AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG010147


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG010147 MtrunA17_Chr1g0203051 62.321 629 212 3 1 612 1 621 0.0 815
MsaG010147 MtrunA17_Chr2g0287651 38.021 576 336 4 70 625 58 632 8.56e-136 422
MsaG010147 MtrunA17_Chr5g0448761 31.010 574 367 7 93 638 66 638 1.63e-90 300
MsaG010147 MtrunA17_Chr1g0202341 29.982 557 350 9 99 625 63 609 2.06e-81 273
MsaG010147 MtrunA17_Chr2g0324011 28.339 554 369 8 99 628 22 571 3.60e-72 246
MsaG010147 MtrunA17_Chr8g0363841 27.928 555 372 8 99 628 29 580 7.84e-72 247
MsaG010147 MtrunA17_Chr1g0198761 27.074 687 447 18 99 744 59 732 1.20e-68 240
MsaG010147 MtrunA17_Chr1g0207551 30.536 560 352 14 93 625 40 589 3.95e-67 237
MsaG010147 MtrunA17_Chr6g0458391 28.036 560 339 12 99 625 237 765 1.63e-66 234
MsaG010147 MtrunA17_Chr6g0458391 23.913 276 178 8 12 261 20 289 4.65e-14 76.3
MsaG010147 MtrunA17_Chr5g0441581 28.339 554 350 12 102 625 47 583 4.00e-66 232
MsaG010147 MtrunA17_Chr3g0082121 28.305 590 362 11 78 629 28 594 1.15e-65 231
MsaG010147 MtrunA17_Chr2g0287061 28.381 599 346 16 78 640 165 716 4.92e-65 231
MsaG010147 MtrunA17_Chr5g0448511 31.266 387 245 3 262 628 15 400 7.57e-64 222
MsaG010147 MtrunA17_Chr2g0329031 28.597 563 349 14 93 624 20 560 1.01e-62 223
MsaG010147 MtrunA17_Chr1g0203721 27.978 554 371 8 99 627 75 625 2.96e-60 219
MsaG010147 MtrunA17_Chr2g0296781 28.237 556 358 11 101 625 11 556 1.59e-59 214
MsaG010147 MtrunA17_Chr3g0080351 27.690 567 351 11 93 625 82 623 8.01e-59 214
MsaG010147 MtrunA17_Chr3g0118611 31.323 431 268 8 250 658 110 534 1.52e-57 209
MsaG010147 MtrunA17_Chr2g0308841 40.265 226 120 1 414 624 1 226 1.09e-54 189
MsaG010147 MtrunA17_Chr5g0440451 25.217 575 359 12 99 626 55 605 3.29e-54 201
MsaG010147 MtrunA17_Chr6g0477261 29.688 448 281 9 208 625 2 445 5.24e-54 197
MsaG010147 MtrunA17_Chr2g0290391 26.215 576 373 13 99 636 63 624 1.03e-52 194
MsaG010147 MtrunA17_Chr5g0431001 28.744 414 263 8 93 474 67 480 4.53e-48 177
MsaG010147 MtrunA17_Chr2g0291591 29.293 495 302 17 99 561 76 554 2.18e-47 177
MsaG010147 MtrunA17_Chr2g0276841 23.944 568 367 17 98 622 81 626 1.93e-45 173
MsaG010147 MtrunA17_Chr2g0294841 24.956 565 375 16 93 620 51 603 6.23e-45 172
MsaG010147 MtrunA17_Chr1g0196541 26.455 567 370 14 93 625 3 556 1.21e-42 165
MsaG010147 MtrunA17_Chr2g0291581 25.000 564 361 14 99 625 83 621 3.93e-42 163
MsaG010147 MtrunA17_Chr8g0389811 46.377 138 72 1 61 196 58 195 3.76e-40 146
