Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010321 | XP_003597052.1 | 99.346 | 459 | 2 | 1 | 1 | 459 | 1 | 458 | 0.0 | 940 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010321 | sp|Q9SN22|SCL32_ARATH | 43.891 | 442 | 205 | 11 | 13 | 445 | 2 | 409 | 7.33e-117 | 351 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010321 | tr|G7IRJ4|G7IRJ4_MEDTR | 99.346 | 459 | 2 | 1 | 1 | 459 | 1 | 458 | 0.0 | 940 |
Gene ID | Type | Classification |
---|---|---|
MsaG010321 | TF | GRAS |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010321 | MtrunA17_Chr2g0323111 | 99.476 | 191 | 1 | 0 | 269 | 459 | 131 | 321 | 6.06e-138 | 399 |
MsaG010321 | MtrunA17_Chr2g0323111 | 98.473 | 131 | 1 | 1 | 1 | 131 | 1 | 130 | 6.64e-85 | 263 |
MsaG010321 | MtrunA17_Chr5g0401421 | 43.448 | 435 | 198 | 8 | 46 | 446 | 28 | 448 | 4.40e-120 | 358 |
MsaG010321 | MtrunA17_Chr4g0053901 | 41.772 | 474 | 219 | 9 | 13 | 446 | 14 | 470 | 2.46e-119 | 357 |
MsaG010321 | MtrunA17_Chr5g0401131 | 31.618 | 408 | 250 | 7 | 45 | 445 | 106 | 491 | 3.13e-58 | 199 |
MsaG010321 | MtrunA17_Chr2g0329591 | 28.404 | 426 | 249 | 9 | 41 | 445 | 62 | 452 | 3.45e-48 | 171 |
MsaG010321 | MtrunA17_Chr1g0159461 | 29.798 | 396 | 248 | 7 | 51 | 443 | 223 | 591 | 1.89e-47 | 172 |
MsaG010321 | MtrunA17_Chr5g0445331 | 25.342 | 438 | 297 | 7 | 11 | 443 | 119 | 531 | 2.48e-44 | 162 |
MsaG010321 | MtrunA17_Chr7g0224271 | 28.261 | 414 | 245 | 10 | 47 | 443 | 294 | 672 | 4.19e-42 | 158 |
MsaG010321 | MtrunA17_Chr5g0447691 | 27.295 | 403 | 251 | 8 | 50 | 443 | 174 | 543 | 7.54e-42 | 156 |
MsaG010321 | MtrunA17_Chr3g0125811 | 27.047 | 403 | 250 | 8 | 51 | 443 | 201 | 569 | 6.53e-41 | 154 |
MsaG010321 | MtrunA17_Chr2g0328391 | 26.521 | 411 | 261 | 9 | 46 | 446 | 292 | 671 | 3.18e-40 | 153 |
MsaG010321 | MtrunA17_Chr2g0319091 | 25.622 | 402 | 259 | 7 | 50 | 443 | 209 | 578 | 3.27e-39 | 149 |
MsaG010321 | MtrunA17_Chr4g0031721 | 27.340 | 406 | 254 | 9 | 50 | 446 | 313 | 686 | 4.55e-39 | 150 |
MsaG010321 | MtrunA17_Chr3g0101141 | 25.708 | 424 | 267 | 10 | 32 | 443 | 154 | 541 | 4.49e-38 | 145 |
MsaG010321 | MtrunA17_Chr7g0238891 | 28.293 | 410 | 245 | 10 | 50 | 446 | 369 | 742 | 5.10e-38 | 147 |
MsaG010321 | MtrunA17_Chr4g0031711 | 26.650 | 409 | 257 | 9 | 50 | 446 | 358 | 735 | 7.32e-38 | 146 |
MsaG010321 | MtrunA17_Chr4g0031741 | 28.288 | 403 | 246 | 9 | 53 | 446 | 284 | 652 | 1.68e-37 | 145 |
MsaG010321 | MtrunA17_Chr4g0031701 | 26.290 | 407 | 261 | 9 | 50 | 446 | 251 | 628 | 1.91e-36 | 142 |
