AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG010157

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG010157 MtrunA17_Chr2g0321101 98.338 361 6 0 122 482 104 464 0.0 750
MsaG010157 MtrunA17_Chr2g0290691 57.020 349 133 5 122 459 219 561 1.98e-133 398
MsaG010157 MtrunA17_Chr7g0227331 55.241 353 133 7 122 459 247 589 1.51e-126 381
MsaG010157 MtrunA17_Chr1g0179101 56.286 350 128 6 122 459 485 821 2.21e-126 388
MsaG010157 MtrunA17_Chr3g0080101 55.429 350 133 6 122 459 430 768 8.74e-126 385
MsaG010157 MtrunA17_Chr7g0266031 56.857 350 126 6 122 459 507 843 9.81e-126 387
MsaG010157 MtrunA17_Chr7g0250631 54.213 356 129 5 122 461 379 716 1.54e-125 383
MsaG010157 MtrunA17_Chr8g0335351 54.674 353 127 5 122 458 385 720 3.07e-125 382
MsaG010157 MtrunA17_Chr2g0309421 51.157 389 144 7 122 480 190 562 9.44e-125 375
MsaG010157 MtrunA17_Chr8g0356291 53.913 345 150 4 122 462 142 481 2.36e-122 367
MsaG010157 MtrunA17_Chr6g0449401 49.616 391 126 7 122 459 278 650 1.78e-117 360
MsaG010157 MtrunA17_Chr4g0063311 49.337 377 147 7 122 469 106 467 1.95e-117 353
MsaG010157 MtrunA17_Chr2g0285711 50.143 349 148 6 122 459 92 425 1.47e-112 340
MsaG010157 MtrunA17_Chr8g0381091 48.011 352 155 8 122 460 88 424 1.28e-102 314
MsaG010157 MtrunA17_Chr2g0312641 46.591 352 152 7 123 469 110 430 1.27e-98 305
MsaG010157 MtrunA17_Chr4g0030361 48.529 340 126 6 122 461 322 612 1.34e-96 304
MsaG010157 MtrunA17_Chr2g0327561 47.647 340 140 4 122 461 641 942 3.76e-91 298
MsaG010157 MtrunA17_Chr8g0369091 42.779 367 155 7 122 480 612 931 1.49e-87 287
MsaG010157 MtrunA17_Chr8g0338741 44.771 306 151 7 156 460 74 362 4.66e-81 258
MsaG010157 MtrunA17_Chr4g0032761 39.941 338 180 6 137 462 46 372 1.30e-77 248
MsaG010157 MtrunA17_Chr2g0329011 38.529 340 171 8 122 459 30 333 5.36e-72 233
MsaG010157 MtrunA17_Chr7g0234641 36.950 341 189 8 138 470 41 363 4.43e-64 213
MsaG010157 MtrunA17_Chr6g0478601 33.728 338 178 7 123 459 125 417 1.19e-50 180
MsaG010157 MtrunA17_Chr5g0428981 32.249 369 195 9 123 482 777 1099 1.99e-50 185
MsaG010157 MtrunA17_Chr4g0018201 31.978 369 196 9 123 482 773 1095 4.47e-50 184
MsaG010157 MtrunA17_Chr1g0153321 30.769 325 191 7 137 459 133 425 3.45e-44 162
MsaG010157 MtrunA17_Chr1g0183651 30.330 333 182 7 136 459 144 435 1.17e-42 159
MsaG010157 MtrunA17_Chr1g0187581 30.422 332 182 7 137 459 142 433 3.61e-41 154
MsaG010157 MtrunA17_Chr3g0135951 30.368 326 198 7 137 459 119 418 1.30e-40 152
MsaG010157 MtrunA17_Chr1g0167351 30.581 327 189 8 137 459 135 427 1.11e-38 147
MsaG010157 MtrunA17_Chr1g0197721 30.966 352 175 7 123 473 65 349 1.27e-38 147
MsaG010157 MtrunA17_Chr1g0167311 29.538 325 194 8 137 459 140 431 1.38e-38 147
MsaG010157 MtrunA17_Chr2g0299781 30.000 330 194 8 137 459 138 437 2.54e-37 143
MsaG010157 MtrunA17_Chr7g0261491 29.003 331 191 10 137 459 145 439 2.64e-37 144
MsaG010157 MtrunA17_Chr7g0245031 40.000 130 76 1 137 266 173 300 7.47e-24 104
MsaG010157 MtrunA17_Chr7g0245031 38.095 126 73 3 337 459 300 423 3.65e-18 87.0
MsaG010157 MtrunA17_Chr4g0059751 40.152 132 73 2 136 265 120 247 1.00e-22 100
MsaG010157 MtrunA17_Chr4g0059751 35.664 143 87 3 338 477 249 389 1.91e-20 93.6
MsaG010157 MtrunA17_Chr3g0125381 42.975 121 67 1 327 445 95 215 2.11e-21 92.4
MsaG010157 MtrunA17_Chr8g0353621 26.990 289 136 6 139 427 37 250 9.79e-20 89.0
MsaG010157 MtrunA17_Chr6g0486661 41.732 127 68 5 336 460 910 1032 1.42e-19 92.4