MsaG010147 MtrunA17_Chr1g0164591 28.618 304 183 6 166 453 3 288 3.92e-34 133
MsaG010147 MtrunA17_Chr7g0258861 29.181 281 193 4 99 374 22 301 3.70e-33 130
MsaG010147 MtrunA17_Chr8g0340801 48.598 107 55 0 196 302 1 107 5.62e-31 117
MsaG010147 MtrunA17_Chr1g0171741 34.518 197 120 4 23 215 71 262 6.15e-27 110
MsaG010147 MtrunA17_Chr2g0331371 39.844 128 75 1 68 193 36 163 6.77e-27 108
MsaG010147 MtrunA17_Chr6g0473421 41.053 95 54 1 68 160 36 130 6.59e-22 92.8
MsaG010147 MtrunA17_Chr1g0172931 40.909 110 63 1 60 167 49 158 5.45e-18 81.6
MsaG010147 MtrunA17_Chr7g0228051 51.471 68 30 1 32 96 18 85 3.47e-12 63.2
MsaG010147 MtrunA17_Chr1g0149131 32.632 95 59 1 364 453 1 95 3.46e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG010147 AT4G38180.1 32.206 562 352 8 93 628 79 637 6.77e-89 296
MsaG010147 AT4G15090.1 28.292 562 375 9 93 630 57 614 2.58e-70 246
MsaG010147 AT4G15090.5 28.292 562 375 9 93 630 57 614 2.58e-70 246
MsaG010147 AT4G15090.3 28.292 562 375 9 93 630 57 614 2.58e-70 246
MsaG010147 AT4G15090.2 28.292 562 375 9 93 630 57 614 2.58e-70 246
MsaG010147 AT4G15090.4 28.292 562 375 9 93 630 57 614 2.58e-70 246
MsaG010147 AT3G06250.2 28.545 550 329 13 99 628 202 707 6.50e-64 228
MsaG010147 AT3G06250.1 28.545 550 329 13 99 628 202 707 6.50e-64 228
MsaG010147 AT3G06250.3 28.545 550 329 13 99 628 202 707 6.50e-64 228
MsaG010147 AT3G22170.2 27.051 573 348 12 93 625 76 618 1.84e-62 225
MsaG010147 AT3G22170.1 27.051 573 348 12 93 625 76 618 1.84e-62 225
MsaG010147 AT5G18960.2 29.189 555 322 15 99 628 223 731 9.18e-62 222
MsaG010147 AT5G18960.1 29.189 555 322 15 99 628 223 731 9.18e-62 222
MsaG010147 AT2G27110.2 26.405 587 373 14 82 639 43 599 1.59e-60 219
MsaG010147 AT2G27110.1 26.405 587 373 14 82 639 43 599 1.59e-60 219
MsaG010147 AT1G76320.3 27.405 551 363 10 99 626 9 545 3.64e-59 213
MsaG010147 AT1G76320.2 27.405 551 363 10 99 626 9 545 5.90e-59 213
MsaG010147 AT1G76320.1 27.405 551 363 10 99 626 9 545 6.43e-59 213
MsaG010147 AT1G76320.4 27.405 551 363 10 99 626 9 545 6.43e-59 213
MsaG010147 AT2G27110.3 30.179 391 248 6 259 628 51 437 1.87e-56 206
MsaG010147 AT5G28530.3 27.461 579 357 18 99 634 67 625 2.22e-54 199
MsaG010147 AT5G28530.2 27.461 579 357 18 99 634 67 625 2.22e-54 199
MsaG010147 AT5G28530.1 27.539 581 358 18 99 634 67 629 3.05e-54 199
MsaG010147 AT4G38170.1 30.618 356 225 4 291 625 45 399 1.63e-52 191
MsaG010147 AT1G80010.1 27.622 572 352 15 99 625 107 661 6.97e-51 190
MsaG010147 AT2G32250.6 26.770 452 295 10 277 701 187 629 2.23e-48 184
