391 | 23.913 | 276 | 178 | 8 | 12 | 261 | 20 | 289 | 4.65e-14 | 76.3 |
MsaG010147 | MtrunA17_Chr5g0441581 | 28.339 | 554 | 350 | 12 | 102 | 625 | 47 | 583 | 4.00e-66 | 232 |
MsaG010147 | MtrunA17_Chr3g0082121 | 28.305 | 590 | 362 | 11 | 78 | 629 | 28 | 594 | 1.15e-65 | 231 |
MsaG010147 | MtrunA17_Chr2g0287061 | 28.381 | 599 | 346 | 16 | 78 | 640 | 165 | 716 | 4.92e-65 | 231 |
MsaG010147 | MtrunA17_Chr5g0448511 | 31.266 | 387 | 245 | 3 | 262 | 628 | 15 | 400 | 7.57e-64 | 222 |
MsaG010147 | MtrunA17_Chr2g0329031 | 28.597 | 563 | 349 | 14 | 93 | 624 | 20 | 560 | 1.01e-62 | 223 |
MsaG010147 | MtrunA17_Chr1g0203721 | 27.978 | 554 | 371 | 8 | 99 | 627 | 75 | 625 | 2.96e-60 | 219 |
MsaG010147 | MtrunA17_Chr2g0296781 | 28.237 | 556 | 358 | 11 | 101 | 625 | 11 | 556 | 1.59e-59 | 214 |
MsaG010147 | MtrunA17_Chr3g0080351 | 27.690 | 567 | 351 | 11 | 93 | 625 | 82 | 623 | 8.01e-59 | 214 |
MsaG010147 | MtrunA17_Chr3g0118611 | 31.323 | 431 | 268 | 8 | 250 | 658 | 110 | 534 | 1.52e-57 | 209 |
MsaG010147 | MtrunA17_Chr2g0308841 | 40.265 | 226 | 120 | 1 | 414 | 624 | 1 | 226 | 1.09e-54 | 189 |
MsaG010147 | MtrunA17_Chr5g0440451 | 25.217 | 575 | 359 | 12 | 99 | 626 | 55 | 605 | 3.29e-54 | 201 |
MsaG010147 | MtrunA17_Chr6g0477261 | 29.688 | 448 | 281 | 9 | 208 | 625 | 2 | 445 | 5.24e-54 | 197 |
MsaG010147 | MtrunA17_Chr2g0290391 | 26.215 | 576 | 373 | 13 | 99 | 636 | 63 | 624 | 1.03e-52 | 194 |
MsaG010147 | MtrunA17_Chr5g0431001 | 28.744 | 414 | 263 | 8 | 93 | 474 | 67 | 480 | 4.53e-48 | 177 |
MsaG010147 | MtrunA17_Chr2g0291591 | 29.293 | 495 | 302 | 17 | 99 | 561 | 76 | 554 | 2.18e-47 | 177 |
MsaG010147 | MtrunA17_Chr2g0276841 | 23.944 | 568 | 367 | 17 | 98 | 622 | 81 | 626 | 1.93e-45 | 173 |
MsaG010147 | MtrunA17_Chr2g0294841 | 24.956 | 565 | 375 | 16 | 93 | 620 | 51 | 603 | 6.23e-45 | 172 |
MsaG010147 | MtrunA17_Chr1g0196541 | 26.455 | 567 | 370 | 14 | 93 | 625 | 3 | 556 | 1.21e-42 | 165 |
MsaG010147 | MtrunA17_Chr2g0291581 | 25.000 | 564 | 361 | 14 | 99 | 625 | 83 | 621 | 3.93e-42 | 163 |
MsaG010147 | MtrunA17_Chr8g0389811 | 46.377 | 138 | 72 | 1 | 61 | 196 | 58 | 195 | 3.76e-40 | 146 |
MsaG010147 | MtrunA17_Chr1g0164591 | 28.618 | 304 | 183 | 6 | 166 | 453 | 3 | 288 | 3.92e-34 | 133 |
MsaG010147 | MtrunA17_Chr7g0258861 | 29.181 | 281 | 193 | 4 | 99 | 374 | 22 | 301 | 3.70e-33 | 130 |