MsaG010157 MtrunA17_Chr8g0351491 45.794 107 56 1 341 445 170 276 2.03e-19 88.2
MsaG010157 MtrunA17_Chr8g0351491 29.496 139 93 2 123 261 30 163 7.62e-11 62.8
MsaG010157 MtrunA17_Chr3g0140631 43.333 90 51 0 338 427 188 277 5.94e-18 84.3
MsaG010157 MtrunA17_Chr3g0140631 32.609 138 88 2 123 260 51 183 4.99e-14 72.8
MsaG010157 MtrunA17_Chr2g0286501 33.143 175 100 5 138 304 75 240 2.60e-16 82.4
MsaG010157 MtrunA17_Chr5g0428031 22.876 306 158 8 123 427 23 251 5.41e-16 80.1
MsaG010157 MtrunA17_Chr2g0304111 22.687 335 169 10 139 472 50 295 1.59e-15 78.6
MsaG010157 MtrunA17_Chr1g0188031 34.426 122 77 2 139 259 48 167 3.16e-15 77.8
MsaG010157 MtrunA17_Chr7g0272841 34.043 141 85 3 123 259 82 218 6.45e-14 74.3
MsaG010157 MtrunA17_Chr5g0441011 22.759 290 151 7 139 427 40 257 8.50e-14 73.2
MsaG010157 MtrunA17_Chr1g0205421 24.880 209 145 5 139 340 39 242 1.99e-13 72.0
MsaG010157 MtrunA17_Chr5g0432491 31.387 137 89 2 123 259 37 168 3.20e-13 71.6
MsaG010157 MtrunA17_Chr2g0302431 22.050 322 171 8 123 443 34 276 4.32e-13 71.2
MsaG010157 MtrunA17_Chr8g0346081 21.379 290 153 7 139 427 44 259 5.06e-13 70.9
MsaG010157 MtrunA17_Chr8g0346071 21.194 335 172 10 139 471 44 288 8.99e-13 70.1
MsaG010157 MtrunA17_Chr1g0166101 32.609 138 87 3 123 259 38 170 1.16e-12 69.7
MsaG010157 MtrunA17_Chr4g0063881 23.103 290 148 6 139 427 38 253 1.17e-12 69.7
MsaG010157 MtrunA17_Chr2g0321841 29.688 128 85 3 142 264 31 158 1.46e-12 70.1
MsaG010157 MtrunA17_Chr3g0107051 31.405 121 80 1 139 259 48 165 1.52e-12 69.3
MsaG010157 MtrunA17_Chr1g0150321 22.744 277 138 9 158 431 59 262 1.94e-12 68.9
MsaG010157 MtrunA17_Chr2g0284031 29.600 125 85 1 139 263 58 179 4.27e-12 68.2
MsaG010157 MtrunA17_Chr3g0130151 28.485 165 107 4 123 285 258 413 5.76e-12 68.2
MsaG010157 MtrunA17_Chr4g0013131 28.099 121 84 1 139 259 39 156 6.45e-12 67.4
MsaG010157 MtrunA17_Chr3g0114511 29.752 121 80 1 139 259 59 174 7.94e-12 67.0
MsaG010157 MtrunA17_Chr4g0025671 30.469 128 84 3 142 264 35 162 1.24e-11 67.4
MsaG010157 MtrunA17_Chr1g0205931 38.235 102 61 1 160 261 108 207 1.39e-11 67.0
MsaG010157 MtrunA17_Chr1g0203881 35.156 128 75 4 137 259 66 190 1.50e-11 66.6
MsaG010157 MtrunA17_Chr4g0074111 28.676 136 91 2 123 258 32 161 1.80e-11 65.9
MsaG010157 MtrunA17_Chr8g0345801 29.677 155 99 4 139 290 42 189 2.02e-11 64.3
MsaG010157 MtrunA17_Chr4g0047211 27.869 122 86 1 144 265 74 193 2.02e-11 65.5
MsaG010157 MtrunA17_Chr4g0047191 27.869 122 86 1 144 265 79 198 2.10e-11 65.5
MsaG010157 MtrunA17_Chr1g0190831 30.469 128 84 3 142 264 31 158 4.00e-11 65.5
MsaG010157 MtrunA17_Chr3g0132591 29.717 212 120 9 90 293 91 281 4.18e-11 65.1
MsaG010157 MtrunA17_Chr3g0091311 29.771 131 85 2 131 259 31 156 5.25e-11 63.2
MsaG010157 MtrunA17_Chr8g0379091 27.778 126 88 1 139 264 53 175 8.38e-11 64.3
MsaG010157 MtrunA17_Chr1g0202831 29.496 139 91 3 123 259 425 558 9.50e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG010157 AT3G44610.1 73.190 373 85 5 122 482 82 451 0.0 551
MsaG010157 AT5G47750.1 55.858 367 143 5 122 477 204 562 8.75e-135 402
MsaG010157 AT3G27580.2 56.657 353 128 7 122 461 195 535 2.90e-131 392
MsaG010157 AT3G27580.1 56.657 353 128 7 122 461 195 535 2.90e-131 392
MsaG010157 AT4G26610.1 54.213 356 131 6 122 461 136 475 7.34e-129 384
MsaG010157 AT3G12690.1 56.395 344 133 5 122 461 198 528 1.09e-128 385
