AlfalfaGEDB | MsaG010502

M. sativa ssp. caerulea / MsaG010502

KEGG: -
GO: GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0007275 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009555 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0045893 GO:0045935 GO:0046907 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010502	KEH39224.1	95.770	331	6	2	1	331	1	323	0.0	638

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010502	sp\|Q9M2K4\|BZP61_ARATH	59.249	346	109	10	1	331	1	329	8.24e-120	351

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010502	tr\|A0A072VB17\|A0A072VB17_MEDTR	95.770	331	6	2	1	331	1	323	0.0	638

TFs/TRs:

Gene ID	Type	Classification
MsaG010502	TF	bZIP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010502	MtrunA17_Chr2g0325131	95.758	330	6	2	1	330	1	322	0.0	638
MsaG010502	MtrunA17_Chr4g0040891	62.931	348	92	14	1	331	1	328	5.14e-125	361
MsaG010502	MtrunA17_Chr2g0316551	53.870	323	116	10	1	302	1	311	2.54e-96	289
MsaG010502	MtrunA17_Chr8g0380611	35.094	265	145	8	44	294	73	324	2.96e-28	112
MsaG010502	MtrunA17_Chr5g0432701	48.936	94	48	0	198	291	158	251	1.93e-20	90.9
MsaG010502	MtrunA17_Chr4g0036071	44.828	116	56	1	197	312	358	465	2.91e-20	91.3
MsaG010502	MtrunA17_Chr2g0329551	44.737	114	58	2	197	310	219	327	2.55e-19	88.2
MsaG010502	MtrunA17_Chr3g0107491	46.237	93	50	0	199	291	177	269	1.40e-18	85.5
MsaG010502	MtrunA17_Chr6g0463571	46.000	100	54	0	197	296	149	248	5.02e-18	83.2
MsaG010502	MtrunA17_Chr3g0128781	45.745	94	51	0	198	291	107	200	1.73e-17	81.6
MsaG010502	MtrunA17_Chr1g0156051	48.980	98	46	2	198	293	386	481	1.26e-12	68.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010502	AT3G58120.1	59.249	346	109	10	1	331	1	329	8.38e-121	351
MsaG010502	AT2G42380.2	57.225	346	107	8	1	331	1	320	8.09e-115	335
MsaG010502	AT2G42380.1	53.757	346	108	9	1	331	1	309	2.76e-103	305
MsaG010502	AT3G58120.2	58.020	293	96	8	1	278	1	281	6.87e-100	296
MsaG010502	AT2G42380.5	56.701	291	87	7	1	278	1	265	8.47e-93	277
MsaG010502	AT2G42380.3	49.206	252	89	7	1	239	1	226	9.63e-62	197
MsaG010502	AT2G42380.4	49.206	252	89	7	1	239	1	226	9.63e-62	197
MsaG010502	AT1G58110.1	30.448	335	161	11	2	294	20	324	1.81e-27	110
MsaG010502	AT1G58110.2	30.448	335	161	11	2	294	20	324	1.81e-27	110
MsaG010502	AT1G43700.1	46.491	114	56	1	185	293	175	288	5.44e-21	92.4
MsaG010502	AT4G38900.2	48.421	95	49	0	197	291	392	486	5.50e-20	91.3
MsaG010502	AT4G38900.3	48.421	95	49	0	197	291	392	486	5.50e-20	91.3
MsaG010502	AT5G04840.1	29.276	304	163	8	2	296	5	265	2.17e-19	87.4
MsaG010502	AT2G40620.1	46.316	95	51	0	197	291	146	240	3.31e-19	87.8
MsaG010502	AT1G06850.1	48.387	93	48	0	199	291	148	240	1.11e-18	85.9
MsaG010502	AT1G06070.1	46.316	95	51	0	197	291	208	302	1.35e-18	86.7
MsaG010502	AT2G31370.5	31.174	247	143	5	62	291	57	293	4.28e-18	84.7
MsaG010502	AT2G21230.4	46.392	97	52	0	197	293	368	464	4.59e-18	85.5
MsaG010502	AT2G21230.1	46.392	97	52	0	197	293	368	464	4.59e-18	85.5
MsaG010502	AT2G31370.2	31.174	247	143	5	62	291	57	293	4.75e-18	84.7
MsaG010502	AT2G31370.4	31.174	247	143	5	62	291	57	293	4.75e-18	84.7
MsaG010502	AT2G31370.1	31.174	247	143	5	62	291	57	293	4.75e-18	84.7
MsaG010502	AT2G31370.7	31.174	247	143	5	62	291	57	293	4.75e-18	84.7
MsaG010502	AT2G31370.3	31.174	247	143	5	62	291	57	293	4.75e-18	84.7
MsaG010502	AT2G31370.6	31.174	247	143	5	62	291	57	293	4.75e-18	84.7
MsaG010502	AT4G38900.1	45.545	101	49	1	197	291	392	492	8.41e-18	84.7
MsaG010502	AT1G35490.2	28.226	248	133	7	46	291	54	258	5.28e-17	80.5
MsaG010502	AT1G35490.1	28.226	248	133	7	46	291	54	258	5.28e-17	80.5
MsaG010502	AT5G04840.2	29.371	286	150	8	2	278	5	247	4.18e-16	77.0
MsaG010502	AT2G21230.3	42.718	103	53	1	197	293	368	470	1.02e-15	78.2
MsaG010502	AT2G21230.2	46.341	82	44	0	197	278	368	449	3.30e-14	73.6
MsaG010502	AT5G07160.1	41.237	97	57	0	195	291	44	140	2.95e-12	64.3
MsaG010502	AT1G06850.2	68.889	45	14	0	198	242	147	191	5.00e-11	62.4

