AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG010202

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG010202 MtrunA17_Chr2g0321631 88.976 254 23 4 1 254 1 249 1.69e-164 455
MsaG010202 MtrunA17_Chr4g0026141 60.526 266 86 8 1 253 1 260 6.64e-105 304
MsaG010202 MtrunA17_Chr7g0266701 47.348 264 117 6 1 254 1 252 1.21e-78 238
MsaG010202 MtrunA17_Chr4g0076731 44.099 161 75 4 6 164 56 203 1.02e-37 137
MsaG010202 MtrunA17_Chr6g0453131 41.954 174 87 6 1 167 12 178 2.21e-37 135
MsaG010202 MtrunA17_Chr4g0038751 42.529 174 80 6 6 175 17 174 2.80e-37 133
MsaG010202 MtrunA17_Chr6g0481091 36.275 204 118 5 5 206 7 200 2.35e-36 129
MsaG010202 MtrunA17_Chr8g0359921 46.795 156 75 5 5 160 15 162 2.73e-36 131
MsaG010202 MtrunA17_Chr5g0417791 45.223 157 78 5 5 160 4 153 3.73e-36 129
MsaG010202 MtrunA17_Chr5g0405211 42.246 187 93 7 5 188 9 183 1.29e-35 129
MsaG010202 MtrunA17_Chr5g0433781 36.087 230 122 7 5 226 7 219 1.92e-35 133
MsaG010202 MtrunA17_Chr5g0400461 46.012 163 68 7 5 159 7 157 2.93e-35 128
MsaG010202 MtrunA17_Chr2g0318081 45.570 158 72 5 5 160 17 162 3.46e-35 129
MsaG010202 MtrunA17_Chr1g0200561 49.254 134 58 5 5 135 20 146 3.63e-35 128
MsaG010202 MtrunA17_Chr4g0042561 42.675 157 82 4 5 160 10 159 7.19e-35 125
MsaG010202 MtrunA17_Chr2g0309331 45.926 135 62 4 5 135 11 138 7.28e-35 127
MsaG010202 MtrunA17_Chr4g0054791 35.945 217 118 7 5 209 7 214 1.87e-34 125
MsaG010202 MtrunA17_Chr2g0309891 44.937 158 76 7 5 160 7 155 2.44e-34 126
MsaG010202 MtrunA17_Chr8g0372121 50.000 134 57 6 5 135 7 133 2.63e-34 125
MsaG010202 MtrunA17_Chr8g0346001 36.538 208 107 9 5 199 16 211 5.09e-34 127
MsaG010202 MtrunA17_Chr3g0109821 42.405 158 80 5 5 160 7 155 6.46e-34 129
MsaG010202 MtrunA17_Chr5g0417001 34.703 219 119 9 6 213 16 221 8.19e-34 125
MsaG010202 MtrunA17_Chr4g0017921 42.424 165 79 7 5 166 9 160 1.20e-33 124
MsaG010202 MtrunA17_Chr3g0144271 45.342 161 74 6 5 161 24 174 1.23e-33 125
MsaG010202 MtrunA17_Chr4g0018391 46.269 134 62 5 5 135 8 134 2.41e-33 123
MsaG010202 MtrunA17_Chr1g0183741 43.038 158 74 6 5 160 11 154 6.51e-33 120
MsaG010202 MtrunA17_Chr8g0384721 40.341 176 85 7 5 173 8 170 1.03e-32 120
MsaG010202 MtrunA17_Chr8g0361731 39.634 164 82 5 6 160 16 171 1.35e-32 122
MsaG010202 MtrunA17_Chr4g0060931 37.975 158 90 4 3 160 16 165 3.23e-32 120
MsaG010202 MtrunA17_Chr5g0398971 46.269 134 63 5 5 135 8 135 3.45e-32 120
MsaG010202 MtrunA17_Chr3g0130731 41.317 167 88 5 5 170 8 165 3.63e-32 119
MsaG010202 MtrunA17_Chr1g0147421 43.478 138 66 4 2 135 25 154 4.33e-32 120
MsaG010202 MtrunA17_Chr3g0124761 41.899 179 90 6 5 180 8 175 4.43e-32 119
MsaG010202 MtrunA17_Chr7g0252971 38.922 167 83 5 5 160 9 167 4.64e-32 120
MsaG010202 MtrunA17_Chr3g0139331 41.818 165 84 6 2 165 9 162 5.01e-32 120