MsaG010157 AT3G12690.3 56.395 344 133 5 122 461 198 528 1.09e-128 385
MsaG010157 AT3G12690.2 56.395 344 133 5 122 461 198 528 1.09e-128 385
MsaG010157 AT5G55910.2 57.062 354 128 7 122 461 122 465 1.24e-128 383
MsaG010157 AT5G55910.1 57.062 354 128 7 122 461 122 465 1.24e-128 383
MsaG010157 AT1G79250.1 54.945 364 141 7 122 470 159 514 1.69e-128 384
MsaG010157 AT1G79250.3 54.945 364 141 7 122 470 159 514 1.69e-128 384
MsaG010157 AT1G79250.2 54.945 364 141 7 122 470 159 514 1.69e-128 384
MsaG010157 AT1G79250.4 54.945 364 141 7 122 470 159 514 1.69e-128 384
MsaG010157 AT2G36350.1 54.469 358 135 7 122 462 572 918 2.20e-124 385
MsaG010157 AT2G44830.2 56.268 343 141 4 122 459 376 714 2.60e-124 380
MsaG010157 AT2G44830.3 56.268 343 141 4 122 459 376 714 2.60e-124 380
MsaG010157 AT2G44830.1 56.268 343 141 4 122 459 376 714 2.60e-124 380
MsaG010157 AT5G40030.1 55.848 342 143 4 122 461 127 462 3.03e-124 372
MsaG010157 AT1G16440.1 56.560 343 133 6 122 461 126 455 6.13e-124 371
MsaG010157 AT5G03640.2 53.867 362 129 6 122 462 554 898 2.75e-123 382
MsaG010157 AT5G03640.1 53.867 362 129 6 122 462 554 898 2.75e-123 382
MsaG010157 AT3G52890.2 53.333 360 138 5 122 462 551 899 4.28e-122 379
MsaG010157 AT3G52890.4 53.333 360 138 5 122 462 551 899 4.28e-122 379
MsaG010157 AT3G52890.1 53.333 360 138 5 122 462 551 899 4.28e-122 379
MsaG010157 AT3G52890.3 53.333 360 138 5 122 462 551 899 4.28e-122 379
MsaG010157 AT2G26700.1 44.844 417 158 9 122 482 100 500 3.58e-112 342
MsaG010157 AT2G34650.1 50.286 350 146 7 122 464 88 416 2.23e-108 329
MsaG010157 AT1G53700.1 45.658 357 166 5 123 478 107 436 2.28e-93 291
MsaG010157 AT5G58140.6 43.923 362 150 7 109 463 570 885 5.19e-93 302
MsaG010157 AT5G58140.7 43.923 362 150 7 109 463 570 885 5.19e-93 302
MsaG010157 AT5G58140.5 43.923 362 150 7 109 463 570 885 5.19e-93 302
MsaG010157 AT5G58140.2 43.923 362 150 7 109 463 570 885 5.19e-93 302
MsaG010157 AT5G58140.1 43.923 362 150 7 109 463 570 885 5.19e-93 302
MsaG010157 AT3G14370.1 44.932 365 170 7 96 456 73 410 4.79e-91 286
MsaG010157 AT5G58140.3 44.571 350 141 7 109 451 570 873 5.37e-91 296
MsaG010157 AT3G45780.2 45.614 342 138 7 122 461 676 971 4.77e-87 287
MsaG010157 AT3G45780.1 45.614 342 138 7 122 461 676 971 4.77e-87 287
MsaG010157 AT1G51170.1 39.466 337 159 8 138 459 52 358 2.96e-73 237
MsaG010157 AT3G20830.1 38.623 334 168 8 138 459 51 359 3.36e-67 221
MsaG010157 AT4G13000.1 37.126 334 165 10 138 461 44 342 3.43e-67 220
MsaG010157 AT3G25250.1 35.756 344 180 9 129 461 36 349 8.35e-64 213
MsaG010157 AT3G17850.1 34.320 338 176 7 123 459 896 1188 2.22e-48 179
MsaG010157 AT1G45160.1 35.294 340 170 8 123 461 684 974 3.85e-48 178
MsaG010157 AT1G45160.2 35.294 340 170 8 123 461 684 974 4.14e-48 178
MsaG010157 AT5G62310.1 32.558 344 186 6 123 465 768 1066 1.55e-46 174
MsaG010157 AT1G48490.3 32.558 344 168 8 123 459 842 1128 1.70e-46 174
MsaG010157 AT1G48490.2 32.558 344 168 8 123 459 842 1128 1.70e-46 174
MsaG010157 AT1G48490.1 32.558 344 168 8 123 459 842 1128 1.70e-46 174
MsaG010157 AT3G10540.1 30.168 358 182 7 123 479 59 349 1.74e-46 168
MsaG010157 AT1G48490.4 32.558 344 168 8 123 459 843 1129 1.75e-46 174
MsaG010157 AT5G04510.2 31.385 325 158 6 137 460 69 329 5.92e-46 165
MsaG010157 AT5G04510.1 31.692 325 157 6 137 460 69 329 7.01e-46 167
MsaG010157 AT1G30640.3 31.402 328 190 8 136 459 51 347 1.42e-45 166