MsaG010147 | MtrunA17_Chr8g0340801 | 48.598 | 107 | 55 | 0 | 196 | 302 | 1 | 107 | 5.62e-31 | 117 |
MsaG010147 | MtrunA17_Chr1g0171741 | 34.518 | 197 | 120 | 4 | 23 | 215 | 71 | 262 | 6.15e-27 | 110 |
MsaG010147 | MtrunA17_Chr2g0331371 | 39.844 | 128 | 75 | 1 | 68 | 193 | 36 | 163 | 6.77e-27 | 108 |
MsaG010147 | MtrunA17_Chr6g0473421 | 41.053 | 95 | 54 | 1 | 68 | 160 | 36 | 130 | 6.59e-22 | 92.8 |
MsaG010147 | MtrunA17_Chr1g0172931 | 40.909 | 110 | 63 | 1 | 60 | 167 | 49 | 158 | 5.45e-18 | 81.6 |
MsaG010147 | MtrunA17_Chr7g0228051 | 51.471 | 68 | 30 | 1 | 32 | 96 | 18 | 85 | 3.47e-12 | 63.2 |
MsaG010147 | MtrunA17_Chr1g0149131 | 32.632 | 95 | 59 | 1 | 364 | 453 | 1 | 95 | 3.46e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010147 | AT4G38180.1 | 32.206 | 562 | 352 | 8 | 93 | 628 | 79 | 637 | 6.77e-89 | 296 |
MsaG010147 | AT4G15090.1 | 28.292 | 562 | 375 | 9 | 93 | 630 | 57 | 614 | 2.58e-70 | 246 |
MsaG010147 | AT4G15090.5 | 28.292 | 562 | 375 | 9 | 93 | 630 | 57 | 614 | 2.58e-70 | 246 |
MsaG010147 | AT4G15090.3 | 28.292 | 562 | 375 | 9 | 93 | 630 | 57 | 614 | 2.58e-70 | 246 |
MsaG010147 | AT4G15090.2 | 28.292 | 562 | 375 | 9 | 93 | 630 | 57 | 614 | 2.58e-70 | 246 |
MsaG010147 | AT4G15090.4 | 28.292 | 562 | 375 | 9 | 93 | 630 | 57 | 614 | 2.58e-70 | 246 |
MsaG010147 | AT3G06250.2 | 28.545 | 550 | 329 | 13 | 99 | 628 | 202 | 707 | 6.50e-64 | 228 |
MsaG010147 | AT3G06250.1 | 28.545 | 550 | 329 | 13 | 99 | 628 | 202 | 707 | 6.50e-64 | 228 |
MsaG010147 | AT3G06250.3 | 28.545 | 550 | 329 | 13 | 99 | 628 | 202 | 707 | 6.50e-64 | 228 |
MsaG010147 | AT3G22170.2 | 27.051 | 573 | 348 | 12 | 93 | 625 | 76 | 618 | 1.84e-62 | 225 |
MsaG010147 | AT3G22170.1 | 27.051 | 573 | 348 | 12 | 93 | 625 | 76 | 618 | 1.84e-62 | 225 |
MsaG010147 | AT5G18960.2 | 29.189 | 555 | 322 | 15 | 99 | 628 | 223 | 731 | 9.18e-62 | 222 |
MsaG010147 | AT5G18960.1 | 29.189 | 555 | 322 | 15 | 99 | 628 | 223 | 731 | 9.18e-62 | 222 |
MsaG010147 | AT2G27110.2 | 26.405 | 587 | 373 | 14 | 82 | 639 | 43 | 599 | 1.59e-60 | 219 |
MsaG010147 | AT2G27110.1 | 26.405 | 587 | 373 | 14 | 82 | 639 | 43 | 599 | 1.59e-60 | 219 |
MsaG010147 | AT1G76320.3 | 27.405 | 551 | 363 | 10 | 99 | 626 | 9 | 545 | 3.64e-59 | 213 |
MsaG010147 | AT1G76320.2 | 27.405 | 551 | 363 | 10 | 99 | 626 | 9 | 545 | 5.90e-59 | 213 |
MsaG010147 | AT1G76320.1 | 27.405 | 551 | 363 | 10 | 99 | 626 | 9 | 545 | 6.43e-59 | 213 |