MsaG010202 MtrunA17_Chr2g0316971 44.697 132 66 3 5 135 24 149 5.02e-32 120
MsaG010202 MtrunA17_Chr2g0312321 42.949 156 78 6 5 160 12 156 6.09e-32 119
MsaG010202 MtrunA17_Chr7g0261411 42.038 157 77 5 5 160 11 154 9.15e-32 118
MsaG010202 MtrunA17_Chr4g0047841 40.761 184 78 7 5 165 16 191 1.04e-31 119
MsaG010202 MtrunA17_Chr3g0091921 40.252 159 81 5 5 160 17 164 1.59e-31 118
MsaG010202 MtrunA17_Chr4g0056541 41.509 159 78 7 5 160 8 154 1.96e-31 119
MsaG010202 MtrunA17_Chr7g0217711 44.615 130 65 4 6 135 21 143 2.12e-31 114
MsaG010202 MtrunA17_Chr6g0484441 40.252 159 83 6 2 160 3 149 2.84e-31 117
MsaG010202 MtrunA17_Chr2g0326361 32.031 256 145 8 5 242 15 259 2.88e-31 117
MsaG010202 MtrunA17_Chr6g0453451 38.824 170 96 4 5 174 21 182 3.46e-31 117
MsaG010202 MtrunA17_Chr3g0128111 40.645 155 82 6 7 160 45 190 7.95e-31 114
MsaG010202 MtrunA17_Chr7g0214071 42.138 159 75 6 5 161 16 159 1.36e-30 114
MsaG010202 MtrunA17_Chr5g0428991 41.667 156 83 5 5 160 26 173 4.04e-30 118
MsaG010202 MtrunA17_Chr2g0318101 37.755 196 95 8 5 187 16 197 5.62e-30 115
MsaG010202 MtrunA17_Chr3g0130101 40.252 159 87 6 6 164 9 159 8.64e-30 114
MsaG010202 MtrunA17_Chr7g0263931 40.000 165 87 5 5 165 12 168 1.15e-29 113
MsaG010202 MtrunA17_Chr6g0461661 41.791 134 71 3 3 135 17 144 1.78e-29 114
MsaG010202 MtrunA17_Chr2g0311651 39.037 187 95 8 2 174 19 200 2.19e-29 112
MsaG010202 MtrunA17_Chr8g0385991 41.250 160 83 4 5 161 15 166 2.24e-29 110
MsaG010202 MtrunA17_Chr7g0217721 44.961 129 64 4 7 135 22 143 3.60e-29 112
MsaG010202 MtrunA17_Chr3g0128151 40.385 156 85 5 5 160 23 170 4.14e-29 115
MsaG010202 MtrunA17_Chr8g0345671 41.139 158 80 5 3 159 10 155 4.20e-29 113
MsaG010202 MtrunA17_Chr8g0364791 38.365 159 90 6 6 164 8 158 7.75e-29 113
MsaG010202 MtrunA17_Chr1g0197351 38.608 158 89 4 6 160 44 196 1.22e-28 113
MsaG010202 MtrunA17_Chr3g0092671 36.875 160 93 4 6 165 7 158 1.90e-28 113
MsaG010202 MtrunA17_Chr7g0253011 36.646 161 92 4 3 160 16 169 2.17e-28 111
MsaG010202 MtrunA17_Chr1g0201021 45.185 135 69 4 4 138 19 148 3.81e-28 112
MsaG010202 MtrunA17_Chr8g0345711 40.580 138 77 4 5 141 13 146 1.02e-27 104
MsaG010202 MtrunA17_Chr3g0131911 40.123 162 83 4 5 160 15 168 1.05e-27 106
MsaG010202 MtrunA17_Chr8g0345691 37.500 160 87 5 1 159 9 156 1.43e-27 109
MsaG010202 MtrunA17_Chr2g0311661 38.235 170 88 6 2 159 18 182 2.38e-27 106
MsaG010202 MtrunA17_Chr5g0442771 37.576 165 85 5 6 160 20 176 3.31e-27 106
MsaG010202 MtrunA17_Chr1g0197361 36.875 160 93 5 6 165 10 161 3.84e-27 109
MsaG010202 MtrunA17_Chr8g0384201 37.107 159 92 6 6 164 8 158 5.34e-27 108
MsaG010202 MtrunA17_Chr2g0321741 45.455 110 54 4 25 134 13 116 1.54e-23 97.4
MsaG010202 MtrunA17_Chr8g0345721 34.337 166 79 5 7 144 38 201 8.62e-23 92.8