MsaG010157 AT1G30640.2 31.402 328 190 8 136 459 144 440 6.68e-45 166
MsaG010157 AT1G30640.1 31.402 328 190 8 136 459 144 440 6.68e-45 166
MsaG010157 AT5G09890.1 30.154 325 195 8 137 459 127 421 1.52e-40 152
MsaG010157 AT5G09890.2 30.154 325 195 8 137 459 127 421 1.67e-40 152
MsaG010157 AT4G33080.2 30.275 327 198 8 137 459 119 419 1.74e-40 152
MsaG010157 AT4G33080.1 30.275 327 198 8 137 459 119 419 2.37e-40 152
MsaG010157 AT2G20470.3 29.664 327 189 8 137 459 149 438 1.56e-39 150
MsaG010157 AT2G20470.2 29.664 327 189 8 137 459 149 438 2.19e-39 150
MsaG010157 AT2G20470.1 29.664 327 189 8 137 459 149 438 2.19e-39 150
MsaG010157 AT4G14350.2 30.154 325 192 7 137 459 144 435 2.32e-39 150
MsaG010157 AT4G14350.1 30.154 325 192 7 137 459 144 435 2.32e-39 150
MsaG010157 AT4G14350.4 30.154 325 192 7 137 459 144 435 2.32e-39 150
MsaG010157 AT4G14350.3 30.154 325 192 7 137 459 144 435 3.25e-39 149
MsaG010157 AT3G23310.1 28.011 357 204 9 137 478 145 463 6.44e-39 149
MsaG010157 AT1G03920.2 29.538 325 193 7 137 459 49 339 1.37e-38 146
MsaG010157 AT1G03920.1 29.538 325 193 7 137 459 162 452 4.72e-38 146
MsaG010157 AT1G03920.3 29.538 325 193 7 137 459 162 452 4.72e-38 146
MsaG010157 AT2G19400.1 29.819 332 202 8 133 459 126 431 1.25e-36 142
MsaG010157 AT5G04510.3 29.474 285 137 5 137 421 69 289 2.47e-35 134
MsaG010157 AT3G08720.1 38.194 144 84 2 123 266 154 292 2.25e-22 100
MsaG010157 AT3G08720.1 41.732 127 68 4 336 459 291 414 3.89e-21 96.3
MsaG010157 AT3G08720.3 38.194 144 84 2 123 266 154 292 2.25e-22 100
MsaG010157 AT3G08720.3 41.732 127 68 4 336 459 291 414 3.89e-21 96.3
MsaG010157 AT3G08720.4 38.194 144 84 2 123 266 154 292 2.25e-22 100
MsaG010157 AT3G08720.4 41.732 127 68 4 336 459 291 414 3.89e-21 96.3
MsaG010157 AT3G08720.2 38.194 144 84 2 123 266 154 292 2.25e-22 100
MsaG010157 AT3G08720.2 41.732 127 68 4 336 459 291 414 3.89e-21 96.3
MsaG010157 AT3G08730.1 41.732 127 68 4 336 459 285 408 2.32e-22 100
MsaG010157 AT3G08730.1 37.692 130 79 1 137 266 159 286 3.12e-22 99.8
MsaG010157 AT3G08730.2 41.732 127 68 4 336 459 285 408 2.32e-22 100
MsaG010157 AT3G08730.2 37.692 130 79 1 137 266 159 286 3.12e-22 99.8
MsaG010157 AT5G18700.1 34.031 191 106 6 120 304 15 191 1.02e-20 96.7
MsaG010157 AT2G20050.2 42.857 112 60 3 338 447 931 1040 8.07e-20 93.6
MsaG010157 AT2G20050.1 42.857 112 60 3 338 447 934 1043 8.29e-20 93.6
MsaG010157 AT5G58140.4 42.609 115 56 2 109 216 570 681 2.64e-19 91.7
MsaG010157 AT4G32830.1 44.444 90 50 0 338 427 182 271 8.51e-19 87.0
MsaG010157 AT4G32830.1 31.159 138 90 2 123 260 45 177 7.77e-12 66.6
MsaG010157 AT2G25880.2 43.956 91 51 0 338 428 144 234 4.04e-18 84.3
MsaG010157 AT2G45490.1 48.276 87 45 0 341 427 176 262 4.70e-18 84.7
MsaG010157 AT2G45490.1 30.070 143 93 3 123 264 36 172 1.20e-11 65.9
MsaG010157 AT2G25880.4 43.956 91 51 0 338 428 189 279 5.34e-18 85.1
MsaG010157 AT2G25880.4 31.884 138 89 2 123 260 52 184 4.74e-12 67.4
MsaG010157 AT1G30270.2 24.351 308 155 9 139 444 58 289 5.75e-18 86.7
MsaG010157 AT2G25880.1 43.956 91 51 0 338 428 176 266 6.35e-18 84.3
MsaG010157 AT2G25880.1 31.884 138 89 2 123 260 39 171 5.26e-12 67.0
MsaG010157 AT1G30270.1 24.351 308 155 9 139 444 58 289 7.05e-18 86.7
MsaG010157 AT2G25880.3 43.956 91 51 0 338 428 237 327 1.58e-17 84.3
MsaG010157 AT2G25880.3 31.884 138 89 2 123 260 100 232 5.93e-12 67.4
