AlfalfaGEDB | MsaG010492

M. sativa ssp. caerulea / MsaG010492

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010492	RHN76102.1	90.698	86	8	0	5	90	264	349	2.98e-43	161

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010492	sp\|Q9XE58\|SCL14_ARATH	52.381	84	38	1	8	89	362	445	1.31e-21	92.8

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010492	tr\|A0A396JFP7\|A0A396JFP7_MEDTR	90.698	86	8	0	5	90	264	349	1.42e-43	161

TFs/TRs:

Gene ID	Type	Classification
MsaG010492	TF	GRAS

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000314	MsaG010492	0.800149	2.757455e-48	3.740774e-46
MsaG001331	MsaG010492	0.805789	1.906676e-49	2.944256e-47
MsaG003630	MsaG010492	0.807167	9.795118e-50	1.562569e-47
MsaG004393	MsaG010492	0.853251	5.195583e-61	3.153867e-58
MsaG005310	MsaG010492	0.802137	1.086226e-48	1.541395e-46
MsaG005922	MsaG010492	0.810039	2.402015e-50	4.105837e-48
MsaG006307	MsaG010492	0.822415	4.226426e-53	9.911167e-51
MsaG010492	MsaG011186	0.832512	1.639939e-55	5.103637e-53
MsaG010492	MsaG012572	0.848461	1.144237e-59	5.884115e-57
MsaG010492	MsaG019820	0.829266	1.016467e-54	2.880312e-52
MsaG010492	MsaG020657	0.805046	2.725409e-49	4.136382e-47
MsaG010492	MsaG020934	0.811844	9.806992e-51	1.752024e-48
MsaG010492	MsaG021323	0.818304	3.665282e-52	7.710402e-50
MsaG010492	MsaG022096	0.807140	9.926557e-50	1.582484e-47
MsaG010492	MsaG024666	0.820143	1.403884e-52	3.099528e-50
MsaG010492	MsaG028949	0.814015	3.297408e-51	6.218071e-49
MsaG010492	MsaG031667	0.800946	1.900457e-48	2.624973e-46
MsaG010492	MsaG031926	0.808457	5.224409e-50	8.596104e-48
MsaG010492	MsaG031997	0.808602	4.867263e-50	8.036271e-48
MsaG010492	MsaG036690	0.825133	9.821751e-54	2.479685e-51
MsaG010492	MsaG042354	0.800769	2.064350e-48	2.840110e-46
MsaG010492	MsaG043285	0.800542	2.296196e-48	3.142801e-46
MsaG010492	MsaG046240	0.803210	6.538605e-49	9.510406e-47
MsaG010492	MsaG046964	0.829589	8.493595e-55	2.429390e-52