MsaG010202 MtrunA17_Chr4g0050701 41.353 133 61 5 5 135 12 129 8.70e-23 92.0
MsaG010202 MtrunA17_Chr8g0345731 38.060 134 75 5 5 134 25 154 1.56e-21 88.2
MsaG010202 MtrunA17_Chr8g0345701 37.584 149 70 7 5 137 8 149 1.71e-21 88.2
MsaG010202 MtrunA17_Chr3g0113001 52.113 71 33 1 65 135 20 89 7.12e-20 86.7
MsaG010202 MtrunA17_Chr8g0345741 37.190 121 71 4 15 134 2 118 1.67e-19 82.4
MsaG010202 MtrunA17_Chr3g0113031 56.140 57 24 1 79 135 9 64 7.12e-16 75.1
MsaG010202 MtrunA17_Chr7g0243371 40.449 89 47 3 61 147 14 98 2.51e-14 67.8
MsaG010202 MtrunA17_Chr7g0251661 30.769 143 92 3 3 145 9 144 3.65e-14 68.2
MsaG010202 MtrunA17_Chr3g0130321 29.697 165 98 5 5 162 8 161 4.25e-14 69.3
MsaG010202 MtrunA17_Chr8g0384351 31.410 156 77 7 5 160 11 136 3.31e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG010202 AT5G22380.1 54.400 250 88 5 7 253 8 234 4.42e-86 256
MsaG010202 AT3G44350.2 51.587 252 108 5 2 253 3 240 7.88e-84 251
MsaG010202 AT3G44350.1 57.500 160 65 2 2 161 3 159 5.94e-62 192
MsaG010202 AT4G17980.1 46.835 158 74 6 5 159 7 157 6.70e-39 136
MsaG010202 AT4G17980.2 46.835 158 74 6 5 159 7 157 9.18e-39 137
MsaG010202 AT2G02450.1 43.949 157 73 4 6 160 53 196 3.77e-38 137
MsaG010202 AT2G02450.2 43.949 157 73 4 6 160 53 196 6.59e-38 137
MsaG010202 AT2G17040.1 42.105 171 79 6 6 172 8 162 1.16e-37 133
MsaG010202 AT3G15500.1 47.468 158 69 6 5 160 15 160 6.20e-37 132
MsaG010202 AT3G17730.1 38.144 194 102 6 5 196 7 184 7.12e-37 130
MsaG010202 AT5G66300.1 46.541 159 71 7 5 160 13 160 1.72e-36 131
MsaG010202 AT5G46590.1 43.949 157 78 5 5 159 7 155 1.26e-35 129
MsaG010202 AT1G52890.1 45.570 158 72 5 5 160 15 160 1.49e-35 129
MsaG010202 AT4G10350.1 41.753 194 93 9 5 192 10 189 2.37e-35 129
MsaG010202 AT3G12910.1 42.169 166 80 5 6 160 23 183 4.54e-35 127
MsaG010202 AT1G69490.1 41.975 162 86 4 5 165 10 164 6.32e-35 126
MsaG010202 AT4G27410.2 44.937 158 73 7 5 160 15 160 7.58e-35 127
MsaG010202 AT1G32510.1 43.558 163 76 6 5 159 7 161 8.38e-35 126
MsaG010202 AT4G36160.1 42.286 175 77 7 5 176 11 164 9.02e-35 128
MsaG010202 AT4G36160.3 42.286 175 77 7 5 176 11 164 9.02e-35 128
MsaG010202 AT4G36160.2 42.286 175 77 7 5 176 15 168 9.36e-35 128
MsaG010202 AT2G24430.2 40.625 160 84 4 2 160 14 163 1.45e-34 126
MsaG010202 AT2G24430.1 40.625 160 84 4 2 160 14 163 1.45e-34 126
MsaG010202 AT2G18060.3 45.283 159 72 7 5 160 10 156 1.55e-34 127
MsaG010202 AT2G18060.1 45.283 159 72 7 5 160 10 156 1.55e-34 127
MsaG010202 AT4G27410.3 42.604 169 78 7 5 160 15 177 2.67e-34 125
MsaG010202 AT5G61430.1 41.139 158 85 4 3 160 15 164 3.58e-34 126
MsaG010202 AT4G35580.1 43.750 160 82 6 1 160 6 157 3.71e-34 129
MsaG010202 AT4G35580.3 43.750 160 82 6 1 160 6 157 3.83e-34 129
MsaG010202 AT4G35580.2 43.750 160 82 6 1 160 6 157 3.94e-34 129
MsaG010202 AT5G17260.1 43.671 158 78 5 5 160 7 155 4.03e-34 128