MsaG010147 | AT1G76320.4 | 27.405 | 551 | 363 | 10 | 99 | 626 | 9 | 545 | 6.43e-59 | 213 |
MsaG010147 | AT2G27110.3 | 30.179 | 391 | 248 | 6 | 259 | 628 | 51 | 437 | 1.87e-56 | 206 |
MsaG010147 | AT5G28530.3 | 27.461 | 579 | 357 | 18 | 99 | 634 | 67 | 625 | 2.22e-54 | 199 |
MsaG010147 | AT5G28530.2 | 27.461 | 579 | 357 | 18 | 99 | 634 | 67 | 625 | 2.22e-54 | 199 |
MsaG010147 | AT5G28530.1 | 27.539 | 581 | 358 | 18 | 99 | 634 | 67 | 629 | 3.05e-54 | 199 |
MsaG010147 | AT4G38170.1 | 30.618 | 356 | 225 | 4 | 291 | 625 | 45 | 399 | 1.63e-52 | 191 |
MsaG010147 | AT1G80010.1 | 27.622 | 572 | 352 | 15 | 99 | 625 | 107 | 661 | 6.97e-51 | 190 |
MsaG010147 | AT2G32250.6 | 26.770 | 452 | 295 | 10 | 277 | 701 | 187 | 629 | 2.23e-48 | 184 |
MsaG010147 | AT2G32250.1 | 26.770 | 452 | 295 | 10 | 277 | 701 | 187 | 629 | 2.23e-48 | 184 |
MsaG010147 | AT2G32250.3 | 26.770 | 452 | 295 | 10 | 277 | 701 | 187 | 629 | 2.23e-48 | 184 |
MsaG010147 | AT2G32250.2 | 26.770 | 452 | 295 | 10 | 277 | 701 | 187 | 629 | 2.31e-48 | 183 |
MsaG010147 | AT2G32250.4 | 26.770 | 452 | 295 | 10 | 277 | 701 | 187 | 629 | 2.31e-48 | 183 |
MsaG010147 | AT2G32250.8 | 26.770 | 452 | 295 | 10 | 277 | 701 | 146 | 588 | 2.61e-48 | 183 |
MsaG010147 | AT2G32250.5 | 26.770 | 452 | 295 | 10 | 277 | 701 | 187 | 629 | 2.74e-48 | 183 |
MsaG010147 | AT2G32250.7 | 26.770 | 452 | 295 | 10 | 277 | 701 | 146 | 588 | 2.76e-48 | 183 |
MsaG010147 | AT4G19990.5 | 25.439 | 570 | 351 | 13 | 93 | 625 | 27 | 559 | 2.54e-47 | 180 |
MsaG010147 | AT4G19990.3 | 25.439 | 570 | 351 | 13 | 93 | 625 | 27 | 559 | 3.04e-47 | 179 |
MsaG010147 | AT4G19990.4 | 25.439 | 570 | 351 | 13 | 93 | 625 | 27 | 559 | 3.04e-47 | 179 |
MsaG010147 | AT4G19990.7 | 25.439 | 570 | 351 | 13 | 93 | 625 | 41 | 573 | 3.48e-47 | 179 |
MsaG010147 | AT4G19990.6 | 25.439 | 570 | 351 | 13 | 93 | 625 | 27 | 559 | 3.71e-47 | 179 |
MsaG010147 | AT4G19990.2 | 25.439 | 570 | 351 | 13 | 93 | 625 | 27 | 559 | 3.71e-47 | 179 |
MsaG010147 | AT1G10240.2 | 25.260 | 578 | 379 | 19 | 98 | 638 | 59 | 620 | 7.38e-46 | 175 |
MsaG010147 | AT1G10240.1 | 25.260 | 578 | 379 | 19 | 98 | 638 | 59 | 620 | 7.38e-46 | 175 |
MsaG010147 | AT4G19990.1 | 25.326 | 537 | 328 | 12 | 125 | 625 | 3 | 502 | 2.22e-44 | 171 |
MsaG010147 | AT1G52520.1 | 25.933 | 563 | 360 | 14 | 99 | 625 | 97 | 638 | 9.46e-44 | 169 |
MsaG010147 | AT5G28530.5 | 25.397 | 567 | 321 | 19 | 99 | 634 | 67 | 562 | 3.02e-36 | 145 |