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010492	MtrunA17_Chr2g0328391	90.698	86	8	0	5	90	264	349	2.74e-47	161
MsaG010492	MtrunA17_Chr4g0031711	63.889	72	26	0	19	90	340	411	2.64e-28	108
MsaG010492	MtrunA17_Chr4g0031721	60.494	81	32	0	9	89	285	365	4.55e-26	102
MsaG010492	MtrunA17_Chr4g0031701	62.857	70	26	0	21	90	235	304	4.37e-25	99.4
MsaG010492	MtrunA17_Chr7g0238891	43.333	120	51	1	22	124	354	473	1.08e-24	98.6
MsaG010492	MtrunA17_Chr4g0031731	61.429	70	27	0	21	90	235	304	1.81e-24	97.8
MsaG010492	MtrunA17_Chr2g0328381	58.462	65	27	0	25	89	260	324	1.58e-21	89.4
MsaG010492	MtrunA17_Chr2g0328361	57.812	64	27	0	26	89	260	323	8.36e-21	87.4
MsaG010492	MtrunA17_Chr2g0328341	60.317	63	22	1	30	89	259	321	7.80e-20	84.7
MsaG010492	MtrunA17_Chr2g0328401	56.338	71	29	1	20	88	268	338	2.59e-18	80.1
MsaG010492	MtrunA17_Chr4g0031741	63.636	55	20	0	35	89	279	333	2.04e-17	77.8
MsaG010492	MtrunA17_Chr2g0328411	50.649	77	31	2	20	89	262	338	3.74e-16	73.9
MsaG010492	MtrunA17_Chr2g0328431	49.351	77	32	1	20	89	262	338	4.78e-16	73.6
MsaG010492	MtrunA17_Chr3g0140681	82.353	34	6	0	107	140	250	283	7.26e-12	61.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010492	AT1G07530.1	52.381	84	38	1	8	89	362	445	1.34e-22	92.8
MsaG010492	AT1G07520.1	61.765	68	23	1	22	89	303	367	1.40e-20	87.0
MsaG010492	AT1G07520.3	61.765	68	23	1	22	89	304	368	1.40e-20	87.0
MsaG010492	AT1G07520.2	61.765	68	23	1	22	89	139	203	1.78e-20	86.7
MsaG010492	AT1G07520.4	61.765	68	23	1	22	89	139	203	1.78e-20	86.7
MsaG010492	AT2G37650.1	52.703	74	35	0	28	101	335	408	1.57e-19	84.0
MsaG010492	AT2G37650.2	52.703	74	35	0	28	101	323	396	1.90e-19	84.0
MsaG010492	AT2G29060.1	48.718	78	40	0	20	97	301	378	3.99e-19	82.8
MsaG010492	AT2G29060.2	48.718	78	40	0	20	97	264	341	4.71e-19	82.8
MsaG010492	AT2G29065.1	62.500	56	21	0	34	89	246	301	3.08e-15	71.6
MsaG010492	AT5G59450.1	47.368	76	38	1	14	89	203	276	8.37e-15	70.5
MsaG010492	AT3G46600.1	47.826	69	36	0	21	89	193	261	3.15e-14	68.9
MsaG010492	AT3G46600.3	47.826	69	36	0	21	89	161	229	4.34e-14	68.6
MsaG010492	AT3G46600.2	52.830	53	25	0	37	89	1	53	5.47e-11	59.3