MsaG010321 | MtrunA17_Chr2g0328341 | 27.517 | 447 | 253 | 13 | 26 | 446 | 239 | 640 | 4.55e-36 | 140 |
MsaG010321 | MtrunA17_Chr4g0057291 | 25.616 | 406 | 261 | 10 | 53 | 448 | 292 | 666 | 1.19e-35 | 140 |
MsaG010321 | MtrunA17_Chr2g0328431 | 26.368 | 402 | 254 | 9 | 53 | 446 | 289 | 656 | 1.29e-35 | 139 |
MsaG010321 | MtrunA17_Chr4g0031731 | 26.406 | 409 | 258 | 11 | 50 | 446 | 251 | 628 | 8.72e-35 | 137 |
MsaG010321 | MtrunA17_Chr4g0076091 | 26.667 | 405 | 254 | 11 | 50 | 444 | 172 | 543 | 2.54e-34 | 135 |
MsaG010321 | MtrunA17_Chr5g0396491 | 24.943 | 441 | 274 | 9 | 47 | 443 | 50 | 477 | 4.15e-34 | 133 |
MsaG010321 | MtrunA17_Chr3g0085681 | 25.708 | 424 | 267 | 10 | 54 | 443 | 26 | 435 | 9.63e-34 | 131 |
MsaG010321 | MtrunA17_Chr3g0110971 | 26.253 | 419 | 242 | 11 | 47 | 443 | 213 | 586 | 2.89e-33 | 132 |
MsaG010321 | MtrunA17_Chr8g0376381 | 26.263 | 396 | 242 | 13 | 54 | 443 | 170 | 521 | 6.90e-33 | 130 |
MsaG010321 | MtrunA17_Chr2g0328411 | 25.564 | 399 | 257 | 9 | 53 | 444 | 289 | 654 | 1.13e-32 | 131 |
MsaG010321 | MtrunA17_Chr2g0290241 | 26.303 | 403 | 256 | 9 | 50 | 443 | 54 | 424 | 4.98e-32 | 126 |
MsaG010321 | MtrunA17_Chr2g0328401 | 28.883 | 367 | 220 | 10 | 53 | 412 | 290 | 622 | 1.16e-31 | 128 |
MsaG010321 | MtrunA17_Chr2g0328381 | 26.341 | 410 | 251 | 9 | 50 | 446 | 272 | 643 | 1.56e-31 | 127 |
MsaG010321 | MtrunA17_Chr4g0057891 | 25.829 | 422 | 260 | 11 | 41 | 443 | 132 | 519 | 4.36e-31 | 125 |
MsaG010321 | MtrunA17_Chr8g0344101 | 25.728 | 412 | 264 | 11 | 46 | 443 | 216 | 599 | 3.35e-30 | 123 |
MsaG010321 | MtrunA17_Chr4g0038851 | 23.624 | 436 | 285 | 9 | 47 | 443 | 42 | 468 | 6.40e-30 | 121 |
MsaG010321 | MtrunA17_Chr8g0357601 | 26.116 | 448 | 282 | 11 | 8 | 443 | 141 | 551 | 6.58e-30 | 122 |
MsaG010321 | MtrunA17_Chr4g0038761 | 24.250 | 400 | 264 | 9 | 56 | 452 | 87 | 450 | 1.21e-29 | 120 |
MsaG010321 | MtrunA17_Chr1g0183641 | 24.876 | 402 | 257 | 10 | 47 | 444 | 117 | 477 | 2.95e-28 | 117 |
MsaG010321 | MtrunA17_Chr3g0085361 | 26.957 | 345 | 206 | 9 | 132 | 443 | 18 | 349 | 3.50e-27 | 111 |
MsaG010321 | MtrunA17_Chr4g0039661 | 27.068 | 399 | 248 | 13 | 52 | 443 | 192 | 554 | 6.88e-26 | 110 |
MsaG010321 | MtrunA17_Chr2g0328361 | 25.245 | 408 | 233 | 10 | 50 | 446 | 271 | 617 | 1.10e-25 | 110 |
MsaG010321 | MtrunA17_Chr2g0306641 | 23.929 | 397 | 261 | 12 | 53 | 443 | 125 | 486 | 1.63e-25 | 108 |
MsaG010321 | MtrunA17_Chr7g0245601 | 21.939 | 392 | 265 | 10 | 56 | 445 | 441 | 793 | 1.07e-22 | 101 |