MsaG010147 | AT5G28530.4 | 25.483 | 569 | 322 | 19 | 99 | 634 | 67 | 566 | 3.68e-36 | 145 |
Find 148 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGAACTTCGGGACAAATTT+TGG | 0.120633 | 2:+69249984 | None:intergenic |
GAACACTTCGACATTTATTT+TGG | 0.173268 | 2:-69250355 | MsaT010147.1:CDS |
GAAGGTCTTCACTCTGAATT+TGG | 0.235885 | 2:-69249780 | MsaT010147.1:CDS |
TGTTACCGTCTTGTCGAATT+TGG | 0.240334 | 2:-69249751 | MsaT010147.1:CDS |
ATCCAATGAATATCATTCTT+AGG | 0.249372 | 2:+69249477 | None:intergenic |
CTCGGTGTTCGGAGATGTTT+TGG | 0.254426 | 2:-69250306 | MsaT010147.1:CDS |
ATTTAAATGTCAACCGTTCT+TGG | 0.283454 | 2:+69249442 | None:intergenic |
CAACTAAACGATCCTGAAAA+TGG | 0.285819 | 2:+69250942 | None:intergenic |
GCGGATTATGCATCTTCTTT+TGG | 0.297889 | 2:-69249669 | MsaT010147.1:CDS |
CCTCTGAACCTTCCGCATTA+AGG | 0.302211 | 2:+69251264 | None:intergenic |
CGTTCCATCACGAGACATTC+TGG | 0.305013 | 2:+69249336 | None:intergenic |
GATTTGTTGGTTGCAGAGTT+TGG | 0.306543 | 2:-69249912 | MsaT010147.1:CDS |
AAAGTTGTGTTGTTAAGAAC+AGG | 0.323586 | 2:-69250868 | MsaT010147.1:CDS |
TGCAAAAGATTTGAGACATT+TGG | 0.326462 | 2:-69249414 | MsaT010147.1:CDS |
AGGGTATTTGAAAACATTAT+AGG | 0.328540 | 2:+69249497 | None:intergenic |
GCTTAATGATTCCAATGTTT+CGG | 0.343715 | 2:+69249128 | None:intergenic |
CTGATACTTCCCATCCAAAA+AGG | 0.344955 | 2:+69250655 | None:intergenic |
GCATACACCGTTTGAACTTC+GGG | 0.346256 | 2:+69249973 | None:intergenic |
GATGCAATTGATTTCCTTAA+GGG | 0.353772 | 2:-69250431 | MsaT010147.1:CDS |
CCCAATGTAAGCGACATAAC+TGG | 0.364706 | 2:-69251296 | MsaT010147.1:CDS |
TTGTGCTGAGTTTGCAAAAC+GGG | 0.375014 | 2:+69249642 | None:intergenic |
ATTCCTACGTCACGCATCTA+TGG | 0.380981 | 2:-69250560 | MsaT010147.1:CDS |
ATTTGTTGGTTGCAGAGTTT+GGG | 0.383219 | 2:-69249911 | MsaT010147.1:CDS |
GATTCCATCTTTAGCACGTT+TGG | 0.386420 | 2:+69249308 | None:intergenic |
CTCATCACCGTTTGTGTGCC+TGG | 0.393277 | 2:-69250043 | MsaT010147.1:CDS |
GGTCAGTGTTTAAACAGTTT+AGG | 0.394434 | 2:-69249584 | MsaT010147.1:CDS |
GGATGCAATTGATTTCCTTA+AGG | 0.395881 | 2:-69250432 | MsaT010147.1:CDS |
TTTGTCATAGAGAAGGTTAC+AGG | 0.397074 | 2:-69250817 | MsaT010147.1:CDS |
GTACAAATGATATGATGTTT+TGG | 0.401855 | 2:-69250400 | MsaT010147.1:CDS |
ACCCTAAGAATGATATTCAT+TGG | 0.408328 | 2:-69249479 | MsaT010147.1:CDS |
TTGTACTACACAAACCCTTA+AGG | 0.414188 | 2:+69250417 | None:intergenic |