MsaG010157 AT4G24400.2 23.793 290 146 7 139 427 36 251 1.73e-16 82.0
MsaG010157 AT4G24400.1 23.793 290 146 7 139 427 36 251 1.76e-16 82.0
MsaG010157 AT5G35410.2 24.483 290 144 6 139 427 38 253 2.60e-16 80.9
MsaG010157 AT5G35410.1 24.483 290 144 6 139 427 38 253 6.02e-16 80.5
MsaG010157 AT5G10930.1 24.055 291 146 9 139 427 39 256 1.70e-15 79.0
MsaG010157 AT3G01090.3 22.674 344 178 9 139 480 46 303 2.93e-15 78.6
MsaG010157 AT3G01090.1 22.674 344 178 9 139 480 46 303 2.93e-15 78.6
MsaG010157 AT3G01090.2 22.674 344 178 9 139 480 69 326 3.01e-15 78.6
MsaG010157 AT1G12680.1 31.250 176 104 6 90 261 86 248 6.77e-15 77.4
MsaG010157 AT5G57630.2 32.231 121 79 1 139 259 39 156 8.62e-15 76.6
MsaG010157 AT3G29160.3 21.967 305 160 7 139 443 47 273 9.45e-15 76.3
MsaG010157 AT5G57630.1 32.231 121 79 1 139 259 39 156 9.99e-15 76.6
MsaG010157 AT4G14580.1 24.000 300 152 9 137 432 46 273 1.50e-14 75.9
MsaG010157 AT1G01140.1 23.284 335 169 10 139 472 46 293 1.52e-14 76.3
MsaG010157 AT1G01140.3 23.284 335 169 10 139 472 46 293 1.57e-14 75.9
MsaG010157 AT2G26980.2 22.569 288 146 7 139 423 41 254 1.58e-14 74.3
MsaG010157 AT3G29160.1 21.967 305 160 7 139 443 47 273 2.20e-14 75.9
MsaG010157 AT3G29160.2 21.967 305 160 7 139 443 47 273 2.20e-14 75.9
MsaG010157 AT2G26980.1 22.603 292 149 7 139 427 41 258 2.42e-14 75.1
MsaG010157 AT2G26980.5 22.603 292 149 7 139 427 41 258 2.56e-14 75.1
MsaG010157 AT5G39440.1 22.642 318 165 6 139 456 46 282 2.60e-14 75.5
MsaG010157 AT2G26980.3 22.603 292 149 7 139 427 41 258 2.69e-14 75.1
MsaG010157 AT2G26980.4 22.603 292 149 7 139 427 51 268 3.43e-14 75.1
MsaG010157 AT1G01140.2 22.714 339 168 10 139 472 46 295 1.01e-13 73.6
MsaG010157 AT1G54960.1 32.653 147 81 3 122 259 81 218 2.21e-13 73.2
MsaG010157 AT1G54960.2 32.653 147 81 3 122 259 81 218 2.21e-13 73.2
MsaG010157 AT3G06030.1 32.432 148 82 3 123 261 82 220 2.43e-13 72.8
MsaG010157 AT1G09000.2 33.803 142 86 3 122 259 82 219 2.56e-13 72.8
MsaG010157 AT1G09000.1 33.803 142 86 3 122 259 82 219 3.58e-13 72.4
MsaG010157 AT2G45490.2 44.304 79 44 0 341 419 176 254 5.18e-13 69.3
MsaG010157 AT2G45490.2 30.070 143 93 3 123 264 36 172 9.38e-12 65.9
MsaG010157 AT5G45810.1 29.787 141 93 2 123 263 42 176 1.02e-12 70.5
MsaG010157 AT2G30360.1 29.851 134 91 2 131 263 40 171 1.61e-12 69.7
MsaG010157 AT3G17510.1 21.782 303 155 9 138 435 46 271 2.24e-12 69.3
MsaG010157 AT2G34180.1 30.435 138 90 2 123 260 71 202 2.24e-12 69.7
MsaG010157 AT5G21326.1 28.926 121 84 1 139 259 40 158 4.41e-12 68.6
MsaG010157 AT4G18700.1 29.787 141 93 2 123 263 40 174 4.86e-12 68.6
MsaG010157 AT1G53570.6 31.655 139 88 3 123 259 228 361 1.15e-11 67.4
MsaG010157 AT1G53570.7 31.655 139 88 3 123 259 228 361 1.16e-11 67.4
MsaG010157 AT1G29230.1 29.197 137 91 2 123 259 88 218 1.22e-11 67.4
MsaG010157 AT1G53570.4 31.655 139 88 3 123 259 228 361 1.33e-11 67.4
MsaG010157 AT1G53570.1 31.655 139 88 3 123 259 228 361 1.34e-11 67.4
MsaG010157 AT3G44200.2 29.688 128 85 3 142 264 35 162 1.34e-11 67.8
MsaG010157 AT3G44200.1 29.688 128 85 3 142 264 35 162 1.34e-11 67.8
MsaG010157 AT1G53570.2 31.655 139 88 3 123 259 228 361 1.43e-11 67.4
MsaG010157 AT1G53570.3 31.655 139 88 3 123 259 228 361 1.43e-11 67.4
MsaG010157 AT1G54510.4 29.688 128 85 3 142 264 31 158 2.82e-11 66.2
MsaG010157 AT1G54510.2 29.688 128 85 3 142 264 31 158 2.82e-11 66.2
