AlfalfaGEDB | MsaG010314

M. sativa ssp. caerulea / MsaG010314

KEGG: -
GO: -
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010314	XP_003597042.1	90.769	260	4	2	1	240	1	260	9.49e-167	471

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010314	sp\|Q9FH37\|ILR3_ARATH	52.315	216	86	7	36	240	25	234	2.57e-64	202

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010314	tr\|G7IKM3\|G7IKM3_MEDTR	90.769	260	4	2	1	240	1	260	4.53e-167	471

TFs/TRs:

Gene ID	Type	Classification
MsaG010314	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000219	MsaG010314	0.825317	8.889085e-54	2.255618e-51
MsaG000216	MsaG010314	0.835203	3.505672e-56	1.181422e-53
MsaG000510	MsaG010314	0.825691	7.254694e-54	1.860056e-51
MsaG001283	MsaG010314	0.811097	1.422348e-50	2.494908e-48
MsaG002122	MsaG010314	0.801547	1.433553e-48	2.007206e-46
MsaG002480	MsaG010314	0.814867	2.140606e-51	4.124151e-49
MsaG002731	MsaG010314	0.804386	3.737518e-49	5.586150e-47
MsaG002975	MsaG010314	0.838420	5.346351e-57	1.986435e-54
MsaG003305	MsaG010314	0.815975	1.217033e-51	2.411508e-49
MsaG003435	MsaG010314	0.824141	1.678027e-53	4.123250e-51
MsaG003738	MsaG010314	0.842031	6.157776e-58	2.563322e-55
MsaG003976	MsaG010314	0.826475	4.731788e-54	1.240004e-51
MsaG004186	MsaG010314	0.803333	6.169065e-49	8.998179e-47
MsaG004193	MsaG010314	0.802072	1.119843e-48	1.586802e-46
MsaG004367	MsaG010314	0.806322	1.474644e-49	2.306042e-47
MsaG004357	MsaG010314	0.810590	1.829125e-50	3.168883e-48
MsaG004420	MsaG010314	0.812992	5.520897e-51	1.014780e-48
MsaG004703	MsaG010314	0.824234	1.596077e-53	3.931734e-51
MsaG004782	MsaG010314	0.831428	3.028137e-55	9.131045e-53
MsaG004921	MsaG010314	0.871782	1.075515e-66	1.344387e-63
MsaG005052	MsaG010314	0.823926	1.883552e-53	4.601229e-51
MsaG005282	MsaG010314	0.851292	1.865063e-60	1.056856e-57
MsaG005288	MsaG010314	0.844713	1.194289e-58	5.420820e-56
MsaG005598	MsaG010314	0.842592	4.380758e-58	1.856669e-55
MsaG005664	MsaG010314	0.809042	3.923809e-50	6.547683e-48
MsaG005941	MsaG010314	0.817410	5.822649e-52	1.197006e-49
MsaG005942	MsaG010314	0.810622	1.800422e-50	3.121600e-48
MsaG006491	MsaG010314	0.821625	6.427884e-53	1.475854e-50
MsaG006613	MsaG010314	0.802071	1.120589e-48	1.587799e-46
MsaG006616	MsaG010314	0.834295	5.918802e-56	1.941273e-53
MsaG006640	MsaG010314	0.802665	8.465980e-49	1.216011e-46
MsaG006909	MsaG010314	0.830508	5.079312e-55	1.491407e-52
MsaG007094	MsaG010314	0.808909	4.188024e-50	6.966269e-48
MsaG007496	MsaG010314	0.811083	1.432853e-50	2.512440e-48
MsaG007497	MsaG010314	0.807414	8.689722e-50	1.394372e-47
MsaG007610	MsaG010314	0.804879	2.952515e-49	4.463630e-47
MsaG007663	MsaG010314	0.803022	7.147488e-49	1.035085e-46
MsaG008019	MsaG010314	0.815417	1.617954e-51	3.160864e-49
MsaG008647	MsaG010314	0.894165	7.137183e-75	2.627112e-71
MsaG009004	MsaG010314	0.801057	1.804683e-48	2.498856e-46
MsaG009495	MsaG010314	0.832816	1.379293e-55	4.330536e-53
MsaG009864	MsaG010314	0.800218	2.670007e-48	3.627753e-46
MsaG010028	MsaG010314	0.802005	1.156061e-48	1.635556e-46