AGCATACACCGTTTGAACTT+CGG | 0.421787 | 2:+69249972 | None:intergenic |
TATACACAAAACCATGGAAA+TGG | 0.430787 | 2:-69249163 | MsaT010147.1:CDS |
CCCAGTTATGTCGCTTACAT+TGG | 0.430950 | 2:+69251295 | None:intergenic |
ATATGACACTTTGATTATGA+TGG | 0.433821 | 2:+69250219 | None:intergenic |
TAAACAGTTTAGGCCCGTAT+TGG | 0.437957 | 2:-69249574 | MsaT010147.1:CDS |
TGAAACTATGTGGGATTTGT+TGG | 0.439762 | 2:-69249925 | MsaT010147.1:CDS |
CAACAATTTCTTAAGGCAAT+GGG | 0.441409 | 2:-69250143 | MsaT010147.1:CDS |
CATAATCAAAGTGTCATATT+CGG | 0.442581 | 2:-69250215 | MsaT010147.1:CDS |
ATGATGAAGACTCGGAAGAT+TGG | 0.445167 | 2:-69248849 | MsaT010147.1:CDS |
ACAACGAGCAATTCAAGAAC+AGG | 0.446586 | 2:-69250478 | MsaT010147.1:CDS |
TCCAATGAATATCATTCTTA+GGG | 0.448741 | 2:+69249478 | None:intergenic |
GCTGCTGCAACAATTTCTTA+AGG | 0.452751 | 2:-69250150 | MsaT010147.1:CDS |
GACATGTACAGTTCGTTGTA+TGG | 0.455744 | 2:-69251058 | MsaT010147.1:CDS |
CCAGTTATGTCGCTTACATT+GGG | 0.461886 | 2:+69251296 | None:intergenic |
TACCGTCTTGTCGAATTTGG+TGG | 0.463178 | 2:-69249748 | MsaT010147.1:CDS |
CGTATGGACTACTCGGTGTT+CGG | 0.466575 | 2:-69250317 | MsaT010147.1:CDS |
TCACATATCAATGATGATCA+AGG | 0.468748 | 2:-69248874 | MsaT010147.1:CDS |
TTGGGTTGGAAAATAATAAG+TGG | 0.477062 | 2:-69249893 | MsaT010147.1:CDS |
CCAATGTAAGCGACATAACT+GGG | 0.477737 | 2:-69251295 | MsaT010147.1:CDS |
GCAACAATTTCTTAAGGCAA+TGG | 0.480229 | 2:-69250144 | MsaT010147.1:CDS |
TTGAAGAGTTTGAAACTATG+TGG | 0.492334 | 2:-69249935 | MsaT010147.1:CDS |
AACTAGTAGGTGTGGTTGCA+TGG | 0.492607 | 2:-69250753 | MsaT010147.1:CDS |
ATGAAAATGATGAGGAAAGC+TGG | 0.493711 | 2:-69250584 | MsaT010147.1:CDS |
AAACATTGGAATCATTAAGC+AGG | 0.500216 | 2:-69249125 | MsaT010147.1:CDS |
TTGGAGGCACACAGTTAAAG+AGG | 0.502132 | 2:-69250381 | MsaT010147.1:CDS |
GAGAGCAGAAGCCAACTAGT+AGG | 0.503280 | 2:-69250766 | MsaT010147.1:CDS |
TGCATTTCTAGCCAAGTGCC+AGG | 0.504434 | 2:+69250025 | None:intergenic |
TGAAGAGTTTGAAACTATGT+GGG | 0.510185 | 2:-69249934 | MsaT010147.1:CDS |
CCGTTTGTGTGCCTGGCACT+TGG | 0.510520 | 2:-69250036 | MsaT010147.1:CDS |
CCGACAAGATCTCTCCAATA+CGG | 0.513615 | 2:+69249560 | None:intergenic |
AAGTTCAAACGGTGTATGCT+CGG | 0.521054 | 2:-69249969 | MsaT010147.1:CDS |
GTGTGATGGGGTTAGCCGTA+TGG | 0.524800 | 2:-69250333 | MsaT010147.1:CDS |
CCTTAAAATTAATTCTGTCA+AGG | 0.525060 | 2:+69250993 | None:intergenic |