MsaG010321 | MtrunA17_Chr3g0114841 | 28.571 | 322 | 188 | 11 | 134 | 446 | 214 | 502 | 1.70e-22 | 100 |
MsaG010321 | MtrunA17_Chr8g0383981 | 23.892 | 406 | 253 | 14 | 53 | 447 | 139 | 499 | 1.87e-19 | 90.9 |
MsaG010321 | MtrunA17_Chr1g0200401 | 21.718 | 419 | 260 | 12 | 53 | 443 | 80 | 458 | 6.82e-18 | 85.9 |
MsaG010321 | MtrunA17_Chr2g0328371 | 26.394 | 269 | 167 | 6 | 132 | 397 | 8 | 248 | 6.87e-17 | 80.1 |
MsaG010321 | MtrunA17_Chr7g0236851 | 21.393 | 402 | 264 | 11 | 54 | 443 | 295 | 656 | 1.25e-15 | 79.3 |
MsaG010321 | MtrunA17_Chr4g0012071 | 23.573 | 403 | 246 | 14 | 54 | 443 | 197 | 550 | 1.96e-15 | 78.6 |
MsaG010321 | MtrunA17_Chr5g0424131 | 24.818 | 411 | 270 | 13 | 47 | 444 | 115 | 499 | 9.17e-15 | 76.3 |
MsaG010321 | MtrunA17_Chr7g0230771 | 23.741 | 417 | 229 | 15 | 54 | 443 | 376 | 730 | 1.02e-14 | 76.6 |
MsaG010321 | MtrunA17_Chr7g0230731 | 23.671 | 414 | 233 | 13 | 54 | 443 | 373 | 727 | 5.61e-14 | 74.3 |
MsaG010321 | MtrunA17_Chr4g0054071 | 32.143 | 112 | 65 | 2 | 51 | 156 | 131 | 237 | 7.24e-13 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010321 | AT3G49950.1 | 43.891 | 442 | 205 | 11 | 13 | 445 | 2 | 409 | 7.45e-118 | 351 |
MsaG010321 | AT4G37650.1 | 29.078 | 423 | 252 | 12 | 44 | 446 | 137 | 531 | 1.06e-51 | 183 |
MsaG010321 | AT2G04890.1 | 27.960 | 397 | 243 | 9 | 53 | 443 | 53 | 412 | 5.11e-44 | 159 |
MsaG010321 | AT5G48150.1 | 28.535 | 396 | 248 | 8 | 54 | 443 | 123 | 489 | 1.36e-43 | 160 |
MsaG010321 | AT5G48150.4 | 28.535 | 396 | 248 | 8 | 54 | 443 | 123 | 489 | 1.36e-43 | 160 |
MsaG010321 | AT5G48150.2 | 28.535 | 396 | 248 | 8 | 54 | 443 | 123 | 489 | 1.36e-43 | 160 |
MsaG010321 | AT5G48150.3 | 28.535 | 396 | 248 | 8 | 54 | 443 | 123 | 489 | 1.36e-43 | 160 |
MsaG010321 | AT1G21450.1 | 27.397 | 438 | 276 | 12 | 16 | 443 | 187 | 592 | 2.08e-41 | 155 |
MsaG010321 | AT1G50600.3 | 27.182 | 401 | 254 | 8 | 50 | 443 | 156 | 525 | 3.96e-41 | 154 |
MsaG010321 | AT1G50600.2 | 27.182 | 401 | 254 | 8 | 50 | 443 | 231 | 600 | 8.45e-41 | 154 |
MsaG010321 | AT1G50600.1 | 27.182 | 401 | 254 | 8 | 50 | 443 | 227 | 596 | 1.21e-40 | 154 |
MsaG010321 | AT1G50420.1 | 26.994 | 489 | 297 | 12 | 3 | 443 | 2 | 478 | 3.89e-39 | 147 |
MsaG010321 | AT5G67411.1 | 39.631 | 217 | 106 | 8 | 171 | 381 | 1 | 198 | 2.37e-38 | 138 |
MsaG010321 | AT1G07520.2 | 27.941 | 408 | 250 | 10 | 53 | 446 | 154 | 531 | 5.22e-36 | 140 |
MsaG010321 | AT1G07520.4 | 27.941 | 408 | 250 | 10 | 53 | 446 | 154 | 531 | 5.22e-36 | 140 |
MsaG010321 | AT1G07520.3 | 27.941 | 408 | 250 | 10 | 53 | 446 | 319 | 696 | 1.30e-35 | 140 |