Find 35 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTACATGAATTTAATATCTT+TGG	0.208781	2:-73956893	None:intergenic
AGTGACTATGACAATGTAAT+TGG	0.287106	2:+73955554	MsaT010492.1:CDS
TTCTCTATAGGTCTGCTTTA+CGG	0.327658	2:+73957007	MsaT010492.1:intron
AGGAAGCATTCTTGTCCTTC+AGG	0.331779	2:+73954991	MsaT010492.1:CDS
TTTCTGCTTACTTTCAGATA+TGG	0.359746	2:-73955584	None:intergenic
TGTGGATTTGAGGACCCTTT+TGG	0.385294	2:+73954903	MsaT010492.1:CDS
CAGGTTCTACATGGTGCATC+TGG	0.398474	2:+73954717	None:intergenic
ATGAATTGTTGAAGCAGAAT+AGG	0.424251	2:+73954971	MsaT010492.1:CDS
CTGTGTCTGCTAATGACAAT+AGG	0.426533	2:+73954941	MsaT010492.1:CDS
AGAGGGATGTTGTGGATTTG+AGG	0.451718	2:+73954893	MsaT010492.1:CDS
ACACAGGTTGGTGAACTTGA+TGG	0.468419	2:+73954838	MsaT010492.1:CDS
CGAAGAAACAAGGGAGGAAG+AGG	0.489890	2:+73954875	MsaT010492.1:CDS
TGAACTAAAACAAAAGAATA+CGG	0.518059	2:-73957071	None:intergenic
ATAGGCAACGCGGAGTTTGA+AGG	0.519671	2:-73957031	None:intergenic
AGGGAGGAAGAGGGATGTTG+TGG	0.530372	2:+73954885	MsaT010492.1:CDS
AGGTGATGCATCACAGAGAA+TGG	0.535230	2:+73955011	MsaT010492.1:CDS
CTCTGTGATGCATCACCTGA+AGG	0.537655	2:-73955006	None:intergenic
CAAAAGGATGGATCAGTGGT+GGG	0.540630	2:+73954808	MsaT010492.1:intron
CTTGTGCACACAGAACCAAA+AGG	0.550869	2:-73954918	None:intergenic
TTGTGCACACAGAACCAAAA+GGG	0.577974	2:-73954917	None:intergenic
TGGTGAACTTGATGGAGGGA+AGG	0.605242	2:+73954846	MsaT010492.1:CDS
ACAAAAGGATGGATCAGTGG+TGG	0.605810	2:+73954807	MsaT010492.1:intron
GAATGCGATTGAAGCGCGCA+TGG	0.609128	2:+73955047	MsaT010492.1:CDS
AAGGCACGTTCGAAGAAACA+AGG	0.620215	2:+73954865	MsaT010492.1:CDS
CAGGTTGGTGAACTTGATGG+AGG	0.633962	2:+73954841	MsaT010492.1:CDS
AAAAGGATGGATCAGTGGTG+GGG	0.638533	2:+73954809	MsaT010492.1:intron
AGGTTGGTGAACTTGATGGA+GGG	0.640702	2:+73954842	MsaT010492.1:CDS
GAAGAAACAAGGGAGGAAGA+GGG	0.647199	2:+73954876	MsaT010492.1:CDS
GTCGTAACGAATATTTGCAT+AGG	0.649683	2:-73957049	None:intergenic
AGTGGTGGGGAGTAGAACAC+AGG	0.661039	2:+73954822	MsaT010492.1:CDS
GAATATTTGCATAGGCAACG+CGG	0.666237	2:-73957041	None:intergenic
TGAACAAAAGGATGGATCAG+TGG	0.692488	2:+73954804	MsaT010492.1:intron
GTGGGGAGTAGAACACAGGT+TGG	0.695448	2:+73954826	MsaT010492.1:CDS
CACGTTCGAAGAAACAAGGG+AGG	0.709283	2:+73954869	MsaT010492.1:CDS
AGGCACGTTCGAAGAAACAA+GGG	0.717525	2:+73954866	MsaT010492.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	73954727	73957089	73954727	ID=MsaG010492
Chr2	mRNA	73954727	73957089	73954727	ID=MsaT010492.1;Parent=MsaG010492
Chr2	exon	73954727	73954738	73954727	ID=MsaT010492.1.exon1;Parent=MsaT010492.1
Chr2	CDS	73954727	73954738	73954727	ID=cds.MsaT010492.1;Parent=MsaT010492.1
Chr2	exon	73954814	73955068	73954814	ID=MsaT010492.1.exon2;Parent=MsaT010492.1
Chr2	CDS	73954814	73955068	73954814	ID=cds.MsaT010492.1;Parent=MsaT010492.1
Chr2	exon	73955539	73955595	73955539	ID=MsaT010492.1.exon3;Parent=MsaT010492.1
Chr2	CDS	73955539	73955595	73955539	ID=cds.MsaT010492.1;Parent=MsaT010492.1
Chr2	exon	73956880	73956911	73956880	ID=MsaT010492.1.exon4;Parent=MsaT010492.1
Chr2	CDS	73956880	73956911	73956880	ID=cds.MsaT010492.1;Parent=MsaT010492.1
Chr2	exon	73957017	73957089	73957017	ID=MsaT010492.1.exon5;Parent=MsaT010492.1
Chr2	CDS	73957017	73957089	73957017	ID=cds.MsaT010492.1;Parent=MsaT010492.1

Gene Sequence

>MsaT010492.1

ATGGTGCATCTGGATGGATCAGTGGTGGGGAGTAGAACACAGGTTGGTGAACTTGATGGAGGGAAGGCACGTTCGAAGAAACAAGGGAGGAAGAGGGATGTTGTGGATTTGAGGACCCTTTTGGTTCTGTGTGCACAAGCTGTGTCTGCTAATGACAATAGGACTGCTAATGAATTGTTGAAGCAGAATAGGAAGCATTCTTGTCCTTCAGGTGATGCATCACAGAGAATGGCTCATTACTTTGCGAATGCGATTGAAGCGCGCATGATTCAAGTCAACAGAAGTGACTATGACAATGTAATTGGAGCTTTGCCATATCTGAAAATGGTTCGTGACTCCAAAGATATTAAATTCATGTCTGCTTTACGGTCCTTCAAACTCCGCGTTGCCTATGCAAATATTCGTTACGACCGTATTCTTTTGTTTTAG

Protein sequence

>MsaT010492.1

MVHLDGSVVGSRTQVGELDGGKARSKKQGRKRDVVDLRTLLVLCAQAVSANDNRTANELLKQNRKHSCPSGDASQRMAHYFANAIEARMIQVNRSDYDNVIGALPYLKMVRDSKDIKFMSALRSFKLRVAYANIRYDRILLF*