AATTTGTCCCGAAGTTCAAA+CGG | 0.526146 | 2:-69249980 | MsaT010147.1:CDS |
CATGGACAATAGCTCTCGTT+CGG | 0.530398 | 2:-69251116 | MsaT010147.1:CDS |
TGGACCAAACGTGCTAAAGA+TGG | 0.531683 | 2:-69249312 | MsaT010147.1:CDS |
TGCGGAAGGTTCAGAGGTAG+AGG | 0.537083 | 2:-69251258 | MsaT010147.1:intron |
ACCTTTGTTTGTCATAGAGA+AGG | 0.542041 | 2:-69250824 | MsaT010147.1:CDS |
TGTTAGATACAGAGAAATTG+AGG | 0.546396 | 2:-69249691 | MsaT010147.1:CDS |
GTGCAACTTTGACGATGAAA+CGG | 0.547511 | 2:-69251035 | MsaT010147.1:CDS |
TCCACACTTCAACACGGCAT+TGG | 0.549156 | 2:+69249197 | None:intergenic |
TCTGTCACTGAACCGACCAC+GGG | 0.550131 | 2:+69249084 | None:intergenic |
ACATGTACAGTTCGTTGTAT+GGG | 0.550841 | 2:-69251057 | MsaT010147.1:CDS |
TCGCTCATATTCCTATGTGC+AGG | 0.551020 | 2:+69250623 | None:intergenic |
ATGCAACCACACCTACTAGT+TGG | 0.551707 | 2:+69250755 | None:intergenic |
TTCTGTCACTGAACCGACCA+CGG | 0.554234 | 2:+69249083 | None:intergenic |
GTTGGTTGCAGAGTTTGGGT+TGG | 0.554814 | 2:-69249907 | MsaT010147.1:CDS |
AACTACGTATGTGATGTTTG+TGG | 0.557581 | 2:-69249238 | MsaT010147.1:CDS |
AATTTGTACGGTTGTGTACG+TGG | 0.562187 | 2:-69250905 | MsaT010147.1:CDS |
CCTGTGTCAGTTATAATTGA+CGG | 0.563332 | 2:-69250110 | MsaT010147.1:CDS |
ATATTCGGTAGTGCGATTGT+TGG | 0.564979 | 2:-69250200 | MsaT010147.1:CDS |
CCGTATTGGAGAGATCTTGT+CGG | 0.566564 | 2:-69249560 | MsaT010147.1:CDS |
AACATTGGAATCATTAAGCA+GGG | 0.567060 | 2:-69249124 | MsaT010147.1:CDS |
TTTGTGCTGAGTTTGCAAAA+CGG | 0.567191 | 2:+69249641 | None:intergenic |
GAGGAAGAGTACAGATGCAG+AGG | 0.570853 | 2:-69250453 | MsaT010147.1:CDS |
CCGCAACGGCTTAAGAAAAG+AGG | 0.575682 | 2:-69249045 | MsaT010147.1:CDS |
CCAAGTGCCAGGCACACAAA+CGG | 0.576385 | 2:+69250036 | None:intergenic |
CAACGGCTTAAGAAAAGAGG+TGG | 0.576611 | 2:-69249042 | MsaT010147.1:CDS |
ACATACGTAGTTACAAATGC+AGG | 0.577104 | 2:+69249249 | None:intergenic |
GGAGAGTGATGTATGTTCCT+CGG | 0.577170 | 2:-69251095 | MsaT010147.1:CDS |
TGAAACGGCGGTTGATTGCA+TGG | 0.577332 | 2:-69251020 | MsaT010147.1:CDS |
AGCAATTCAAGAACAGGGAG+AGG | 0.577733 | 2:-69250472 | MsaT010147.1:CDS |
CGACAAGATCTCTCCAATAC+GGG | 0.579381 | 2:+69249561 | None:intergenic |
TCTTAAGGCAATGGGCGGGA+AGG | 0.583388 | 2:-69250135 | MsaT010147.1:CDS |
CACATATCAATGATGATCAA+GGG | 0.585150 | 2:-69248873 | MsaT010147.1:CDS |
CAGAAGCCAACTAGTAGGTG+TGG | 0.587238 | 2:-69250761 | MsaT010147.1:CDS |