MsaG010076	MsaG010314	0.846148	4.900273e-59	2.332321e-56
MsaG010148	MsaG010314	0.800185	2.711673e-48	3.681607e-46
MsaG010302	MsaG010314	0.826640	4.324280e-54	1.138340e-51
MsaG010314	MsaG010597	0.800126	2.786969e-48	3.778807e-46
MsaG010314	MsaG010707	0.805778	1.917090e-49	2.959523e-47
MsaG010314	MsaG010891	0.809633	2.933882e-50	4.966041e-48
MsaG010314	MsaG011043	0.816813	7.919095e-52	1.603075e-49
MsaG010314	MsaG011133	0.819668	1.800978e-52	3.926124e-50
MsaG010314	MsaG011407	0.821811	5.824544e-53	1.343925e-50
MsaG010314	MsaG011389	0.816886	7.628041e-52	1.547082e-49
MsaG010314	MsaG011995	0.807669	7.676794e-50	1.239365e-47
MsaG010314	MsaG012013	0.841127	1.063402e-57	4.301137e-55
MsaG010314	MsaG012385	0.832947	1.280076e-55	4.034548e-53
MsaG010314	MsaG012393	0.810270	2.143276e-50	3.684232e-48
MsaG010314	MsaG012430	0.842193	5.580898e-58	2.335113e-55
MsaG010314	MsaG012660	0.803971	4.555428e-49	6.743482e-47
MsaG010314	MsaG014356	0.801235	1.659850e-48	2.307600e-46
MsaG010314	MsaG015347	0.829838	7.391744e-55	2.129323e-52
MsaG010314	MsaG015690	0.820672	1.063258e-52	2.380296e-50
MsaG010314	MsaG016375	0.839015	3.757800e-57	1.422494e-54
MsaG010314	MsaG017181	0.852805	6.960966e-61	4.159365e-58
MsaG010314	MsaG017261	0.801516	1.454535e-48	2.035149e-46
MsaG010314	MsaG017323	0.801183	1.700881e-48	2.361910e-46
MsaG010314	MsaG017557	0.819333	2.145308e-52	4.636288e-50
MsaG010314	MsaG017569	0.807935	6.743932e-50	1.095793e-47
MsaG010314	MsaG017879	0.801091	1.775591e-48	2.460526e-46
MsaG010314	MsaG018208	0.812864	5.886679e-51	1.078564e-48
MsaG010314	MsaG018260	0.814903	2.102050e-51	4.053481e-49
MsaG010314	MsaG018669	0.803206	6.550619e-49	9.526966e-47
MsaG010314	MsaG019268	0.825994	6.153063e-54	1.590991e-51
MsaG010314	MsaG019269	0.838761	4.369177e-57	1.640804e-54
MsaG010314	MsaG019292	0.806148	1.604110e-49	2.498094e-47
MsaG010314	MsaG019493	0.805593	2.095791e-49	3.221374e-47
MsaG010314	MsaG019616	0.826504	4.659700e-54	1.222048e-51
MsaG010314	MsaG019740	0.808592	4.892542e-50	8.076085e-48
MsaG010314	MsaG019937	0.872978	4.313149e-67	5.676283e-64
MsaG010314	MsaG019939	0.860396	4.183272e-63	3.302718e-60
MsaG010314	MsaG020075	0.805888	1.818304e-49	2.814326e-47
MsaG010314	MsaG020297	0.810776	1.668308e-50	2.903431e-48
MsaG010314	MsaG020529	0.800977	1.872952e-48	2.588757e-46
MsaG010314	MsaG020552	0.805391	2.309277e-49	3.532894e-47
MsaG010314	MsaG020577	0.811969	9.216709e-51	1.651625e-48
MsaG010314	MsaG020667	0.829591	8.481419e-55	2.426091e-52
MsaG010314	MsaG020778	0.834345	5.752209e-56	1.889451e-53
MsaG010314	MsaG021001	0.822232	4.658191e-53	1.086979e-50
MsaG010314	MsaG021418	0.826005	6.114662e-54	1.581554e-51
MsaG010314	MsaG022554	0.827482	2.725617e-54	7.345777e-52
MsaG010314	MsaG022820	0.806197	1.566517e-49	2.442461e-47
MsaG010314	MsaG023671	0.813734	3.799398e-51	7.114570e-49
MsaG010314	MsaG023978	0.847397	2.241007e-59	1.112146e-56
MsaG010314	MsaG024135	0.845981	5.437158e-59	2.573547e-56
MsaG010314	MsaG024136	0.801690	1.340537e-48	1.883065e-46