MsaG010321 | AT1G07520.1 | 27.941 | 408 | 250 | 10 | 53 | 446 | 318 | 695 | 1.43e-35 | 140 |
MsaG010321 | AT2G29065.1 | 27.901 | 405 | 255 | 9 | 53 | 446 | 252 | 630 | 1.90e-35 | 139 |
MsaG010321 | AT3G03450.1 | 26.119 | 402 | 258 | 10 | 47 | 443 | 177 | 544 | 3.49e-35 | 137 |
MsaG010321 | AT4G17230.1 | 26.933 | 401 | 259 | 9 | 50 | 445 | 155 | 526 | 6.66e-35 | 137 |
MsaG010321 | AT4G17230.2 | 26.933 | 401 | 259 | 9 | 50 | 445 | 155 | 526 | 6.66e-35 | 137 |
MsaG010321 | AT1G07530.1 | 25.735 | 408 | 263 | 10 | 48 | 446 | 391 | 767 | 6.73e-35 | 138 |
MsaG010321 | AT2G37650.1 | 26.290 | 407 | 253 | 11 | 50 | 445 | 344 | 714 | 2.68e-34 | 136 |
MsaG010321 | AT2G37650.2 | 26.290 | 407 | 253 | 11 | 50 | 445 | 332 | 702 | 2.78e-34 | 136 |
MsaG010321 | AT5G17490.1 | 26.585 | 410 | 253 | 10 | 47 | 449 | 154 | 522 | 6.27e-34 | 134 |
MsaG010321 | AT2G01570.1 | 25.743 | 404 | 254 | 8 | 46 | 443 | 217 | 580 | 1.19e-32 | 130 |
MsaG010321 | AT2G29060.2 | 25.792 | 442 | 279 | 12 | 18 | 445 | 250 | 656 | 3.27e-32 | 130 |
MsaG010321 | AT2G29060.1 | 25.792 | 442 | 279 | 12 | 18 | 445 | 287 | 693 | 3.81e-32 | 130 |
MsaG010321 | AT1G14920.1 | 26.119 | 402 | 255 | 11 | 46 | 443 | 165 | 528 | 4.14e-32 | 129 |
MsaG010321 | AT1G63100.2 | 27.027 | 370 | 232 | 9 | 53 | 417 | 277 | 613 | 2.53e-31 | 127 |
MsaG010321 | AT1G63100.1 | 27.027 | 370 | 232 | 9 | 53 | 417 | 252 | 588 | 2.65e-31 | 127 |
MsaG010321 | AT1G66350.1 | 24.750 | 400 | 255 | 7 | 47 | 443 | 149 | 505 | 1.62e-30 | 124 |
MsaG010321 | AT5G59450.1 | 25.672 | 409 | 262 | 12 | 50 | 447 | 224 | 601 | 1.37e-28 | 119 |
MsaG010321 | AT3G46600.2 | 25.616 | 406 | 262 | 9 | 50 | 447 | 1 | 374 | 2.67e-28 | 115 |
MsaG010321 | AT5G41920.1 | 24.631 | 406 | 259 | 11 | 46 | 443 | 33 | 399 | 2.80e-28 | 116 |
MsaG010321 | AT3G46600.3 | 25.616 | 406 | 262 | 9 | 50 | 447 | 177 | 550 | 1.40e-27 | 115 |
MsaG010321 | AT3G46600.1 | 25.616 | 406 | 262 | 9 | 50 | 447 | 209 | 582 | 2.42e-27 | 115 |
MsaG010321 | AT5G66770.1 | 27.596 | 366 | 225 | 12 | 52 | 412 | 219 | 549 | 9.39e-24 | 104 |
MsaG010321 | AT3G54220.1 | 23.704 | 405 | 265 | 11 | 46 | 445 | 286 | 651 | 1.43e-23 | 104 |
MsaG010321 | AT3G13840.1 | 24.638 | 414 | 257 | 11 | 43 | 443 | 138 | 509 | 3.06e-23 | 102 |
MsaG010321 | AT5G52510.1 | 22.359 | 407 | 273 | 8 | 49 | 443 | 264 | 639 | 3.45e-21 | 97.1 |
MsaG010321 | AT1G55580.1 | 24.009 | 429 | 266 | 12 | 50 | 443 | 41 | 444 | 3.84e-19 | 90.1 |