AATTTCTTAAGGCAATGGGC+GGG | 0.590362 | 2:-69250139 | MsaT010147.1:CDS |
CAATTTCTTAAGGCAATGGG+CGG | 0.591352 | 2:-69250140 | MsaT010147.1:CDS |
GTACACGTTGACGCTGGTAG+CGG | 0.591900 | 2:-69250719 | MsaT010147.1:CDS |
TTGACGCTGGTAGCGGTCGA+TGG | 0.592302 | 2:-69250712 | MsaT010147.1:CDS |
TGTGTTGTTAAGAACAGGGA+TGG | 0.595308 | 2:-69250863 | MsaT010147.1:CDS |
TGAATATATACACAAAACCA+TGG | 0.595738 | 2:-69249169 | MsaT010147.1:CDS |
CCTTAATGCGGAAGGTTCAG+AGG | 0.595778 | 2:-69251264 | MsaT010147.1:CDS |
GTGAAGACCTTCACACCTTG+AGG | 0.596000 | 2:+69249791 | None:intergenic |
AGGCACACAGTTAAAGAGGA+TGG | 0.598221 | 2:-69250377 | MsaT010147.1:CDS |
TTGAAAGTAATGCCGCCGAT+AGG | 0.598358 | 2:-69250793 | MsaT010147.1:CDS |
TTGTCATAGAGAAGGTTACA+GGG | 0.601328 | 2:-69250816 | MsaT010147.1:CDS |
GTTGATGAATTGCCCGTGGT+CGG | 0.602393 | 2:-69249096 | MsaT010147.1:CDS |
TCTTGTCGGTGCAAAGTCGA+AGG | 0.608632 | 2:-69249546 | MsaT010147.1:CDS |
GCCAATGCCGTGTTGAAGTG+TGG | 0.608683 | 2:-69249198 | MsaT010147.1:CDS |
ATCCACCAAATTCGACAAGA+CGG | 0.610939 | 2:+69249746 | None:intergenic |
GGATGCAACCTTAATGCGGA+AGG | 0.614546 | 2:-69251272 | MsaT010147.1:CDS |
AGGGAATGCTACCTGCACAT+AGG | 0.615340 | 2:-69250634 | MsaT010147.1:CDS |
AAAGTTTAGGTAATCCGCAA+CGG | 0.615547 | 2:-69249059 | MsaT010147.1:CDS |
ACCTTCTCTATGACAAACAA+AGG | 0.615884 | 2:+69250823 | None:intergenic |
AAGTTGTGTTGTTAAGAACA+GGG | 0.621388 | 2:-69250867 | MsaT010147.1:CDS |
TGTTTGTGGAGCGATGTAAG+AGG | 0.624641 | 2:-69249224 | MsaT010147.1:CDS |
AGAACAACCTCAAGGTGTGA+AGG | 0.629045 | 2:-69249798 | MsaT010147.1:CDS |
CACAAACGGTGATGAGCATG+TGG | 0.629443 | 2:+69250050 | None:intergenic |
GGTTAGCCGTATGGACTACT+CGG | 0.633294 | 2:-69250324 | MsaT010147.1:CDS |
TAGTTACAAATGCAGGATCA+CGG | 0.636049 | 2:+69249256 | None:intergenic |
AATACCAAATGAAAATGATG+AGG | 0.636392 | 2:-69250592 | MsaT010147.1:CDS |
CCGTCAATTATAACTGACAC+AGG | 0.642200 | 2:+69250110 | None:intergenic |
AAACCATAGATGCGTGACGT+AGG | 0.642746 | 2:+69250557 | None:intergenic |
CAACGAGCAATTCAAGAACA+GGG | 0.647223 | 2:-69250477 | MsaT010147.1:CDS |
GTCTTCGACATCTTCATCCG+AGG | 0.652680 | 2:+69251078 | None:intergenic |
GGAAGATTGGAACACACCCA+TGG | 0.654797 | 2:-69248836 | MsaT010147.1:intron |
TTGATTATGATGGTTCACAC+CGG | 0.656177 | 2:+69250229 | None:intergenic |
CGAACACCGAGTAGTCCATA+CGG | 0.658090 | 2:+69250318 | None:intergenic |