MsaG010314	MsaG024823	0.814028	3.274725e-51	6.177406e-49
MsaG010314	MsaG025077	0.820064	1.463610e-52	3.224508e-50
MsaG010314	MsaG025864	0.806602	1.287935e-49	2.027472e-47
MsaG010314	MsaG027046	0.802770	8.056769e-49	1.159973e-46
MsaG010314	MsaG027255	0.803905	4.699574e-49	6.946094e-47
MsaG010314	MsaG027322	0.802428	9.466135e-49	1.352323e-46
MsaG010314	MsaG027329	0.819441	2.027957e-52	4.394865e-50
MsaG010314	MsaG027571	0.812409	7.394032e-51	1.339518e-48
MsaG010314	MsaG027832	0.825510	8.005882e-54	2.042357e-51
MsaG010314	MsaG028067	0.869829	4.692963e-66	5.399170e-63
MsaG010314	MsaG028522	0.814905	2.099323e-51	4.048495e-49
MsaG010314	MsaG028625	0.863150	6.066914e-64	5.326334e-61
MsaG010314	MsaG028832	0.813807	3.662295e-51	6.870556e-49
MsaG010314	MsaG028931	0.874057	1.875018e-67	2.587337e-64
MsaG010314	MsaG029743	0.817707	4.994092e-52	1.034490e-49
MsaG010314	MsaG029946	0.811586	1.115238e-50	1.979797e-48
MsaG010314	MsaG029916	0.802059	1.126676e-48	1.595998e-46
MsaG010314	MsaG030225	0.817528	5.477573e-52	1.129470e-49
MsaG010314	MsaG032230	0.811918	9.451735e-51	1.691664e-48
MsaG010314	MsaG032424	0.828438	1.609128e-54	4.454999e-52
MsaG010314	MsaG032732	0.817397	5.861153e-52	1.204514e-49
MsaG010314	MsaG032814	0.841023	1.132120e-57	4.564028e-55
MsaG010314	MsaG033171	0.832812	1.382610e-55	4.340463e-53
MsaG010314	MsaG033751	0.832539	1.614253e-55	5.027588e-53
MsaG010314	MsaG035300	0.824745	1.211623e-53	3.026572e-51
MsaG010314	MsaG035715	0.833254	1.074730e-55	3.418179e-53
MsaG010314	MsaG036511	0.815405	1.628055e-51	3.179613e-49
MsaG010314	MsaG036512	0.803945	4.610324e-49	6.820723e-47
MsaG010314	MsaG037325	0.814613	2.435504e-51	4.662152e-49
MsaG010314	MsaG039743	0.811839	9.834813e-51	1.756761e-48
MsaG010314	MsaG043716	0.815115	1.887413e-51	3.659005e-49
MsaG010314	MsaG044570	0.831955	2.248180e-55	6.884607e-53
MsaG010314	MsaG045332	0.803900	4.711023e-49	6.962200e-47
MsaG010314	MsaG045456	0.821072	8.611744e-53	1.948534e-50
MsaG010314	MsaG045861	0.828864	1.270523e-54	3.559633e-52
MsaG010314	MsaG045868	0.801543	1.436747e-48	2.011461e-46
MsaG010314	MsaG046127	0.801394	1.540747e-48	2.149799e-46
MsaG010314	MsaG046480	0.803286	6.309055e-49	9.192338e-47
MsaG010314	MsaG046718	0.806391	1.426318e-49	2.234103e-47
MsaG010314	MsaG046948	0.801171	1.710034e-48	2.374024e-46
MsaG010314	MsaG003580	0.875161	7.938555e-68	1.149770e-64
MsaG010314	MsaG009514	0.821032	8.793633e-53	1.987656e-50
MsaG010314	MsaG008213	0.800296	2.574718e-48	3.504451e-46
MsaG010314	MsaG007989	0.811223	1.336215e-50	2.351069e-48
MsaG010314	MsaG013383	0.805756	1.937064e-49	2.988887e-47
MsaG010314	MsaG013515	0.836071	2.119944e-56	7.332373e-54
MsaG010314	MsaG012862	0.817681	5.060487e-52	1.047553e-49
MsaG010314	MsaG026791	0.815057	1.943821e-51	3.762908e-49
MsaG010314	MsaG028085	0.842119	5.837406e-58	2.436642e-55
MsaG010314	MsaG027837	0.827365	2.907460e-54	7.810299e-52
MsaG010314	MsaG027659	0.814462	2.628967e-51	5.013581e-49
MsaG010314	MsaG031608	0.804327	3.843863e-49	5.737327e-47