MsaG010321 | AT4G08250.1 | 25.648 | 386 | 246 | 12 | 68 | 444 | 124 | 477 | 1.89e-16 | 82.0 |
MsaG010321 | AT3G50650.1 | 22.642 | 371 | 241 | 10 | 84 | 443 | 206 | 541 | 4.25e-15 | 78.2 |
MsaG010321 | AT4G00150.1 | 24.485 | 437 | 258 | 18 | 18 | 443 | 178 | 553 | 4.10e-13 | 72.0 |
Find 96 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAAATAACGTAACCAATTT+TGG | 0.129129 | 2:-71770488 | None:intergenic |
CCTGAACCAGAAGCACTTAA+AGG | 0.212847 | 2:+71769754 | MsaT010321.1:CDS |
ATCCTAGCATGTTGAATCTT+AGG | 0.231235 | 2:+71770439 | MsaT010321.1:CDS |
TGGTTATAAATTGCCAAAAT+TGG | 0.234975 | 2:+71770475 | MsaT010321.1:CDS |
AAAACAGTTTCCTCACAAAA+TGG | 0.244613 | 2:-71770852 | None:intergenic |
CCTTTAAGTGCTTCTGGTTC+AGG | 0.294156 | 2:-71769754 | None:intergenic |
TAGGCCTATGGTTCCTCCTT+TGG | 0.297810 | 2:+71770248 | MsaT010321.1:CDS |
CAGGAAGAGGAGGAGTGTTT+TGG | 0.299955 | 2:-71769735 | None:intergenic |
CATCAAAGGGTATCCATAAA+TGG | 0.302600 | 2:-71770659 | None:intergenic |
AGACACCCTTTAAGTGCTTC+TGG | 0.308751 | 2:-71769760 | None:intergenic |
CTAAGTGAAGGAGGACCTTC+TGG | 0.319718 | 2:-71770207 | None:intergenic |
GAAACCATGAAGTGAGTCTT+TGG | 0.321815 | 2:-71769918 | None:intergenic |
GTCCTTTGACAACTATCTTT+AGG | 0.332169 | 2:-71770699 | None:intergenic |
CTAACCAAAGACTCACTTCA+TGG | 0.347970 | 2:+71769914 | MsaT010321.1:CDS |
TAACCCTCAAATAGTGCTAT+TGG | 0.350512 | 2:+71770575 | MsaT010321.1:CDS |
TGATTTGAAAATTTCATTGT+TGG | 0.362564 | 2:-71770094 | None:intergenic |
CTTGGGTCCCTAGTGAAATT+CGG | 0.366646 | 2:+71770982 | MsaT010321.1:CDS |
GGGTGTCTTGGAAGCTTAGA+TGG | 0.372435 | 2:+71769775 | MsaT010321.1:CDS |
ATCAACATACCCGGCGAGTT+CGG | 0.379075 | 2:-71770037 | None:intergenic |
CCAATAACATTAAACTCAAA+AGG | 0.380341 | 2:-71770333 | None:intergenic |
AACAACGTTGCTTCACCATT+AGG | 0.392639 | 2:+71769886 | MsaT010321.1:CDS |
TTAATTCCTTGGCATAGGTT+TGG | 0.394976 | 2:+71770060 | MsaT010321.1:CDS |
ACTCCATTGTGCAAGTGCTT+TGG | 0.397900 | 2:+71769819 | MsaT010321.1:CDS |
GAGAATATTATAAGCTTTGA+AGG | 0.397984 | 2:+71770753 | MsaT010321.1:CDS |
TGGTGTGTGTTGAAGAGTGT+TGG | 0.399999 | 2:-71769715 | None:intergenic |
ATGGTGAAGCAACGTTGTTT+AGG | 0.411496 | 2:-71769882 | None:intergenic |
AGGATAGAGAGATTGGAGTC+AGG | 0.412485 | 2:+71770783 | MsaT010321.1:CDS |
TCTTAGGGAAGATGAAGCTT+TGG | 0.413076 | 2:+71770455 | MsaT010321.1:CDS |
TTGGGTCCCTAGTGAAATTC+GGG | 0.414052 | 2:+71770983 | MsaT010321.1:CDS |
GCATCAAAGGATAGAGAGAT+TGG | 0.414417 | 2:+71770776 | MsaT010321.1:CDS |
CATGAAGTAGGTCAACGTTT+AGG | 0.420677 | 2:+71770285 | MsaT010321.1:CDS |