MsaG010157 AT1G54510.1 29.688 128 85 3 142 264 31 158 2.82e-11 66.2
MsaG010157 AT1G54510.3 29.688 128 85 3 142 264 31 158 2.82e-11 66.2
MsaG010157 AT2G38490.1 33.333 141 80 5 123 259 42 172 9.51e-11 64.3

Find 105 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATAACAATGGTGCAATTT+TGG 0.139007 2:+69400408 MsaT010157.1:CDS
GCTGGCACGGTGGGTTCTTT+TGG 0.155792 2:-69423450 None:intergenic
AGATCTTATCACACAGTTAT+TGG 0.204105 2:+69423482 MsaT010157.1:CDS
CCCTCACCAGACACTATTTC+AGG 0.255306 2:-69423297 None:intergenic
AAGAAACAAAACCAGTTTAA+TGG 0.274820 2:+69423204 MsaT010157.1:CDS
TCTTCTCTGTCTTTAGTATA+AGG 0.276074 2:-69423627 None:intergenic
ATTGATCCTAGCCTTCTTGC+TGG 0.297843 2:-69423513 None:intergenic
TCATTATCCAAGCCTCTAAA+AGG 0.349968 2:-69423387 None:intergenic
GTATAAGGTGGTGGAACATA+AGG 0.354450 2:-69423612 None:intergenic
CAAACTCAGGCCCATTAAAC+TGG 0.357269 2:-69423215 None:intergenic
TTGCTGAGCCCATTGATGTT+AGG 0.359674 2:+69423238 MsaT010157.1:CDS
GCTGTGGATTGGTGGACCTT+AGG 0.360224 2:+69423330 MsaT010157.1:CDS
GAAGTCCAAATACTTCAAAA+TGG 0.361025 2:-69408237 None:intergenic
CAAAGTCTGTGAGCATTATA+TGG 0.368029 2:-69422993 None:intergenic
AGAAACAAAACCAGTTTAAT+GGG 0.372442 2:+69423205 MsaT010157.1:CDS
TATCACACAGTTATTGGTTA+AGG 0.380996 2:+69423488 MsaT010157.1:CDS
AAGAAGGCTAGGATCAATAA+TGG 0.382085 2:+69423518 MsaT010157.1:CDS
TATAAGGTGGTGGAACATAA+GGG 0.389166 2:-69423611 None:intergenic
AGGAAACTAACGTTAAGAAT+TGG 0.392420 2:-69400505 None:intergenic
AGAAGGCTAGGATCAATAAT+GGG 0.404261 2:+69423519 MsaT010157.1:CDS
TTAGGTCCATGTCATTTGTT+GGG 0.405437 2:+69423256 MsaT010157.1:CDS
AAATATCGTGGCTCGAGCTT+TGG 0.409780 2:+69423422 MsaT010157.1:CDS
CAACGATGATGGAAAGATTC+CGG 0.419156 2:+69418192 MsaT010157.1:CDS
GGAGCTTGTTAGTAGGAGTA+AGG 0.422662 2:+69418246 MsaT010157.1:CDS
CTATGCATCAGAAGTGTTGA+TGG 0.422952 2:+69422894 MsaT010157.1:CDS
CTTGAATACCTTCACATGTT+GGG 0.423434 2:+69422919 MsaT010157.1:CDS
GTAACCATAGGGATATTTAG+AGG 0.427816 2:-69400461 None:intergenic
CTTGTTAGTAGGAGTAAGGA+AGG 0.432647 2:+69418250 MsaT010157.1:CDS
GTTAGGTCCATGTCATTTGT+TGG 0.444549 2:+69423255 MsaT010157.1:CDS
GTGTGAATTGGGCTTTGTTA+AGG 0.446627 2:+69423577 MsaT010157.1:CDS
GATCGAACTAATACATTCTC+AGG 0.446844 2:-69422964 None:intergenic
TGTCATCAATAATAATCAAC+AGG 0.446969 2:-69423678 None:intergenic
CTGTGGATTGGTGGACCTTA+GGG 0.463222 2:+69423331 MsaT010157.1:CDS
TTTGCCGTGGCTGGCACGGT+GGG 0.463953 2:-69423459 None:intergenic
TGACATGGACCTAACATCAA+TGG 0.468421 2:-69423247 None:intergenic
TTGATCCTAGCCTTCTTGCT+GGG 0.474888 2:-69423512 None:intergenic
GGTTCAATGAATCCGCCGTC+AGG 0.475293 2:+69418431 MsaT010157.1:CDS
CTCTCACGATGTCGGAAGAT+CGG 0.476646 2:+69408175 MsaT010157.1:CDS
TATAACTTGCTTGTAACCAT+AGG 0.476748 2:-69400473 None:intergenic
CTACCATTGATGCTGCGAAA+TGG 0.477406 2:+69418338 MsaT010157.1:CDS
AAAGATTCCGGCGATGTTTG+CGG 0.478593 2:+69418204 MsaT010157.1:CDS
TAATAATCAACAGGAGTTTG+TGG 0.481895 2:-69423669 None:intergenic
GACATGGACCTAACATCAAT+GGG 0.485341 2:-69423246 None:intergenic
GCGGTGATCTTCACGTTCTC+CGG 0.486794 2:+69418389 MsaT010157.1:CDS
TTGAAGTATTTGGACTTCAC+AGG 0.488196 2:+69408242 MsaT010157.1:CDS
ATAAGAAGGAGCTTGTTAGT+AGG 0.488431 2:+69418239 MsaT010157.1:CDS
CTCGCTGAACTCAACGATGA+TGG 0.490977 2:+69418181 MsaT010157.1:CDS
ATCTTCACGTTCTCCGGCAA+CGG 0.491111 2:+69418395 MsaT010157.1:CDS
CACTGCTGGGACTATACAGT+TGG 0.494527 2:-69423151 None:intergenic