MsaG010202 AT3G49530.2 41.250 160 87 5 1 160 10 162 4.33e-34 127
MsaG010202 AT5G46590.2 44.079 152 75 5 5 154 7 150 6.11e-34 124
MsaG010202 AT1G65910.1 43.590 156 80 4 5 160 7 154 6.75e-34 129
MsaG010202 AT3G49530.1 41.250 160 87 5 1 160 10 162 7.98e-34 127
MsaG010202 AT5G24590.2 45.522 134 69 2 5 138 14 143 1.30e-33 126
MsaG010202 AT1G33060.1 42.500 160 84 5 1 160 21 172 1.33e-33 128
MsaG010202 AT1G33060.2 42.500 160 84 5 1 160 21 172 1.44e-33 128
MsaG010202 AT3G61910.1 36.744 215 108 8 5 198 12 219 1.90e-33 124
MsaG010202 AT1G71930.2 48.507 134 59 5 5 135 10 136 2.67e-33 123
MsaG010202 AT1G71930.1 48.507 134 59 5 5 135 10 136 2.67e-33 123
MsaG010202 AT1G79580.3 45.926 135 62 4 5 135 18 145 4.46e-33 124
MsaG010202 AT1G79580.5 45.926 135 62 4 5 135 18 145 4.46e-33 124
MsaG010202 AT1G79580.4 45.926 135 62 4 5 135 18 145 4.46e-33 124
MsaG010202 AT1G79580.2 45.926 135 62 4 5 135 18 145 4.46e-33 124
MsaG010202 AT1G79580.1 45.926 135 62 4 5 135 18 145 4.46e-33 124
MsaG010202 AT1G76420.1 42.073 164 78 6 5 164 23 173 4.68e-33 123
MsaG010202 AT1G61110.1 41.916 167 78 5 5 160 17 175 5.02e-33 122
MsaG010202 AT3G18400.1 43.210 162 75 7 2 160 3 150 9.03e-33 122
MsaG010202 AT5G07680.2 39.241 158 88 4 3 160 2 151 1.94e-32 120
MsaG010202 AT5G07680.1 39.241 158 88 4 3 160 16 165 2.27e-32 121
MsaG010202 AT1G56010.2 41.667 156 85 4 5 160 20 169 3.90e-32 120
MsaG010202 AT5G62380.2 38.608 158 84 5 5 160 8 154 4.48e-32 120
MsaG010202 AT5G62380.1 38.608 158 84 5 5 160 8 154 4.48e-32 120
MsaG010202 AT1G26870.1 45.714 140 62 6 1 135 12 142 4.61e-32 122
MsaG010202 AT1G01720.1 42.683 164 81 5 5 165 8 161 5.33e-32 119
MsaG010202 AT5G08790.1 36.279 215 105 8 5 197 8 212 5.55e-32 119
MsaG010202 AT1G33280.1 45.714 140 66 5 5 141 9 141 8.42e-32 119
MsaG010202 AT3G04070.2 40.678 177 86 6 5 170 11 179 1.25e-31 119
MsaG010202 AT3G15170.1 39.024 164 92 4 5 167 21 177 1.54e-31 118
MsaG010202 AT2G46770.1 40.828 169 80 8 5 160 17 178 1.54e-31 119
MsaG010202 AT1G54330.1 42.949 156 78 5 5 160 7 151 1.65e-31 118
MsaG010202 AT3G10490.1 38.854 157 85 5 6 160 29 176 2.04e-31 116
MsaG010202 AT1G77450.1 37.500 208 106 8 5 207 11 199 2.07e-31 116
MsaG010202 AT1G32770.1 47.015 134 61 6 5 135 17 143 2.58e-31 119
MsaG010202 AT5G63790.1 35.945 217 116 8 5 216 51 249 2.76e-31 117
MsaG010202 AT5G18270.1 37.500 160 93 3 1 160 18 170 2.85e-31 118
MsaG010202 AT5G63790.2 35.945 217 116 8 5 216 61 259 3.82e-31 117
MsaG010202 AT3G03200.1 41.401 157 83 5 5 160 7 155 5.19e-31 120
MsaG010202 AT3G12977.1 38.462 156 87 4 5 160 19 165 6.86e-31 116
MsaG010202 AT3G04060.1 37.975 158 91 3 3 160 19 169 7.22e-31 117
MsaG010202 AT5G18270.2 36.875 160 94 3 1 160 18 170 8.00e-31 117
MsaG010202 AT3G10480.1 39.490 157 84 5 6 160 29 176 8.20e-31 119