MsaG010314	MsaG033538	0.809108	3.797947e-50	6.347830e-48
MsaG010314	MsaG031458	0.843830	2.056308e-58	9.067308e-56
MsaG010314	MsaG031589	0.834278	5.976138e-56	1.959009e-53
MsaG010314	MsaG033505	0.824893	1.118371e-53	2.805057e-51
MsaG010314	MsaG034266	0.836679	1.487246e-56	5.238991e-54
MsaG010314	MsaG031897	0.842224	5.478045e-58	2.294231e-55
MsaG010314	MsaG036456	0.816386	9.859926e-52	1.974224e-49
MsaG010314	MsaG035260	0.808667	4.715276e-50	7.797947e-48
MsaG010314	MsaG037375	0.863273	5.561675e-64	4.906311e-61
MsaG010314	MsaG037635	0.811086	1.430494e-50	2.508472e-48
MsaG010314	MsaG038165	0.865131	1.473812e-64	1.399769e-61
MsaG010314	MsaG038135	0.828871	1.265617e-54	3.546633e-52
MsaG010314	MsaG037652	0.818444	3.408093e-52	7.195569e-50
MsaG010314	MsaG036790	0.826253	5.343413e-54	1.391573e-51
MsaG010314	MsaG037387	0.815685	1.410978e-51	2.775321e-49
MsaG010314	MsaG037837	0.826008	6.106160e-54	1.579467e-51
MsaG010314	MsaG037829	0.866137	7.123965e-65	7.043675e-62
MsaG010314	MsaG041722	0.808459	5.219561e-50	8.588501e-48
MsaG010314	MsaG043789	0.844894	1.067662e-58	4.875933e-56
MsaG010314	MsaG042308	0.814052	3.235469e-51	6.106983e-49
MsaG010314	MsaG044878	0.810729	1.707199e-50	2.967679e-48
MsaG010314	MsaG042389	0.802658	8.491585e-49	1.219516e-46
MsaG010314	MsaG044593	0.804788	3.082971e-49	4.651051e-47
MsaG010314	MsaG042289	0.817025	7.100587e-52	1.445328e-49
MsaG010314	MsaG045902	0.814507	2.570052e-51	4.906718e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010314	MtrunA17_Chr2g0323031	90.769	260	4	2	1	240	1	260	8.73e-171	471
MsaG010314	MtrunA17_Chr4g0042041	54.812	239	88	7	12	240	9	237	2.59e-77	233
MsaG010314	MtrunA17_Chr2g0319301	53.750	240	82	8	12	240	9	230	3.95e-74	224
MsaG010314	MtrunA17_Chr1g0167821	48.824	170	85	2	73	240	77	246	1.47e-44	149
MsaG010314	MtrunA17_Chr1g0161461	43.478	92	51	1	90	181	82	172	8.33e-18	81.3
MsaG010314	MtrunA17_Chr4g0038511	43.299	97	54	1	88	184	9	104	8.52e-18	80.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010314	AT5G54680.1	52.315	216	86	7	36	240	25	234	2.61e-65	202
MsaG010314	AT1G51070.1	54.404	193	80	5	56	240	34	226	8.40e-64	198
MsaG010314	AT1G51070.2	54.124	194	81	5	55	240	99	292	1.06e-62	198
MsaG010314	AT4G14410.2	50.888	169	71	5	78	240	115	277	7.67e-43	146
MsaG010314	AT4G14410.3	50.888	169	71	5	78	240	115	277	7.67e-43	146
MsaG010314	AT4G14410.1	50.888	169	71	5	78	240	121	283	9.22e-43	146
MsaG010314	AT3G23210.2	44.495	218	104	6	31	240	83	291	2.68e-40	140
MsaG010314	AT3G23210.1	44.495	218	104	6	31	240	112	320	4.08e-40	140
MsaG010314	AT3G19860.2	45.745	94	50	1	88	181	61	153	6.23e-17	79.0
MsaG010314	AT3G19860.1	44.898	98	53	1	84	181	4	100	7.43e-17	78.2
MsaG010314	AT3G19860.3	44.898	98	53	1	84	181	35	131	9.67e-17	78.2
MsaG010314	AT4G36060.2	43.750	96	53	1	86	181	27	121	2.20e-16	76.6
MsaG010314	AT4G36060.4	43.750	96	53	1	86	181	27	121	2.25e-16	76.6
MsaG010314	AT4G36060.3	43.750	96	53	1	86	181	45	139	4.56e-16	75.9
MsaG010314	AT4G36060.1	43.750	96	53	1	86	181	45	139	4.93e-16	75.9