CTTTGGTTAGTGTCACCTAA+TGG | 0.430482 | 2:-71769901 | None:intergenic |
GGTGTGTGTTGAAGAGTGTT+GGG | 0.432610 | 2:-71769714 | None:intergenic |
AATCAATTAAGGGATTCAAA+AGG | 0.434752 | 2:+71770112 | MsaT010321.1:CDS |
CTGCGTGTTTGCGACCGCTT+GGG | 0.440188 | 2:+71770965 | MsaT010321.1:CDS |
ATGGATACCCTTTGATGCAC+TGG | 0.441346 | 2:+71770665 | MsaT010321.1:CDS |
CATTAATCTCTAGAGCTTCA+AGG | 0.442427 | 2:+71769947 | MsaT010321.1:CDS |
GCTGCGTGTTTGCGACCGCT+TGG | 0.447845 | 2:+71770964 | MsaT010321.1:CDS |
AGTGCTTCTGGTTCAGGAAG+AGG | 0.451746 | 2:-71769748 | None:intergenic |
CTGAACCAGAAGCACTTAAA+GGG | 0.452138 | 2:+71769755 | MsaT010321.1:CDS |
TCCTAGCATGTTGAATCTTA+GGG | 0.452667 | 2:+71770440 | MsaT010321.1:CDS |
GGATAGAGAGATTGGAGTCA+GGG | 0.452893 | 2:+71770784 | MsaT010321.1:CDS |
TCAACCAATAGCACTATTTG+AGG | 0.464072 | 2:-71770579 | None:intergenic |
GGTATGTTGATTTAATTCCT+TGG | 0.469050 | 2:+71770049 | MsaT010321.1:CDS |
TTATTTATCTGATGATAGAA+AGG | 0.472508 | 2:+71770503 | MsaT010321.1:CDS |
AAAGTAGGCCATTGCATACA+AGG | 0.474102 | 2:-71770162 | None:intergenic |
ATCAATTAAGGGATTCAAAA+GGG | 0.476229 | 2:+71770113 | MsaT010321.1:CDS |
AAAAGTGTCCAGTGCATCAA+AGG | 0.477866 | 2:-71770673 | None:intergenic |
CCTTAGCTCAACAAGTTATG+TGG | 0.481567 | 2:+71769857 | MsaT010321.1:CDS |
AGTGAAATTCGGGATCATAT+CGG | 0.488833 | 2:+71770993 | MsaT010321.1:CDS |
CCTTTGAAATTCATTGAAGT+AGG | 0.489707 | 2:-71769976 | None:intergenic |
AAAGCATGTTGGTTCTTACA+TGG | 0.498679 | 2:+71770931 | MsaT010321.1:CDS |
GAAGCACTTAAAGGGTGTCT+TGG | 0.503731 | 2:+71769763 | MsaT010321.1:CDS |
CAATAACATTAAACTCAAAA+GGG | 0.504289 | 2:-71770332 | None:intergenic |
TTGATTTAATTCCTTGGCAT+AGG | 0.515662 | 2:+71770055 | MsaT010321.1:CDS |
CCTACTTCAATGAATTTCAA+AGG | 0.532194 | 2:+71769976 | MsaT010321.1:CDS |
CCACATAACTTGTTGAGCTA+AGG | 0.533265 | 2:-71769857 | None:intergenic |
TATTTATCTGATGATAGAAA+GGG | 0.534012 | 2:+71770504 | MsaT010321.1:CDS |
GCCAAAGAATCTATAAAAGT+AGG | 0.539244 | 2:-71770177 | None:intergenic |
CAACCAATAGCACTATTTGA+GGG | 0.543059 | 2:-71770578 | None:intergenic |
GAACCATAGGCCTAAAAGAT+GGG | 0.544386 | 2:-71770239 | None:intergenic |
ATGTTGGTTCTTACATGGAA+AGG | 0.544446 | 2:+71770936 | MsaT010321.1:CDS |
TAAGCTTTGAAGGGCATCAA+AGG | 0.546684 | 2:+71770763 | MsaT010321.1:CDS |
GGAACCATAGGCCTAAAAGA+TGG | 0.547678 | 2:-71770240 | None:intergenic |
ATGTCGGTTACCGAACTCGC+CGG | 0.550372 | 2:+71770027 | MsaT010321.1:CDS |
GATGAACATGCTAGTGGATG+GGG | 0.551613 | 2:+71770894 | MsaT010321.1:CDS |