Find 51 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGTGACATGTTTGGGATCTT+AGG	0.259620	2:+74086011	None:intergenic
GTTTGTAGTGACAATGTTAT+TGG	0.263094	2:+74085932	None:intergenic
GCATTAGAATCTTGGCAAAT+AGG	0.275046	2:-74085021	MsaT010502.1:intron
GAGAAGAAGGAAAATGATTT+AGG	0.296863	2:-74085588	MsaT010502.1:CDS
GCCAACTTGGTGACATGTTT+GGG	0.333815	2:+74086003	None:intergenic
CATTGGCTTTCTACCTCATC+AGG	0.351950	2:+74085522	None:intergenic
GCGTAGTGTAACTTCATTGC+AGG	0.377738	2:-74084945	MsaT010502.1:intron
GGCCAACTTGGTGACATGTT+TGG	0.381627	2:+74086002	None:intergenic
GACAATGTTATTGGTTGAAA+TGG	0.385822	2:+74085941	None:intergenic
TCTGTTTGAGAATCACATAT+TGG	0.388915	2:+74083462	None:intergenic
CCATCTTCTTGAGGTTCTGA+TGG	0.391631	2:+74083526	None:intergenic
GAAGAATAAACAAGAGAAGA+AGG	0.396694	2:-74085601	MsaT010502.1:CDS
ACCAATGCTTGATGATTGTC+GGG	0.399558	2:-74085799	MsaT010502.1:CDS
AAGAAGATGGAAAATGCTAA+TGG	0.406779	2:-74083513	MsaT010502.1:CDS
ATCAGAATCAGAACCCTTCA+TGG	0.433073	2:-74085905	MsaT010502.1:CDS
GGAGATAGAAAGATTAAGAC+AGG	0.441141	2:-74083556	MsaT010502.1:CDS
GCATTGTTGTTGTTACTTTG+AGG	0.444336	2:+74085480	None:intergenic
CACCAATGCTTGATGATTGT+CGG	0.462711	2:-74085800	MsaT010502.1:CDS
TTCTGATCTGAAGGACTCGA+AGG	0.485897	2:+74085651	None:intergenic
GGTAGAAAGCCAATGCAAAC+AGG	0.488493	2:-74085514	MsaT010502.1:CDS
CCATCAGAACCTCAAGAAGA+TGG	0.490491	2:-74083526	MsaT010502.1:CDS
ATGTTTAGTGATGAAATATC+TGG	0.505923	2:-74085711	MsaT010502.1:CDS
TGAAAAGCTTGTCTTGTGCA+AGG	0.507196	2:+74084661	None:intergenic
TTATTGGTTGAAATGGATGT+TGG	0.515770	2:+74085948	None:intergenic
TTGACAAAATTCTGATCTGA+AGG	0.516864	2:+74085642	None:intergenic
CCCCGACAATCATCAAGCAT+TGG	0.530465	2:+74085798	None:intergenic
TTTAGGAGAGATGAAGAAAG+AGG	0.538946	2:-74085571	MsaT010502.1:CDS
AGGAACTCATCCACCCATGA+AGG	0.539506	2:+74085891	None:intergenic
GAAAAGCTTGTCTTGTGCAA+GGG	0.539760	2:+74084662	None:intergenic
CTGATCCAAAGAGAGTCAAA+AGG	0.572655	2:-74085434	MsaT010502.1:intron
TTCGATGAAGACAACGTTGG+TGG	0.575587	2:+74085675	None:intergenic
TCCCAAACATGTCACCAAGT+TGG	0.580152	2:-74086004	MsaT010502.1:CDS
AGATATTTCATCACTAAACA+TGG	0.586033	2:+74085713	None:intergenic
GACATGTTTGGGATCTTAGG+AGG	0.588767	2:+74086014	None:intergenic
CTCATCAAGAGGCATTGAAG+AGG	0.590362	2:-74083578	MsaT010502.1:CDS
CAAGGCGAGGTGCTCATCGA+AGG	0.594155	2:-74085854	MsaT010502.1:CDS
TCATCAAGAGGCATTGAAGA+GGG	0.599782	2:-74083577	MsaT010502.1:CDS
GAATCAGAACCCTTCATGGG+TGG	0.607660	2:-74085901	MsaT010502.1:CDS
ATTGAAATATGAACCTGATG+AGG	0.608223	2:-74085535	MsaT010502.1:CDS
TCAGAATCAGAACCCTTCAT+GGG	0.609308	2:-74085904	MsaT010502.1:CDS
TCTGATCTGAAGGACTCGAA+GGG	0.610267	2:+74085652	None:intergenic
TTTACATGCAGCTCATCAAG+AGG	0.610732	2:-74083589	MsaT010502.1:intron
ATGAGCACCTCGCCTTGCCG+AGG	0.614435	2:+74085860	None:intergenic
GGAACTCATCCACCCATGAA+GGG	0.626852	2:+74085892	None:intergenic
CAAATAGGCAATCAGCACAA+AGG	0.647617	2:-74085006	MsaT010502.1:CDS
GCGAGGTGCTCATCGAAGGT+CGG	0.657525	2:-74085850	MsaT010502.1:CDS
CAGCACAAAGGTCACGTGTG+AGG	0.661809	2:-74084994	MsaT010502.1:CDS
GCCTTGCCGAGGAAAAGTCG+AGG	0.688307	2:+74085871	None:intergenic
GATTGTCGGGGTAAACACGA+TGG	0.708511	2:-74085786	MsaT010502.1:CDS
GGGTTCGATGAAGACAACGT+TGG	0.721008	2:+74085672	None:intergenic
CCAATGCTTGATGATTGTCG+GGG	0.745183	2:-74085798	MsaT010502.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	74083437	74086048	74083437	ID=MsaG010502
Chr2	mRNA	74083437	74086048	74083437	ID=MsaT010502.1;Parent=MsaG010502
Chr2	exon	74083437	74083600	74083437	ID=MsaT010502.1.exon4;Parent=MsaT010502.1
Chr2	CDS	74083437	74083600	74083437	ID=cds.MsaT010502.1;Parent=MsaT010502.1
Chr2	exon	74084655	74084781	74084655	ID=MsaT010502.1.exon3;Parent=MsaT010502.1
Chr2	CDS	74084655	74084781	74084655	ID=cds.MsaT010502.1;Parent=MsaT010502.1
Chr2	exon	74084946	74085036	74084946	ID=MsaT010502.1.exon2;Parent=MsaT010502.1
Chr2	CDS	74084946	74085036	74084946	ID=cds.MsaT010502.1;Parent=MsaT010502.1
Chr2	exon	74085435	74086048	74085435	ID=MsaT010502.1.exon1;Parent=MsaT010502.1
Chr2	CDS	74085435	74086048	74085435	ID=cds.MsaT010502.1;Parent=MsaT010502.1