MsaG010147 AT2G32250.1 26.770 452 295 10 277 701 187 629 2.23e-48 184
MsaG010147 AT2G32250.3 26.770 452 295 10 277 701 187 629 2.23e-48 184
MsaG010147 AT2G32250.2 26.770 452 295 10 277 701 187 629 2.31e-48 183
MsaG010147 AT2G32250.4 26.770 452 295 10 277 701 187 629 2.31e-48 183
MsaG010147 AT2G32250.8 26.770 452 295 10 277 701 146 588 2.61e-48 183
MsaG010147 AT2G32250.5 26.770 452 295 10 277 701 187 629 2.74e-48 183
MsaG010147 AT2G32250.7 26.770 452 295 10 277 701 146 588 2.76e-48 183
MsaG010147 AT4G19990.5 25.439 570 351 13 93 625 27 559 2.54e-47 180
MsaG010147 AT4G19990.3 25.439 570 351 13 93 625 27 559 3.04e-47 179
MsaG010147 AT4G19990.4 25.439 570 351 13 93 625 27 559 3.04e-47 179
MsaG010147 AT4G19990.7 25.439 570 351 13 93 625 41 573 3.48e-47 179
MsaG010147 AT4G19990.6 25.439 570 351 13 93 625 27 559 3.71e-47 179
MsaG010147 AT4G19990.2 25.439 570 351 13 93 625 27 559 3.71e-47 179
MsaG010147 AT1G10240.2 25.260 578 379 19 98 638 59 620 7.38e-46 175
MsaG010147 AT1G10240.1 25.260 578 379 19 98 638 59 620 7.38e-46 175
MsaG010147 AT4G19990.1 25.326 537 328 12 125 625 3 502 2.22e-44 171
MsaG010147 AT1G52520.1 25.933 563 360 14 99 625 97 638 9.46e-44 169
MsaG010147 AT5G28530.5 25.397 567 321 19 99 634 67 562 3.02e-36 145
MsaG010147 AT5G28530.4 25.483 569 322 19 99 634 67 566 3.68e-36 145

Find 148 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAACTTCGGGACAAATTT+TGG 0.120633 2:+69249984 None:intergenic
GAACACTTCGACATTTATTT+TGG 0.173268 2:-69250355 MsaT010147.1:CDS
GAAGGTCTTCACTCTGAATT+TGG 0.235885 2:-69249780 MsaT010147.1:CDS
TGTTACCGTCTTGTCGAATT+TGG 0.240334 2:-69249751 MsaT010147.1:CDS
ATCCAATGAATATCATTCTT+AGG 0.249372 2:+69249477 None:intergenic
CTCGGTGTTCGGAGATGTTT+TGG 0.254426 2:-69250306 MsaT010147.1:CDS
ATTTAAATGTCAACCGTTCT+TGG 0.283454 2:+69249442 None:intergenic
CAACTAAACGATCCTGAAAA+TGG 0.285819 2:+69250942 None:intergenic
GCGGATTATGCATCTTCTTT+TGG 0.297889 2:-69249669 MsaT010147.1:CDS
CCTCTGAACCTTCCGCATTA+AGG 0.302211 2:+69251264 None:intergenic
CGTTCCATCACGAGACATTC+TGG 0.305013 2:+69249336 None:intergenic
GATTTGTTGGTTGCAGAGTT+TGG 0.306543 2:-69249912 MsaT010147.1:CDS
AAAGTTGTGTTGTTAAGAAC+AGG 0.323586 2:-69250868 MsaT010147.1:CDS
TGCAAAAGATTTGAGACATT+TGG 0.326462 2:-69249414 MsaT010147.1:CDS
AGGGTATTTGAAAACATTAT+AGG 0.328540 2:+69249497 None:intergenic
GCTTAATGATTCCAATGTTT+CGG 0.343715 2:+69249128 None:intergenic
CTGATACTTCCCATCCAAAA+AGG 0.344955 2:+69250655 None:intergenic