Find 63 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GACATGATTTAAAAGGTTTA+TGG	0.124834	2:-71666225	MsaT010314.1:intron
TCTCAGCTTCATTTCTTAAT+TGG	0.176160	2:+71666120	None:intergenic
TAAGCTAACCTTGTCTGTTT+TGG	0.191189	2:+71666169	None:intergenic
TATTTCTGCTGCTGATTTCA+TGG	0.212247	2:-71667471	MsaT010314.1:CDS
TCCATTTGGCTCTATGATTA+TGG	0.214517	2:-71667509	MsaT010314.1:CDS
CCACTGGTGGTTCCTCCATT+TGG	0.268940	2:-71667523	MsaT010314.1:CDS
CTCAGCTTCATTTCTTAATT+GGG	0.281253	2:+71666121	None:intergenic
TTACAACAATATAATGGATA+TGG	0.295671	2:-71667549	None:intergenic
ATCACGAAGCTCTTTCTTCT+CGG	0.320152	2:+71665387	None:intergenic
CACTTTCTCACGACCTGCCT+TGG	0.343619	2:+71666339	None:intergenic
TATTTCAAAGTCACCTCATA+TGG	0.359098	2:+71667366	None:intergenic
ATGCCTTTCATTGGTTATCC+TGG	0.370469	2:-71665241	MsaT010314.1:CDS
TGCTAACCACTTTAAGCAAC+TGG	0.372348	2:+71665151	None:intergenic
CTGCTGCTCCTGCTTTCACC+TGG	0.384655	2:-71667436	MsaT010314.1:CDS
TTATATTAGCAGCATGGAAA+TGG	0.384979	2:-71666759	MsaT010314.1:intron
CACAAGCTGATGCCTTTCAT+TGG	0.397178	2:-71665250	MsaT010314.1:CDS
AACTGCCACATTGAGATTCC+AGG	0.422338	2:+71665223	None:intergenic
AAGATATATTACCGCTTTGA+AGG	0.433191	2:+71666701	None:intergenic
CTCACTGGATTCAACAGTAC+TGG	0.435458	2:-71666732	MsaT010314.1:CDS
TCCTTTAGCAGCCATGGCAT+TGG	0.447269	2:+71665285	None:intergenic
ACCCTCCTTCCTCCCATATG+AGG	0.459345	2:-71667379	MsaT010314.1:intron
GAAGCTAGACAAAGAAAAGT+TGG	0.461043	2:-71665350	MsaT010314.1:CDS
AAGCAACTGGAGGTCGAAGC+AGG	0.492222	2:+71665164	None:intergenic
TCCAATGCCATGGCTGCTAA+AGG	0.493863	2:-71665286	MsaT010314.1:CDS
TGAGGCATCCAGGTGAAAGC+AGG	0.497970	2:+71667428	None:intergenic
GAAGGGATAAATTGAATGAC+AGG	0.502758	2:-71666315	MsaT010314.1:intron
AGTTTGTCCTTTAGCAGCCA+TGG	0.506775	2:+71665279	None:intergenic
AGACTGAGGCTGAGGCATCC+AGG	0.526908	2:+71667418	None:intergenic
CATTGGAGAGGAAGTTAGAC+TGG	0.527913	2:+71665302	None:intergenic
GCCATAATCATAGAGCCAAA+TGG	0.530360	2:+71667508	None:intergenic
CATGGAAATGGAATACTCAC+TGG	0.536132	2:-71666747	MsaT010314.1:CDS
GATTCAACAGTACTGGAAAA+CGG	0.545991	2:-71666725	MsaT010314.1:CDS
AGATATATTACCGCTTTGAA+GGG	0.546831	2:+71666702	None:intergenic
ATTTCAAAGTCACCTCATAT+GGG	0.549756	2:+71667367	None:intergenic
ACCTCATATGGGAGGAAGGA+GGG	0.560123	2:+71667378	None:intergenic
CGCTACAGTTGATACATCAC+AGG	0.567747	2:-71665191	MsaT010314.1:CDS
TGAGTTTGAGACTGAGGCTG+AGG	0.571581	2:+71667410	None:intergenic
TATGCATCTAGCTCCAAGGC+AGG	0.594326	2:-71666352	MsaT010314.1:CDS