MsaG010202 AT1G12260.2 45.522 134 63 5 5 135 8 134 8.68e-31 117
MsaG010202 AT2G43000.1 39.490 157 82 5 6 160 20 165 1.08e-30 115
MsaG010202 AT1G12260.1 45.522 134 63 5 5 135 8 134 1.38e-30 117
MsaG010202 AT3G04070.1 42.568 148 71 4 5 146 11 150 1.92e-30 116
MsaG010202 AT5G39610.1 38.608 158 89 4 3 160 19 168 5.10e-30 114
MsaG010202 AT3G10480.2 38.854 157 84 5 6 160 29 175 6.09e-30 116
MsaG010202 AT5G39820.1 41.379 145 76 5 6 148 22 159 6.16e-30 114
MsaG010202 AT3G10490.2 38.854 157 85 5 6 160 29 176 1.18e-29 115
MsaG010202 AT1G62700.1 44.776 134 64 5 5 135 8 134 1.28e-29 115
MsaG010202 AT1G62700.2 44.776 134 64 5 5 135 8 134 1.28e-29 115
MsaG010202 AT3G29035.1 37.975 158 90 4 3 160 23 172 1.68e-29 113
MsaG010202 AT5G53950.1 44.361 133 65 4 5 135 18 143 2.52e-29 114
MsaG010202 AT2G33480.2 39.873 158 78 5 5 161 16 157 5.14e-29 110
MsaG010202 AT1G34190.1 39.506 162 90 5 4 165 16 169 1.23e-28 114
MsaG010202 AT3G15510.1 40.964 166 75 7 8 160 21 176 1.25e-28 112
MsaG010202 AT3G44290.2 43.939 132 68 4 6 137 16 141 1.85e-28 108
MsaG010202 AT3G10500.1 37.500 160 92 5 6 165 11 162 1.95e-28 113
MsaG010202 AT2G33480.1 39.506 162 75 6 5 161 16 159 4.15e-28 108
MsaG010202 AT3G44290.1 43.182 132 69 4 6 137 16 141 4.75e-28 109
MsaG010202 AT1G34180.3 44.444 135 70 5 4 138 16 145 5.45e-28 111
MsaG010202 AT2G27300.1 42.308 130 67 4 6 134 16 138 8.13e-28 109
MsaG010202 AT5G22290.1 42.636 129 68 4 6 134 23 145 8.19e-28 109
MsaG010202 AT4G28530.1 37.427 171 81 5 5 160 11 170 1.03e-27 109
MsaG010202 AT1G34180.1 44.444 135 70 5 4 138 16 145 1.15e-27 111
MsaG010202 AT5G13180.1 44.361 133 62 4 5 135 15 137 1.17e-27 107
MsaG010202 AT5G64060.1 38.125 160 89 6 6 164 8 158 2.17e-27 108
MsaG010202 AT5G09330.5 44.615 130 67 4 6 135 8 132 4.24e-27 109
MsaG010202 AT5G09330.2 44.615 130 67 4 6 135 8 132 4.24e-27 109
MsaG010202 AT5G09330.4 44.615 130 67 4 6 135 8 132 4.24e-27 109
MsaG010202 AT5G09330.3 44.615 130 67 4 6 135 8 132 4.24e-27 109
MsaG010202 AT5G09330.1 44.615 130 67 4 6 135 8 132 4.24e-27 109
MsaG010202 AT5G04410.1 38.125 160 91 6 6 165 11 162 7.10e-27 108
MsaG010202 AT1G34180.4 40.690 145 73 5 4 138 16 157 3.06e-26 106
MsaG010202 AT1G34180.2 40.690 145 73 5 4 138 16 157 6.97e-26 106
MsaG010202 AT3G04420.2 33.121 157 94 3 3 159 2 147 5.98e-25 100
MsaG010202 AT3G10480.3 32.979 188 86 6 6 160 29 209 6.02e-25 103
MsaG010202 AT3G04420.1 33.121 157 94 3 3 159 2 147 1.91e-24 100
MsaG010202 AT4G01550.1 40.769 130 72 3 7 134 7 133 4.18e-23 97.8
MsaG010202 AT1G52880.1 38.596 171 87 5 8 168 21 183 2.09e-22 94.4
MsaG010202 AT5G04395.1 34.965 143 76 5 5 134 29 167 2.05e-21 89.0
MsaG010202 AT1G32870.2 36.875 160 93 5 6 165 12 163 3.48e-21 92.8
MsaG010202 AT1G32870.1 36.875 160 93 5 6 165 12 163 3.77e-21 92.4