GCATACACCGTTTGAACTTC+GGG 0.346256 2:+69249973 None:intergenic
GATGCAATTGATTTCCTTAA+GGG 0.353772 2:-69250431 MsaT010147.1:CDS
CCCAATGTAAGCGACATAAC+TGG 0.364706 2:-69251296 MsaT010147.1:CDS
TTGTGCTGAGTTTGCAAAAC+GGG 0.375014 2:+69249642 None:intergenic
ATTCCTACGTCACGCATCTA+TGG 0.380981 2:-69250560 MsaT010147.1:CDS
ATTTGTTGGTTGCAGAGTTT+GGG 0.383219 2:-69249911 MsaT010147.1:CDS
GATTCCATCTTTAGCACGTT+TGG 0.386420 2:+69249308 None:intergenic
CTCATCACCGTTTGTGTGCC+TGG 0.393277 2:-69250043 MsaT010147.1:CDS
GGTCAGTGTTTAAACAGTTT+AGG 0.394434 2:-69249584 MsaT010147.1:CDS
GGATGCAATTGATTTCCTTA+AGG 0.395881 2:-69250432 MsaT010147.1:CDS
TTTGTCATAGAGAAGGTTAC+AGG 0.397074 2:-69250817 MsaT010147.1:CDS
GTACAAATGATATGATGTTT+TGG 0.401855 2:-69250400 MsaT010147.1:CDS
ACCCTAAGAATGATATTCAT+TGG 0.408328 2:-69249479 MsaT010147.1:CDS
TTGTACTACACAAACCCTTA+AGG 0.414188 2:+69250417 None:intergenic
AGCATACACCGTTTGAACTT+CGG 0.421787 2:+69249972 None:intergenic
TATACACAAAACCATGGAAA+TGG 0.430787 2:-69249163 MsaT010147.1:CDS
CCCAGTTATGTCGCTTACAT+TGG 0.430950 2:+69251295 None:intergenic
ATATGACACTTTGATTATGA+TGG 0.433821 2:+69250219 None:intergenic
TAAACAGTTTAGGCCCGTAT+TGG 0.437957 2:-69249574 MsaT010147.1:CDS
TGAAACTATGTGGGATTTGT+TGG 0.439762 2:-69249925 MsaT010147.1:CDS
CAACAATTTCTTAAGGCAAT+GGG 0.441409 2:-69250143 MsaT010147.1:CDS
CATAATCAAAGTGTCATATT+CGG 0.442581 2:-69250215 MsaT010147.1:CDS
ATGATGAAGACTCGGAAGAT+TGG 0.445167 2:-69248849 MsaT010147.1:CDS
ACAACGAGCAATTCAAGAAC+AGG 0.446586 2:-69250478 MsaT010147.1:CDS
TCCAATGAATATCATTCTTA+GGG 0.448741 2:+69249478 None:intergenic
GCTGCTGCAACAATTTCTTA+AGG 0.452751 2:-69250150 MsaT010147.1:CDS
GACATGTACAGTTCGTTGTA+TGG 0.455744 2:-69251058 MsaT010147.1:CDS
CCAGTTATGTCGCTTACATT+GGG 0.461886 2:+69251296 None:intergenic
TACCGTCTTGTCGAATTTGG+TGG 0.463178 2:-69249748 MsaT010147.1:CDS
CGTATGGACTACTCGGTGTT+CGG 0.466575 2:-69250317 MsaT010147.1:CDS
TCACATATCAATGATGATCA+AGG 0.468748 2:-69248874 MsaT010147.1:CDS
TTGGGTTGGAAAATAATAAG+TGG 0.477062 2:-69249893 MsaT010147.1:CDS
CCAATGTAAGCGACATAACT+GGG 0.477737 2:-69251295 MsaT010147.1:CDS
GCAACAATTTCTTAAGGCAA+TGG 0.480229 2:-69250144 MsaT010147.1:CDS
TTGAAGAGTTTGAAACTATG+TGG 0.492334 2:-69249935 MsaT010147.1:CDS
AACTAGTAGGTGTGGTTGCA+TGG 0.492607 2:-69250753 MsaT010147.1:CDS
ATGAAAATGATGAGGAAAGC+TGG 0.493711 2:-69250584 MsaT010147.1:CDS
AAACATTGGAATCATTAAGC+AGG 0.500216 2:-69249125 MsaT010147.1:CDS
TTGGAGGCACACAGTTAAAG+AGG 0.502132 2:-69250381 MsaT010147.1:CDS