CAATGAAAGGCATCAGCTTG+TGG	0.597079	2:+71665251	None:intergenic
AAGCTGAGAGGCTCAACGAA+AGG	0.598466	2:-71666106	MsaT010314.1:CDS
AGTCACCTCATATGGGAGGA+AGG	0.599006	2:+71667374	None:intergenic
GGTTAGCTTATTAAATGATG+CGG	0.600148	2:-71666156	MsaT010314.1:CDS
ATTCCAGGATAACCAATGAA+AGG	0.600579	2:+71665238	None:intergenic
ATTAAATGATGCGGTTCGAG+TGG	0.605944	2:-71666147	MsaT010314.1:CDS
CCAAATGGAGGAACCACCAG+TGG	0.607270	2:+71667523	None:intergenic
TAACTTCCTCTCCAATGCCA+TGG	0.610860	2:-71665296	MsaT010314.1:CDS
ATGGATATGGATTCCACTGG+TGG	0.610998	2:-71667536	MsaT010314.1:CDS
ATCATATGCATCTAGCTCCA+AGG	0.614949	2:-71666356	MsaT010314.1:CDS
TAGCAGCCATGGCATTGGAG+AGG	0.631338	2:+71665290	None:intergenic
TGTGATGTATCAACTGTAGC+GGG	0.634621	2:+71665193	None:intergenic
AGGTCGTGAGAAAGTGCGAA+GGG	0.647351	2:-71666332	MsaT010314.1:CDS
ATGATATGAGTTTGAGACTG+AGG	0.651321	2:+71667404	None:intergenic
CACCTCATATGGGAGGAAGG+AGG	0.652615	2:+71667377	None:intergenic
CAGGTCGTGAGAAAGTGCGA+AGG	0.654075	2:-71666333	MsaT010314.1:CDS
TCAAAGTCACCTCATATGGG+AGG	0.655796	2:+71667370	None:intergenic
ATAATGGATATGGATTCCAC+TGG	0.660012	2:-71667539	MsaT010314.1:CDS
TAACCACTTTAAGCAACTGG+AGG	0.675285	2:+71665154	None:intergenic
ATAATCATAGAGCCAAATGG+AGG	0.683773	2:+71667511	None:intergenic
TACGCTGCCCAAAACAGACA+AGG	0.685974	2:-71666177	MsaT010314.1:CDS
CTGTGATGTATCAACTGTAG+CGG	0.693038	2:+71665192	None:intergenic
TGGAAAACGGCCCTTCAAAG+CGG	0.713168	2:-71666712	MsaT010314.1:intron
AATTAAGAAATGAAGCTGAG+AGG	0.714845	2:-71666118	MsaT010314.1:CDS
GTTATCCTGGAATCTCAATG+TGG	0.748590	2:-71665228	MsaT010314.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	71665162	71667558	71665162	ID=MsaG010314
Chr2	mRNA	71665162	71667558	71665162	ID=MsaT010314.1;Parent=MsaG010314
Chr2	exon	71665162	71665410	71665162	ID=MsaT010314.1.exon5;Parent=MsaT010314.1
Chr2	CDS	71665162	71665410	71665162	ID=cds.MsaT010314.1;Parent=MsaT010314.1
Chr2	exon	71666070	71666232	71666070	ID=MsaT010314.1.exon4;Parent=MsaT010314.1
Chr2	CDS	71666070	71666232	71666070	ID=cds.MsaT010314.1;Parent=MsaT010314.1
Chr2	exon	71666316	71666390	71666316	ID=MsaT010314.1.exon3;Parent=MsaT010314.1
Chr2	CDS	71666316	71666390	71666316	ID=cds.MsaT010314.1;Parent=MsaT010314.1
Chr2	exon	71666713	71666769	71666713	ID=MsaT010314.1.exon2;Parent=MsaT010314.1
Chr2	CDS	71666713	71666769	71666713	ID=cds.MsaT010314.1;Parent=MsaT010314.1
Chr2	exon	71667380	71667558	71667380	ID=MsaT010314.1.exon1;Parent=MsaT010314.1
Chr2	CDS	71667380	71667558	71667380	ID=cds.MsaT010314.1;Parent=MsaT010314.1