MsaG010202 AT1G32870.3 36.875 160 93 5 6 165 48 199 5.66e-21 92.0
MsaG010202 AT4G10350.2 40.690 145 72 7 54 192 6 142 7.54e-21 89.7
MsaG010202 AT4G01520.1 36.765 136 82 2 1 134 1 134 1.02e-20 89.4
MsaG010202 AT1G56010.1 42.268 97 55 1 64 160 7 102 3.86e-20 87.0
MsaG010202 AT4G01540.3 35.897 156 86 5 7 159 7 151 4.77e-20 89.0
MsaG010202 AT4G01540.2 39.695 131 73 4 7 134 7 134 5.16e-20 89.0
MsaG010202 AT1G02230.1 36.567 134 78 3 5 136 4 132 5.20e-20 88.2
MsaG010202 AT4G01540.1 39.695 131 73 4 7 134 7 134 5.91e-20 89.0
MsaG010202 AT4G01540.4 35.897 156 86 5 7 159 7 151 6.20e-20 88.2
MsaG010202 AT3G12977.2 40.385 104 59 2 57 160 12 112 6.58e-20 85.9
MsaG010202 AT5G64530.2 39.394 132 59 7 5 134 4 116 7.52e-20 84.0
MsaG010202 AT5G64530.1 37.879 132 61 6 5 134 4 116 1.04e-19 84.3
MsaG010202 AT5G61430.2 41.237 97 55 2 64 160 7 101 2.12e-19 85.5
MsaG010202 AT1G02250.1 31.210 157 94 4 5 159 4 148 2.69e-18 83.6
MsaG010202 AT1G01010.1 35.461 141 79 4 1 134 1 136 3.22e-18 83.6
MsaG010202 AT1G02220.1 32.576 132 83 3 3 134 2 127 1.26e-16 79.0
MsaG010202 AT2G33480.3 39.216 102 57 3 61 161 5 102 7.09e-16 74.3
MsaG010202 AT3G56530.1 30.573 157 100 5 5 161 53 200 8.12e-16 75.9
MsaG010202 AT4G28530.2 36.364 110 52 2 5 100 11 116 1.72e-14 72.4
MsaG010202 AT2G43000.2 42.500 80 43 2 81 160 11 87 4.82e-14 69.3
MsaG010202 AT5G50820.1 29.814 161 96 5 5 162 18 164 9.58e-14 68.2
MsaG010202 AT5G14000.1 30.570 193 114 7 5 193 16 192 5.98e-13 66.2
MsaG010202 AT3G55210.1 26.786 168 101 5 5 161 12 168 1.26e-12 66.6
MsaG010202 AT2G18060.2 43.836 73 35 2 88 160 2 68 2.33e-12 65.9
MsaG010202 AT3G10490.4 41.026 78 43 2 83 160 2 76 4.30e-12 65.5
MsaG010202 AT3G10490.3 41.026 78 43 2 83 160 2 76 4.30e-12 65.5

Find 75 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTAACAACAAAGTTAT+TGG 0.141170 2:+69947183 MsaT010202.1:CDS
GGGAATGGGAACAACTAAAT+TGG 0.237761 2:+69948056 MsaT010202.1:CDS
GGTTCATCAACCCCATTATT+TGG 0.243110 2:-69948019 None:intergenic
TGGAATGATGTACCAAATAA+TGG 0.268563 2:+69948007 MsaT010202.1:CDS
TGCTTGTAATCAGCATTTGC+AGG 0.308629 2:+69947024 MsaT010202.1:intron
ACAACAAAGTTATTGGAATA+AGG 0.320903 2:+69947190 MsaT010202.1:CDS
ATGAACCTGACGAGCCTCTT+TGG 0.329425 2:+69948035 MsaT010202.1:CDS
TCAAGTTGTAACTCCGTCTT+TGG 0.337961 2:-69947848 None:intergenic
CCTGATGCTGCTCTTAATAT+TGG 0.341714 2:+69947965 MsaT010202.1:CDS
GGAATGATGTACCAAATAAT+GGG 0.347934 2:+69948008 MsaT010202.1:CDS
TGAACCTGACGAGCCTCTTT+GGG 0.365510 2:+69948036 MsaT010202.1:CDS
CCACAAGATGTTGTTCTGTT+TGG 0.369650 2:-69947123 None:intergenic
CATCTGGAAGGAAAACAAAA+TGG 0.371311 2:+69947244 MsaT010202.1:CDS
GAACAACATCTTGTGGGTAT+TGG 0.373317 2:+69947130 MsaT010202.1:CDS
TCCGTCTTTGGCCCCTCTAA+TGG 0.374360 2:-69947836 None:intergenic