GAGAGCAGAAGCCAACTAGT+AGG 0.503280 2:-69250766 MsaT010147.1:CDS
TGCATTTCTAGCCAAGTGCC+AGG 0.504434 2:+69250025 None:intergenic
TGAAGAGTTTGAAACTATGT+GGG 0.510185 2:-69249934 MsaT010147.1:CDS
CCGTTTGTGTGCCTGGCACT+TGG 0.510520 2:-69250036 MsaT010147.1:CDS
CCGACAAGATCTCTCCAATA+CGG 0.513615 2:+69249560 None:intergenic
AAGTTCAAACGGTGTATGCT+CGG 0.521054 2:-69249969 MsaT010147.1:CDS
GTGTGATGGGGTTAGCCGTA+TGG 0.524800 2:-69250333 MsaT010147.1:CDS
CCTTAAAATTAATTCTGTCA+AGG 0.525060 2:+69250993 None:intergenic
AATTTGTCCCGAAGTTCAAA+CGG 0.526146 2:-69249980 MsaT010147.1:CDS
CATGGACAATAGCTCTCGTT+CGG 0.530398 2:-69251116 MsaT010147.1:CDS
TGGACCAAACGTGCTAAAGA+TGG 0.531683 2:-69249312 MsaT010147.1:CDS
TGCGGAAGGTTCAGAGGTAG+AGG 0.537083 2:-69251258 MsaT010147.1:intron
ACCTTTGTTTGTCATAGAGA+AGG 0.542041 2:-69250824 MsaT010147.1:CDS
TGTTAGATACAGAGAAATTG+AGG 0.546396 2:-69249691 MsaT010147.1:CDS
GTGCAACTTTGACGATGAAA+CGG 0.547511 2:-69251035 MsaT010147.1:CDS
TCCACACTTCAACACGGCAT+TGG 0.549156 2:+69249197 None:intergenic
TCTGTCACTGAACCGACCAC+GGG 0.550131 2:+69249084 None:intergenic
ACATGTACAGTTCGTTGTAT+GGG 0.550841 2:-69251057 MsaT010147.1:CDS
TCGCTCATATTCCTATGTGC+AGG 0.551020 2:+69250623 None:intergenic
ATGCAACCACACCTACTAGT+TGG 0.551707 2:+69250755 None:intergenic
TTCTGTCACTGAACCGACCA+CGG 0.554234 2:+69249083 None:intergenic
GTTGGTTGCAGAGTTTGGGT+TGG 0.554814 2:-69249907 MsaT010147.1:CDS
AACTACGTATGTGATGTTTG+TGG 0.557581 2:-69249238 MsaT010147.1:CDS
AATTTGTACGGTTGTGTACG+TGG 0.562187 2:-69250905 MsaT010147.1:CDS
CCTGTGTCAGTTATAATTGA+CGG 0.563332 2:-69250110 MsaT010147.1:CDS
ATATTCGGTAGTGCGATTGT+TGG 0.564979 2:-69250200 MsaT010147.1:CDS
CCGTATTGGAGAGATCTTGT+CGG 0.566564 2:-69249560 MsaT010147.1:CDS
AACATTGGAATCATTAAGCA+GGG 0.567060 2:-69249124 MsaT010147.1:CDS
TTTGTGCTGAGTTTGCAAAA+CGG 0.567191 2:+69249641 None:intergenic
GAGGAAGAGTACAGATGCAG+AGG 0.570853 2:-69250453 MsaT010147.1:CDS
CCGCAACGGCTTAAGAAAAG+AGG 0.575682 2:-69249045 MsaT010147.1:CDS
CCAAGTGCCAGGCACACAAA+CGG 0.576385 2:+69250036 None:intergenic
CAACGGCTTAAGAAAAGAGG+TGG 0.576611 2:-69249042 MsaT010147.1:CDS
ACATACGTAGTTACAAATGC+AGG 0.577104 2:+69249249 None:intergenic
GGAGAGTGATGTATGTTCCT+CGG 0.577170 2:-69251095 MsaT010147.1:CDS
TGAAACGGCGGTTGATTGCA+TGG 0.577332 2:-69251020 MsaT010147.1:CDS
AGCAATTCAAGAACAGGGAG+AGG 0.577733 2:-69250472 MsaT010147.1:CDS
CGACAAGATCTCTCCAATAC+GGG 0.579381 2:+69249561 None:intergenic
TCTTAAGGCAATGGGCGGGA+AGG 0.583388 2:-69250135 MsaT010147.1:CDS