ATATGATCCCGAATTTCACT+AGG | 0.561630 | 2:-71770990 | None:intergenic |
AGAATATTATAAGCTTTGAA+GGG | 0.562232 | 2:+71770754 | MsaT010321.1:CDS |
AACATATCAATACATGAAGT+AGG | 0.562253 | 2:+71770273 | MsaT010321.1:CDS |
AGCTTTCATGTGAACGTGCA+TGG | 0.563642 | 2:-71769656 | None:intergenic |
TGCCTAAAGATAGTTGTCAA+AGG | 0.566343 | 2:+71770697 | MsaT010321.1:CDS |
GTAACTACACAATTCAAAGA+AGG | 0.569120 | 2:+71770001 | MsaT010321.1:CDS |
TGTCGGTTACCGAACTCGCC+GGG | 0.570400 | 2:+71770028 | MsaT010321.1:CDS |
AATAGTGCTATTGGTTGATG+AGG | 0.571491 | 2:+71770584 | MsaT010321.1:CDS |
GCATAACACCTTGTATGCAA+TGG | 0.571925 | 2:+71770154 | MsaT010321.1:CDS |
AAAGTGTCCAGTGCATCAAA+GGG | 0.575835 | 2:-71770672 | None:intergenic |
TCCCTAAGATTCAACATGCT+AGG | 0.588496 | 2:-71770441 | None:intergenic |
TGTATTGATATGTTAACCAA+AGG | 0.588615 | 2:-71770264 | None:intergenic |
TTAACCAAAGGAGGAACCAT+AGG | 0.589947 | 2:-71770252 | None:intergenic |
ATTGATATGTTAACCAAAGG+AGG | 0.601377 | 2:-71770261 | None:intergenic |
TTGATGAACATGCTAGTGGA+TGG | 0.601862 | 2:+71770892 | MsaT010321.1:CDS |
TGATGAACATGCTAGTGGAT+GGG | 0.604800 | 2:+71770893 | MsaT010321.1:CDS |
TCTTTGGCTAAATTACCAGA+AGG | 0.605851 | 2:+71770192 | MsaT010321.1:CDS |
TTGCTTGATGAACATGCTAG+TGG | 0.606672 | 2:+71770888 | MsaT010321.1:CDS |
GCTTCTGGTTCAGGAAGAGG+AGG | 0.607512 | 2:-71769745 | None:intergenic |
CTTAGCTCAACAAGTTATGT+GGG | 0.611843 | 2:+71769858 | MsaT010321.1:CDS |
AGGAATTAAATCAACATACC+CGG | 0.613372 | 2:-71770046 | None:intergenic |
GAAAAGAGAAGAAAGCATGT+TGG | 0.614602 | 2:+71770920 | MsaT010321.1:CDS |
ACAGAGTTTGAATCTGACAT+AGG | 0.622989 | 2:+71770720 | MsaT010321.1:CDS |
AATTCAAAGAAGGTTGATGT+CGG | 0.634129 | 2:+71770011 | MsaT010321.1:CDS |
GGGACTGTGATTCTAAGTGA+AGG | 0.639863 | 2:-71770219 | None:intergenic |
TATGATCCCGAATTTCACTA+GGG | 0.650286 | 2:-71770989 | None:intergenic |
ACTGTGATTCTAAGTGAAGG+AGG | 0.660820 | 2:-71770216 | None:intergenic |
AATTCGGGATCATATCGGCA+TGG | 0.665545 | 2:+71770998 | MsaT010321.1:CDS |
TTTCCAAAGCACTTGCACAA+TGG | 0.673097 | 2:-71769822 | None:intergenic |
AATTTCACTAGGGACCCAAG+CGG | 0.769651 | 2:-71770979 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 71769658 | 71771037 | 71769658 | ID=MsaG010321 |
Chr2 | mRNA | 71769658 | 71771037 | 71769658 | ID=MsaT010321.1;Parent=MsaG010321 |
Chr2 | exon | 71769658 | 71771037 | 71769658 | ID=MsaT010321.1.exon1;Parent=MsaT010321.1 |
Chr2 | CDS | 71769658 | 71771037 | 71769658 | ID=cds.MsaT010321.1;Parent=MsaT010321.1 |
Gene Sequence |
Protein sequence |