GGTTGGAAACAAGACACTGC+TGG 0.499710 2:-69423165 None:intergenic
TAAGGAAGGAAGAGCGAAGA+CGG 0.506830 2:+69418264 MsaT010157.1:CDS
GACATGGTAGTGCTGTGGAT+TGG 0.510805 2:+69423319 MsaT010157.1:CDS
TTAGCTCCTGAAATAGTGTC+TGG 0.512885 2:+69423291 MsaT010157.1:CDS
TTTCAGGAGCTAAGTATTCG+TGG 0.516681 2:-69423281 None:intergenic
AAACTAACGTTAAGAATTGG+AGG 0.518218 2:-69400502 None:intergenic
ACTTGAATACCTTCACATGT+TGG 0.522765 2:+69422918 MsaT010157.1:CDS
CTGTCTTTAGTATAAGGTGG+TGG 0.527075 2:-69423621 None:intergenic
AAGTCCTCTAAATATCCCTA+TGG 0.528195 2:+69400457 MsaT010157.1:CDS
TTGGAGATTATTATCTGAGC+TGG 0.529430 2:-69423048 None:intergenic
ATAACTTGCTTGTAACCATA+GGG 0.534537 2:-69400472 None:intergenic
ATGGTAGTGCTGTGGATTGG+TGG 0.535208 2:+69423322 MsaT010157.1:CDS
AATGTATTAGTTCGATCAGA+TGG 0.539764 2:+69422970 MsaT010157.1:CDS
GTTGGAAACAAGACACTGCT+GGG 0.545351 2:-69423164 None:intergenic
AAAAGTCACAAAAGAAAAGA+GGG 0.552050 2:+69398917 MsaT010157.1:CDS
GAGCCATTTCGCAGCATCAA+TGG 0.554337 2:-69418341 None:intergenic
ATGGGCTCAGCAACAAACTC+AGG 0.554582 2:-69423228 None:intergenic
TTCGGATACTCTCACGATGT+CGG 0.556702 2:+69408167 MsaT010157.1:CDS
ATAAGGTGGTGGAACATAAG+GGG 0.560134 2:-69423610 None:intergenic
ATGCGTTTGCATATTTAACC+AGG 0.560249 2:+69401366 MsaT010157.1:CDS
CAGATGTATCTGAAAAGTAT+CGG 0.564313 2:+69408113 MsaT010157.1:intron
TCTCTGTCTTTAGTATAAGG+TGG 0.564541 2:-69423624 None:intergenic
CACAAATATGCTCACAAACA+GGG 0.565853 2:-69408274 None:intergenic
AAGGACCCAGCAAGAAGGCT+AGG 0.566657 2:+69423507 MsaT010157.1:CDS
TTCGAATATAAATATCCCTA+AGG 0.566988 2:-69423346 None:intergenic
GATATCAACGCAGATAATGC+AGG 0.570609 2:+69408201 MsaT010157.1:CDS
AGAACCCACCGTGCCAGCCA+CGG 0.572685 2:+69423455 MsaT010157.1:CDS
GGCGAAAGTGATGGATAAGA+AGG 0.573191 2:+69418225 MsaT010157.1:CDS
CATTCTCAGGCTTCAGATCA+CGG 0.578761 2:-69422951 None:intergenic
TAAGGTGGTGGAACATAAGG+GGG 0.582230 2:-69423609 None:intergenic
TTCAGGAGCTAAGTATTCGT+GGG 0.583402 2:-69423280 None:intergenic
GGGTATTATGCATGAAGATG+AGG 0.588431 2:-69423130 None:intergenic
TCCTGAAATAGTGTCTGGTG+AGG 0.592404 2:+69423296 MsaT010157.1:CDS
ACTTTCGCCGCAAACATCGC+CGG 0.593418 2:-69418211 None:intergenic
GATGTTTGCGGCGAAAGTGA+TGG 0.594332 2:+69418216 MsaT010157.1:CDS
GGCAACGGCAGCAAAACAAA+CGG 0.594934 2:+69418410 MsaT010157.1:CDS
ACTGCTGGGACTATACAGTT+GGG 0.600875 2:-69423150 None:intergenic
CCTGAAATAGTGTCTGGTGA+GGG 0.604464 2:+69423297 MsaT010157.1:CDS
ATATGCTCACAAACAGGGAA+TGG 0.607455 2:-69408269 None:intergenic
TGGTTAAGGACCCAGCAAGA+AGG 0.615648 2:+69423502 MsaT010157.1:CDS
AGAACGTGAAGATCACCGCC+AGG 0.616021 2:-69418385 None:intergenic
ACACTATTCCCAACATGTGA+AGG 0.617621 2:-69422927 None:intergenic
AAATTGTGAGTGTTCACTGT+GGG 0.628128 2:-69423106 None:intergenic
TCAATGGTAGCATAAAGAGT+AGG 0.628667 2:-69418325 None:intergenic
GAAGGCTAGGATCAATAATG+GGG 0.632594 2:+69423520 MsaT010157.1:CDS
TGAGGGACATGGTAGTGCTG+TGG 0.637250 2:+69423314 MsaT010157.1:CDS
GTGGGTCCCAACAAATGACA+TGG 0.643455 2:-69423262 None:intergenic
GATTATTATCTGAGCTGGTG+TGG 0.648376 2:-69423043 None:intergenic
TGGTCCTCCAGGTATAACAA+TGG 0.667918 2:+69400397 MsaT010157.1:intron
AATTGTGAGTGTTCACTGTG+GGG 0.682910 2:-69423105 None:intergenic
TGGAAGTGCTTACCTGACGG+CGG 0.700077 2:-69418443 None:intergenic
ATTAACTCTAGCAAATATCG+TGG 0.701691 2:+69423410 MsaT010157.1:CDS
AAGGCTAGGATCAATAATGG+GGG 0.726443 2:+69423521 MsaT010157.1:CDS