CACATATCAATGATGATCAA+GGG 0.585150 2:-69248873 MsaT010147.1:CDS
CAGAAGCCAACTAGTAGGTG+TGG 0.587238 2:-69250761 MsaT010147.1:CDS
AATTTCTTAAGGCAATGGGC+GGG 0.590362 2:-69250139 MsaT010147.1:CDS
CAATTTCTTAAGGCAATGGG+CGG 0.591352 2:-69250140 MsaT010147.1:CDS
GTACACGTTGACGCTGGTAG+CGG 0.591900 2:-69250719 MsaT010147.1:CDS
TTGACGCTGGTAGCGGTCGA+TGG 0.592302 2:-69250712 MsaT010147.1:CDS
TGTGTTGTTAAGAACAGGGA+TGG 0.595308 2:-69250863 MsaT010147.1:CDS
TGAATATATACACAAAACCA+TGG 0.595738 2:-69249169 MsaT010147.1:CDS
CCTTAATGCGGAAGGTTCAG+AGG 0.595778 2:-69251264 MsaT010147.1:CDS
GTGAAGACCTTCACACCTTG+AGG 0.596000 2:+69249791 None:intergenic
AGGCACACAGTTAAAGAGGA+TGG 0.598221 2:-69250377 MsaT010147.1:CDS
TTGAAAGTAATGCCGCCGAT+AGG 0.598358 2:-69250793 MsaT010147.1:CDS
TTGTCATAGAGAAGGTTACA+GGG 0.601328 2:-69250816 MsaT010147.1:CDS
GTTGATGAATTGCCCGTGGT+CGG 0.602393 2:-69249096 MsaT010147.1:CDS
TCTTGTCGGTGCAAAGTCGA+AGG 0.608632 2:-69249546 MsaT010147.1:CDS
GCCAATGCCGTGTTGAAGTG+TGG 0.608683 2:-69249198 MsaT010147.1:CDS
ATCCACCAAATTCGACAAGA+CGG 0.610939 2:+69249746 None:intergenic
GGATGCAACCTTAATGCGGA+AGG 0.614546 2:-69251272 MsaT010147.1:CDS
AGGGAATGCTACCTGCACAT+AGG 0.615340 2:-69250634 MsaT010147.1:CDS
AAAGTTTAGGTAATCCGCAA+CGG 0.615547 2:-69249059 MsaT010147.1:CDS
ACCTTCTCTATGACAAACAA+AGG 0.615884 2:+69250823 None:intergenic
AAGTTGTGTTGTTAAGAACA+GGG 0.621388 2:-69250867 MsaT010147.1:CDS
TGTTTGTGGAGCGATGTAAG+AGG 0.624641 2:-69249224 MsaT010147.1:CDS
AGAACAACCTCAAGGTGTGA+AGG 0.629045 2:-69249798 MsaT010147.1:CDS
CACAAACGGTGATGAGCATG+TGG 0.629443 2:+69250050 None:intergenic
GGTTAGCCGTATGGACTACT+CGG 0.633294 2:-69250324 MsaT010147.1:CDS
TAGTTACAAATGCAGGATCA+CGG 0.636049 2:+69249256 None:intergenic
AATACCAAATGAAAATGATG+AGG 0.636392 2:-69250592 MsaT010147.1:CDS
CCGTCAATTATAACTGACAC+AGG 0.642200 2:+69250110 None:intergenic
AAACCATAGATGCGTGACGT+AGG 0.642746 2:+69250557 None:intergenic
CAACGAGCAATTCAAGAACA+GGG 0.647223 2:-69250477 MsaT010147.1:CDS
GTCTTCGACATCTTCATCCG+AGG 0.652680 2:+69251078 None:intergenic
GGAAGATTGGAACACACCCA+TGG 0.654797 2:-69248836 MsaT010147.1:intron
TTGATTATGATGGTTCACAC+CGG 0.656177 2:+69250229 None:intergenic
CGAACACCGAGTAGTCCATA+CGG 0.658090 2:+69250318 None:intergenic
TCAAGGGTATGATGAAGACT+CGG 0.658393 2:-69248857 MsaT010147.1:CDS
CTGGTTTCAGAACAACCTCA+AGG 0.660159 2:-69249806 MsaT010147.1:CDS
ATTCAAGTACACGTTGACGC+TGG 0.666323 2:-69250725 MsaT010147.1:CDS
GTCGAAGGTGATGTGCGTAG+TGG 0.667120 2:-69249531 MsaT010147.1:CDS