TCAAGGGTATGATGAAGACT+CGG | 0.658393 | 2:-69248857 | MsaT010147.1:CDS |
CTGGTTTCAGAACAACCTCA+AGG | 0.660159 | 2:-69249806 | MsaT010147.1:CDS |
ATTCAAGTACACGTTGACGC+TGG | 0.666323 | 2:-69250725 | MsaT010147.1:CDS |
GTCGAAGGTGATGTGCGTAG+TGG | 0.667120 | 2:-69249531 | MsaT010147.1:CDS |
AATGTCTCGTGATGGAACGA+TGG | 0.673772 | 2:-69249332 | MsaT010147.1:CDS |
ACTGCCAGAATGTCTCGTGA+TGG | 0.677078 | 2:-69249340 | MsaT010147.1:CDS |
TAGGGTCGGATGAAATCATG+AGG | 0.679042 | 2:-69250967 | MsaT010147.1:CDS |
CAATGTAAGCGACATAACTG+GGG | 0.679402 | 2:-69251294 | MsaT010147.1:CDS |
AGGATCTCCACACTTCAACA+CGG | 0.684367 | 2:+69249191 | None:intergenic |
ACATGTAAGATATGTTCACA+AGG | 0.686637 | 2:+69249387 | None:intergenic |
TGAAGTTGATGAATTGCCCG+TGG | 0.692394 | 2:-69249100 | MsaT010147.1:CDS |
TGTGGAGCGATGTAAGAGGA+TGG | 0.701905 | 2:-69249220 | MsaT010147.1:CDS |
CAACTTTGACGATGAAACGG+CGG | 0.704083 | 2:-69251032 | MsaT010147.1:CDS |
ACATTGGAATCATTAAGCAG+GGG | 0.706809 | 2:-69249123 | MsaT010147.1:CDS |
AATGTAAGCGACATAACTGG+GGG | 0.709527 | 2:-69251293 | MsaT010147.1:CDS |
TAGATACAGAGAAATTGAGG+CGG | 0.729517 | 2:-69249688 | MsaT010147.1:CDS |
AAACTGAGGACACTTACGTG+TGG | 0.737471 | 2:-69250172 | MsaT010147.1:CDS |
GATTGTTGGTGATGAAACTG+AGG | 0.758154 | 2:-69250186 | MsaT010147.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 69248550 | 69251354 | 69248550 | ID=MsaG010147 |
Chr2 | mRNA | 69248550 | 69251354 | 69248550 | ID=MsaT010147.1;Parent=MsaG010147 |
Chr2 | exon | 69248550 | 69248555 | 69248550 | ID=MsaT010147.1.exon5;Parent=MsaT010147.1 |
Chr2 | CDS | 69248550 | 69248555 | 69248550 | ID=cds.MsaT010147.1;Parent=MsaT010147.1 |
Chr2 | exon | 69248837 | 69248905 | 69248837 | ID=MsaT010147.1.exon4;Parent=MsaT010147.1 |
Chr2 | CDS | 69248837 | 69248905 | 69248837 | ID=cds.MsaT010147.1;Parent=MsaT010147.1 |
Chr2 | exon | 69249014 | 69249836 | 69249014 | ID=MsaT010147.1.exon3;Parent=MsaT010147.1 |
Chr2 | CDS | 69249014 | 69249836 | 69249014 | ID=cds.MsaT010147.1;Parent=MsaT010147.1 |
Chr2 | exon | 69249882 | 69251140 | 69249882 | ID=MsaT010147.1.exon2;Parent=MsaT010147.1 |
Chr2 | CDS | 69249882 | 69251140 | 69249882 | ID=cds.MsaT010147.1;Parent=MsaT010147.1 |
Chr2 | exon | 69251259 | 69251354 | 69251259 | ID=MsaT010147.1.exon1;Parent=MsaT010147.1 |
Chr2 | CDS | 69251259 | 69251354 | 69251259 | ID=cds.MsaT010147.1;Parent=MsaT010147.1 |
Gene Sequence |
Protein sequence |