GTGTCGCGTTTATGTGATAT+CGG 0.388670 2:+69947787 MsaT010202.1:CDS
CATTCCCAAAGAGGCTCGTC+AGG 0.403826 2:-69948040 None:intergenic
CCAATATTAAGAGCAGCATC+AGG 0.411283 2:-69947965 None:intergenic
CTCAACTCTCTCTCTTGTCT+TGG 0.417219 2:-69947090 None:intergenic
GAGGGTCAAGTGGCACGAAT+TGG 0.422284 2:+69947987 MsaT010202.1:CDS
TACCTTAGGAGGGTTTGTAT+TGG 0.427109 2:-69947307 None:intergenic
ATTTGATCGAAGACCATTAG+AGG 0.450948 2:+69947823 MsaT010202.1:CDS
TACATAGGAAAAGCTCCATC+TGG 0.458200 2:+69947228 MsaT010202.1:CDS
TGACGAGCCTCTTTGGGAAT+GGG 0.462600 2:+69948042 MsaT010202.1:CDS
TTAGGAGGGTTTGTATTGGA+TGG 0.467242 2:-69947303 None:intergenic
CTGACGAGCCTCTTTGGGAA+TGG 0.476253 2:+69948041 MsaT010202.1:CDS
GGATGGATCAGATGGTTCAA+TGG 0.492070 2:-69947286 None:intergenic
TTGTGGGTATTGGAAAGCTA+CGG 0.496227 2:+69947140 MsaT010202.1:CDS
ATACCTGTCATTGATATCAA+TGG 0.504577 2:+69946065 MsaT010202.1:CDS
AATTGTGTTACGTACTTGGA+AGG 0.510602 2:-69946103 None:intergenic
TACGTACTTGGAAGGTTCCA+TGG 0.519792 2:-69946095 None:intergenic
TGTCGCGTTTATGTGATATC+GGG 0.520469 2:+69947788 MsaT010202.1:CDS
GATGCTGCTCTTAATATTGG+AGG 0.523753 2:+69947968 MsaT010202.1:CDS
AGTTGTTCCCATTCCCAAAG+AGG 0.523806 2:-69948049 None:intergenic
TTAGAAGAGTAAACGTAGCT+AGG 0.528675 2:-69947168 None:intergenic
CCTACAGAAGAAGAGCTAGT+TGG 0.532376 2:+69945987 MsaT010202.1:CDS
TGTGGGTATTGGAAAGCTAC+GGG 0.533051 2:+69947141 MsaT010202.1:CDS
TTTGTATTGGATGGATCAGA+TGG 0.533121 2:-69947294 None:intergenic
ACTTCCCACTCGGGAGAGGT+AGG 0.537886 2:+69947935 MsaT010202.1:CDS
CAAGAGAGAGAGTTGAGAGG+TGG 0.538126 2:+69947096 MsaT010202.1:CDS
AATATGGAGGATTCCCCACC+TGG 0.538171 2:+69945951 None:intergenic
GCTTGTAATCAGCATTTGCA+GGG 0.540324 2:+69947025 MsaT010202.1:intron
ATCAACTTCCCACTCGGGAG+AGG 0.543167 2:+69947931 MsaT010202.1:CDS
CTTAATATTGGAGGGTCAAG+TGG 0.545128 2:+69947977 MsaT010202.1:CDS
ATCCAATACAAACCCTCCTA+AGG 0.551696 2:+69947305 MsaT010202.1:CDS
CCAACTAGCTCTTCTTCTGT+AGG 0.552564 2:-69945987 None:intergenic
ACCATTAGAGGGGCCAAAGA+CGG 0.556738 2:+69947835 MsaT010202.1:CDS
TTGCCATTGATATCAATGAC+AGG 0.570032 2:-69946068 None:intergenic
AAACTTATCAACTTCCCACT+CGG 0.573290 2:+69947925 MsaT010202.1:CDS
ATATCAATGGCAAAGAGCCA+TGG 0.579611 2:+69946078 MsaT010202.1:CDS
CAAACAGAACAACATCTTGT+GGG 0.582806 2:+69947124 MsaT010202.1:CDS
CTTCTATCTACACAACCAGC+TGG 0.586767 2:+69946010 MsaT010202.1:CDS
AACTTATCAACTTCCCACTC+GGG 0.587994 2:+69947926 MsaT010202.1:CDS
CTTCCCACTCGGGAGAGGTA+GGG 0.590713 2:+69947936 MsaT010202.1:CDS
TTTGATCGAAGACCATTAGA+GGG 0.593675 2:+69947824 MsaT010202.1:CDS
TCTCCCTACCTCTCCCGAGT+GGG 0.595426 2:-69947939 None:intergenic
ATGCTGCTCTTAATATTGGA+GGG 0.598605 2:+69947969 MsaT010202.1:CDS
CTCTCCCTACCTCTCCCGAG+TGG 0.598952 2:-69947940 None:intergenic
CCAAACAGAACAACATCTTG+TGG 0.599917 2:+69947123 MsaT010202.1:CDS