AATGTCTCGTGATGGAACGA+TGG 0.673772 2:-69249332 MsaT010147.1:CDS
ACTGCCAGAATGTCTCGTGA+TGG 0.677078 2:-69249340 MsaT010147.1:CDS
TAGGGTCGGATGAAATCATG+AGG 0.679042 2:-69250967 MsaT010147.1:CDS
CAATGTAAGCGACATAACTG+GGG 0.679402 2:-69251294 MsaT010147.1:CDS
AGGATCTCCACACTTCAACA+CGG 0.684367 2:+69249191 None:intergenic
ACATGTAAGATATGTTCACA+AGG 0.686637 2:+69249387 None:intergenic
TGAAGTTGATGAATTGCCCG+TGG 0.692394 2:-69249100 MsaT010147.1:CDS
TGTGGAGCGATGTAAGAGGA+TGG 0.701905 2:-69249220 MsaT010147.1:CDS
CAACTTTGACGATGAAACGG+CGG 0.704083 2:-69251032 MsaT010147.1:CDS
ACATTGGAATCATTAAGCAG+GGG 0.706809 2:-69249123 MsaT010147.1:CDS
AATGTAAGCGACATAACTGG+GGG 0.709527 2:-69251293 MsaT010147.1:CDS
TAGATACAGAGAAATTGAGG+CGG 0.729517 2:-69249688 MsaT010147.1:CDS
AAACTGAGGACACTTACGTG+TGG 0.737471 2:-69250172 MsaT010147.1:CDS
GATTGTTGGTGATGAAACTG+AGG 0.758154 2:-69250186 MsaT010147.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 69248550 69251354 69248550 ID=MsaG010147
Chr2 mRNA 69248550 69251354 69248550 ID=MsaT010147.1;Parent=MsaG010147
Chr2 exon 69248550 69248555 69248550 ID=MsaT010147.1.exon5;Parent=MsaT010147.1
Chr2 CDS 69248550 69248555 69248550 ID=cds.MsaT010147.1;Parent=MsaT010147.1
Chr2 exon 69248837 69248905 69248837 ID=MsaT010147.1.exon4;Parent=MsaT010147.1
Chr2 CDS 69248837 69248905 69248837 ID=cds.MsaT010147.1;Parent=MsaT010147.1
Chr2 exon 69249014 69249836 69249014 ID=MsaT010147.1.exon3;Parent=MsaT010147.1
Chr2 CDS 69249014 69249836 69249014 ID=cds.MsaT010147.1;Parent=MsaT010147.1
Chr2 exon 69249882 69251140 69249882 ID=MsaT010147.1.exon2;Parent=MsaT010147.1
Chr2 CDS 69249882 69251140 69249882 ID=cds.MsaT010147.1;Parent=MsaT010147.1
Chr2 exon 69251259 69251354 69251259 ID=MsaT010147.1.exon1;Parent=MsaT010147.1
Chr2 CDS 69251259 69251354 69251259 ID=cds.MsaT010147.1;Parent=MsaT010147.1
Gene Sequence

>MsaT010147.1

ATGGATATTCATGAAATTCTAGAAATTTTCGGAATTCCCAATGTAAGCGACATAACTGGGGGATGCAACCTTAATGCGGAAGGTTCAGAGGTAGAGGACATGGACAATAGCTCTCGTTCGGAGAGTGATGTATGTTCCTCGGATGAAGATGTCGAAGACATGTACAGTTCGTTGTATGGGTGCAACTTTGACGATGAAACGGCGGTTGATTGCATGGCTGACCTTGACAGAATTAATTTTAAGGAAATAGGGTCGGATGAAATCATGAGGTACCATTTTCAGGATCGTTTAGTTGCATTCAAGTTTTACAATTTGTACGGTTGTGTACGTGGATTTTCTGGTAGAAAAAGTTGTGTTGTTAAGAACAGGGATGGCGATGTTGTTCAACAAACCTTTGTTTGTCATAGAGAAGGTTACAGGGTTGAAAGTAATGCCGCCGATAGGAAAAGAGAGCAGAAGCCAACTAGTAGGTGTGGTTGCATGGCAAAAATTCAAGTACACGTTGACGCTGGTAGCGGTCGATGGTACATAAAATCAGTTGACGATATTCACAATCACACCTTTTTGGATGGGAAGTATCAGGGAATGCTACCTGCACATAGGAATATGAGCGATTATGACAAATACCAAATGAAAATGATGAGGAAAGCTGGCATTCCTACGTCACGCATCTATGGTTTTTTTGCTTCACAGGCTGGTGGATTTAAAAATCTTGGATATACAAGAAGAGACATGTACAACGAGCAATTCAAGAACAGGGAGAGGAAGAGTACAGATGCAGAGGATGCAATTGATTTCCTTAAGGGTTTGTGTAGTACAAATGATATGATGTTTTGGAGGCACACAGTTAAAGAGGATGGAACACTTCGACATTTATTTTGGTGTGATGGGGTTAGCCGTATGGACTACTCGGTGTTCGGAGATGTTTTGGCATTTGATGCTACATATCGAAAAATTAAGTACAACACATCGTTAGTTATTTTTTCCGGTGTGAACCATCATAATCAAAGTGTCATATTCGGTAGTGCGATTGTTGGTGATGAAACTGAGGACACTTACGTGTGGCTGCTGCAACAATTTCTTAAGGCAATGGGCGGGAAGGCACCTGTGTCAGTTATAATTGACGGAGATCTATCAATGAGAAATGCAATTAGAAGAGTATTTCCACATGCTCATCACCGTTTGTGTGCCTGGCACTTGGCTAGAAATGCAACGAACAATATAAAAAATCCAAAATTTGTCCCGAAGTTCAAACGGTGTATGCTCGGTGATTTTGATATTGAAGAGTTTGAAACTATGTGGGATTTGTTGGTTGCAGAGTTTGGGTTGGAAAATAATAAGTGGATTCGTGAGCTATTTTATGCTGGTTTCAGAACAACCTCAAGGTGTGAAGGTCTTCACTCTGAATTTGGAAAATATGTTACCGTCTTGTCGAATTTGGTGGATTTTTTACAGCATCTTTTGCGGTGGCTGAATTATGTTAGATACAGAGAAATTGAGGCGGATTATGCATCTTCTTTTGGTGAACCCGTTTTGCAAACTCAGCACAAAAAATTAGAGAAGTCAGCTTCAAAAATTTATACAAGGTCAGTGTTTAAACAGTTTAGGCCCGTATTGGAGAGATCTTGTCGGTGCAAAGTCGAAGGTGATGTGCGTAGTGGTTCCATTTTTACCTATAATGTTTTCAAATACCCTAAGAATGATATTCATTGGATCGTGACATTTTGCCAAGAACGGTTGACATTTAAATGTTCATGCAAAAGATTTGAGACATTTGGTATTCCTTGTGAACATATCTTACATGTTCTAGTGCATTTGAACATTGTTGTACTGCCAGAATGTCTCGTGATGGAACGATGGACCAAACGTGCTAAAGATGGAATCAATGCTCAAAATGCTAATAGTTCAAGTCACCGTGATCCTGCATTTGTAACTACGTATGTGATGTTTGTGGAGCGATGTAAGAGGATGGCCAATGCCGTGTTGAAGTGTGGAGATCCTGAATATATACACAAAACCATGGAAATGGTTGAAAAACACACCGAAACATTGGAATCATTAAGCAGGGGTGAAGTTGATGAATTGCCCGTGGTCGGTTCAGTGACAGAAAAAAGTTTAGGTAATCCGCAACGGCTTAAGAAAAGAGGTGGAGCAGCAGCTGCGTCGTCATCTCGTAATAATCATTCATCACATATCAATGATGATCAAGGGTATGATGAAGACTCGGAAGATTGGAACACACCCATGGCGTGA

Protein sequence

>MsaT010147.1

MDIHEILEIFGIPNVSDITGGCNLNAEGSEVEDMDNSSRSESDVCSSDEDVEDMYSSLYGCNFDDETAVDCMADLDRINFKEIGSDEIMRYHFQDRLVAFKFYNLYGCVRGFSGRKSCVVKNRDGDVVQQTFVCHREGYRVESNAADRKREQKPTSRCGCMAKIQVHVDAGSGRWYIKSVDDIHNHTFLDGKYQGMLPAHRNMSDYDKYQMKMMRKAGIPTSRIYGFFASQAGGFKNLGYTRRDMYNEQFKNRERKSTDAEDAIDFLKGLCSTNDMMFWRHTVKEDGTLRHLFWCDGVSRMDYSVFGDVLAFDATYRKIKYNTSLVIFSGVNHHNQSVIFGSAIVGDETEDTYVWLLQQFLKAMGGKAPVSVIIDGDLSMRNAIRRVFPHAHHRLCAWHLARNATNNIKNPKFVPKFKRCMLGDFDIEEFETMWDLLVAEFGLENNKWIRELFYAGFRTTSRCEGLHSEFGKYVTVLSNLVDFLQHLLRWLNYVRYREIEADYASSFGEPVLQTQHKKLEKSASKIYTRSVFKQFRPVLERSCRCKVEGDVRSGSIFTYNVFKYPKNDIHWIVTFCQERLTFKCSCKRFETFGIPCEHILHVLVHLNIVVLPECLVMERWTKRAKDGINAQNANSSSHRDPAFVTTYVMFVERCKRMANAVLKCGDPEYIHKTMEMVEKHTETLESLSRGEVDELPVVGSVTEKSLGNPQRLKKRGGAAAASSSRNNHSSHINDDQGYDEDSEDWNTPMA*