Gene Sequence

>MsaT010314.1

ATGGATATGGATTCCACTGGTGGTTCCTCCATTTGGCTCTATGATTATGGCTATGATGATATATCTATTTCTGCTGCTGATTTCATGGCTTCTGACTCTTCTGCTGCTCCTGCTTTCACCTGGATGCCTCAGCCTCAGTCTCAAACTCATATCATCAACCCTCCTTCCTCCCATATGAGCATGGAAATGGAATACTCACTGGATTCAACAGTACTGGAAAACGGCCCTTCAAAGCGGTTAAGGACAGAATCATATGCATCTAGCTCCAAGGCAGGTCGTGAGAAAGTGCGAAGGGATAAATTGAATGACAGGTTTATGGAATTGAGTTCTGTCTTAGAGCCTGATACGCTGCCCAAAACAGACAAGGTTAGCTTATTAAATGATGCGGTTCGAGTGGTGACCCAATTAAGAAATGAAGCTGAGAGGCTCAACGAAAGGAATGATGAATTGCGCGAAAAAGTTAAAGAACTTAAGGCCGAGAAGAAAGAGCTTCGTGATGAAAAAAATAAGCTGAAGCTAGACAAAGAAAAGTTGGAACAGCAAGTCAAATTAGCAAGTGTCCAGTCTAACTTCCTCTCCAATGCCATGGCTGCTAAAGGACAAACTGCTAACCACAAGCTGATGCCTTTCATTGGTTATCCTGGAATCTCAATGTGGCAGTTTATGTCACCCGCTACAGTTGATACATCACAGGATCACCTGCTTCGACCTCCAGTTGCTTAA

Protein sequence

>MsaT010314.1

MDMDSTGGSSIWLYDYGYDDISISAADFMASDSSAAPAFTWMPQPQSQTHIINPPSSHMSMEMEYSLDSTVLENGPSKRLRTESYASSSKAGREKVRRDKLNDRFMELSSVLEPDTLPKTDKVSLLNDAVRVVTQLRNEAERLNERNDELREKVKELKAEKKELRDEKNKLKLDKEKLEQQVKLASVQSNFLSNAMAAKGQTANHKLMPFIGYPGISMWQFMSPATVDTSQDHLLRPPVA*