TAGGAAAAGCTCCATCTGGA+AGG 0.600654 2:+69947232 MsaT010202.1:CDS
AACAAGTGCTCATCAACAAG+TGG 0.605093 2:+69947883 MsaT010202.1:CDS
GTCGTGGAGACACAGAGCAA+TGG 0.605650 2:+69947055 MsaT010202.1:CDS
CAATATTAAGAGCAGCATCA+GGG 0.618904 2:-69947964 None:intergenic
TATCTACACAACCAGCTGGA+AGG 0.633344 2:+69946014 MsaT010202.1:CDS
TTTGCAGGGGAGAGATGTCG+TGG 0.639193 2:+69947039 MsaT010202.1:CDS
ATAGAAACGAAAACCAGGTG+GGG 0.644775 2:-69945964 None:intergenic
GATAGAAACGAAAACCAGGT+GGG 0.647890 2:-69945965 None:intergenic
GTAGGATAGAAACGAAAACC+AGG 0.654759 2:-69945969 None:intergenic
CTTGTAATCAGCATTTGCAG+GGG 0.662090 2:+69947026 MsaT010202.1:intron
AGACAAGAGAGAGAGTTGAG+AGG 0.669671 2:+69947093 MsaT010202.1:CDS
TATTGGAATAAGGAAAACCA+TGG 0.672753 2:+69947200 MsaT010202.1:CDS
TTGATCGAAGACCATTAGAG+GGG 0.685119 2:+69947825 MsaT010202.1:CDS
GGATAGAAACGAAAACCAGG+TGG 0.690089 2:-69945966 None:intergenic
CAAGTGGTAGCAGAGCTCGA+TGG 0.690454 2:+69947899 MsaT010202.1:CDS
GAATGATGTACCAAATAATG+GGG 0.703827 2:+69948009 MsaT010202.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 69945954 69948084 69945954 ID=MsaG010202
Chr2 mRNA 69945954 69948084 69945954 ID=MsaT010202.1;Parent=MsaG010202
Chr2 exon 69945954 69946110 69945954 ID=MsaT010202.1.exon1;Parent=MsaT010202.1
Chr2 CDS 69945954 69946110 69945954 ID=cds.MsaT010202.1;Parent=MsaT010202.1
Chr2 exon 69947037 69947326 69947037 ID=MsaT010202.1.exon2;Parent=MsaT010202.1
Chr2 CDS 69947037 69947326 69947037 ID=cds.MsaT010202.1;Parent=MsaT010202.1
Chr2 exon 69947767 69948084 69947767 ID=MsaT010202.1.exon3;Parent=MsaT010202.1
Chr2 CDS 69947767 69948084 69947767 ID=cds.MsaT010202.1;Parent=MsaT010202.1
Gene Sequence

>MsaT010202.1

ATGGAGGATTCCCCACCTGGTTTTCGTTTCTATCCTACAGAAGAAGAGCTAGTTGGCTTCTATCTACACAACCAGCTGGAAGGACAAAAGCATGAAGACATAAACAAAATCATACCTGTCATTGATATCAATGGCAAAGAGCCATGGAACCTTCCAACATTTGCAGGGGAGAGATGTCGTGGAGACACAGAGCAATGGTTTTTCTTTTCACCAAGACAAGAGAGAGAGTTGAGAGGTGGAAGACCAAACAGAACAACATCTTGTGGGTATTGGAAAGCTACGGGTTCTCCTAGCTACGTTTACTCTTCTAACAACAAAGTTATTGGAATAAGGAAAACCATGGTGTTTTACATAGGAAAAGCTCCATCTGGAAGGAAAACAAAATGGAAGATGCATGAATATAAAGCCATTGAACCATCTGATCCATCCAATACAAACCCTCCTAAGCTGCGACACGAAATCAGCTTGTGTCGCGTTTATGTGATATCGGGAAGCTTTAGTTCATTTGATCGAAGACCATTAGAGGGGCCAAAGACGGAGTTACAACTTGATCATGTTGCTTCAACAAGTGCTCATCAACAAGTGGTAGCAGAGCTCGATGGATCAAACTTATCAACTTCCCACTCGGGAGAGGTAGGGAGAGACCCTGATGCTGCTCTTAATATTGGAGGGTCAAGTGGCACGAATTGGAATGATGTACCAAATAATGGGGTTGATGAACCTGACGAGCCTCTTTGGGAATGGGAACAACTAAATTGGATCTAA
Protein sequence

>MsaT010202.1

MEDSPPGFRFYPTEEELVGFYLHNQLEGQKHEDINKIIPVIDINGKEPWNLPTFAGERCRGDTEQWFFFSPRQERELRGGRPNRTTSCGYWKATGSPSYVYSSNNKVIGIRKTMVFYIGKAPSGRKTKWKMHEYKAIEPSDPSNTNPPKLRHEISLCRVYVISGSFSSFDRRPLEGPKTELQLDHVASTSAHQQVVAELDGSNLSTSHSGEVGRDPDAALNIGGSSGTNWNDVPNNGVDEPDEPLWEWEQLNWI*