ATAGTGTCTGGTGAGGGACA+TGG 0.727885 2:+69423303 MsaT010157.1:CDS
CATCATCGTTGAGTTCAGCG+AGG 0.734744 2:-69418180 None:intergenic
CAAATTGTGAGTGTTCACTG+TGG 0.769274 2:-69423107 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 69398912 69423695 69398912 ID=MsaG010157
Chr2 mRNA 69398912 69423695 69398912 ID=MsaT010157.1;Parent=MsaG010157
Chr2 exon 69398912 69398943 69398912 ID=MsaT010157.1.exon1;Parent=MsaT010157.1
Chr2 CDS 69398912 69398943 69398912 ID=cds.MsaT010157.1;Parent=MsaT010157.1
Chr2 exon 69400408 69400516 69400408 ID=MsaT010157.1.exon2;Parent=MsaT010157.1
Chr2 CDS 69400408 69400516 69400408 ID=cds.MsaT010157.1;Parent=MsaT010157.1
Chr2 exon 69401362 69401416 69401362 ID=MsaT010157.1.exon3;Parent=MsaT010157.1
Chr2 CDS 69401362 69401416 69401362 ID=cds.MsaT010157.1;Parent=MsaT010157.1
Chr2 exon 69408116 69408281 69408116 ID=MsaT010157.1.exon4;Parent=MsaT010157.1
Chr2 CDS 69408116 69408281 69408116 ID=cds.MsaT010157.1;Parent=MsaT010157.1
Chr2 exon 69418171 69418452 69418171 ID=MsaT010157.1.exon5;Parent=MsaT010157.1
Chr2 CDS 69418171 69418452 69418171 ID=cds.MsaT010157.1;Parent=MsaT010157.1
Chr2 exon 69422891 69423695 69422891 ID=MsaT010157.1.exon6;Parent=MsaT010157.1
Chr2 CDS 69422891 69423695 69422891 ID=cds.MsaT010157.1;Parent=MsaT010157.1
Gene Sequence

>MsaT010157.1

ATGAAAAAAGTCACAAAAGAAAAGAGGGAAAAGTATAACAATGGTGCAATTTTGGGTCCTCGTTTTTCAATTGTGAAAATTAAGTCCTCTAAATATCCCTATGGTTACAAGCAAGTTATAACTAGTCCTCCAATTCTTAACAATAATGCGTTTGCATATTTAACCAGGAACACAGCTAAAAAAAATACTCCTCTAGATGTATCTGAAAAGTATCGGATAATTGTTTTTAAAAAAATAAAATTTAATCTTCGGATACTCTCACGATGTCGGAAGATCGGACAGATATCAACGCAGATAATGCAGGATCAAGACGTCATCCATTTTGAAGTATTTGGACTTCACAGGAATGCCATTCCCTGTTTCTCTGTCTACCTCGCTGAACTCAACGATGATGGAAAGATTCCGGCGATGTTTGCGGCGAAAGTGATGGATAAGAAGGAGCTTGTTAGTAGGAGTAAGGAAGGAAGAGCGAAGACGGAGAGAGAAATACTTGAATCTCTTGATCATCCTTTTTTGCCTACTCTTTATGCTACCATTGATGCTGCGAAATGGCTCTGTCTTTTGACGGAGTTTTGTCCTGGCGGTGATCTTCACGTTCTCCGGCAACGGCAGCAAAACAAACGGTTCAATGAATCCGCCGTCAGATTCTATGCATCAGAAGTGTTGATGGCACTTGAATACCTTCACATGTTGGGAATAGTGTACCGTGATCTGAAGCCTGAGAATGTATTAGTTCGATCAGATGGCCATATAATGCTCACAGACTTTGACCTCTCATTAAAATGTGATGATAGTTCCACACCAGCTCAGATAATAATCTCCAATCAAAACTCTCCTCAAGTAGCCCCACCAAAAAATCCCCACAGTGAACACTCACAATTTGCCTCATCTTCATGCATAATACCCAACTGTATAGTCCCAGCAGTGTCTTGTTTCCAACCAAAACGCAAAAGAAAGAAGAAACAAAACCAGTTTAATGGGCCTGAGTTTGTTGCTGAGCCCATTGATGTTAGGTCCATGTCATTTGTTGGGACCCACGAATACTTAGCTCCTGAAATAGTGTCTGGTGAGGGACATGGTAGTGCTGTGGATTGGTGGACCTTAGGGATATTTATATTCGAATTATTTTATGGTGTCACACCTTTTAGAGGCTTGGATAATGAATTAACTCTAGCAAATATCGTGGCTCGAGCTTTGGAGTTCCCAAAAGAACCCACCGTGCCAGCCACGGCAAAAGATCTTATCACACAGTTATTGGTTAAGGACCCAGCAAGAAGGCTAGGATCAATAATGGGGGCTTCTGCAATCAAACACCACTCATTTTTTCAAGGTGTGAATTGGGCTTTGTTAAGGTGTACAACTCCCCCTTATGTTCCACCACCTTATACTAAAGACAGAGAAGATGTATCTGATGATAGTTGTCCACAAACTCCTGTTGATTATTATTGA
Protein sequence

>MsaT010157.1

MKKVTKEKREKYNNGAILGPRFSIVKIKSSKYPYGYKQVITSPPILNNNAFAYLTRNTAKKNTPLDVSEKYRIIVFKKIKFNLRILSRCRKIGQISTQIMQDQDVIHFEVFGLHRNAIPCFSVYLAELNDDGKIPAMFAAKVMDKKELVSRSKEGRAKTEREILESLDHPFLPTLYATIDAAKWLCLLTEFCPGGDLHVLRQRQQNKRFNESAVRFYASEVLMALEYLHMLGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCDDSSTPAQIIISNQNSPQVAPPKNPHSEHSQFASSSCIIPNCIVPAVSCFQPKRKRKKKQNQFNGPEFVAEPIDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFIFELFYGVTPFRGLDNELTLANIVARALEFPKEPTVPATAKDLITQLLVKDPARRLGSIMGASAIKHHSFFQGVNWALLRCTTPPYVPPPYTKDREDVSDDSCPQTPVDYY*