Gene Sequence

>MsaT010502.1

ATGGCACAATTACCTCCTAAGATCCCAAACATGTCACCAAGTTGGCCAGATTTTTCCAAACACCAAAAAAATATTATGCCAACATCCATTTCAACCAATAACATTGTCACTACAAACAATTATCAGAATCAGAACCCTTCATGGGTGGATGAGTTCCTCGACTTTTCCTCGGCAAGGCGAGGTGCTCATCGAAGGTCGGTCAGCGATTCAGTCACATTCTTAGAAACACCAATGCTTGATGATTGTCGGGGTAAACACGATGGTAACAACAATGACAACGAGTTCGACAAGTTTGATGATGAACAATTTTTGTCCATGTTTAGTGATGAAATATCTGGTGTCAATAACATGCCACCAACGTTGTCTTCATCGAACCCTTCGAGTCCTTCAGATCAGAATTTTGTCAATGATGATAATGAGAAAGAGAAGAATAAACAAGAGAAGAAGGAAAATGATTTAGGAGAGATGAAGAAAGAGGAAGATGAGAAGCAATTGAAATATGAACCTGATGAGGTAGAAAGCCAATGCAAACAGGAAAATTCACAGCCTCAAAGTAACAACAACAATGCAACTTCTTCAAATGATAGAATTACTGATCCAAAGAGAGTCAAAAGAATCTTGGCAAATAGGCAATCAGCACAAAGGTCACGTGTGAGGAAGCTGCAATACATATCAGAGCTTGAGCGTAGTGTAACTTCATTGCAGGCTGAAGTTTCAGTGCTATCTCCAAGAGTTGCATTTTTGGATCATCAACGATTGCTTCTAAATGTTGACAACAGTGCTCTCAAGCAAAGAATTGCAGCCCTTGCACAAGACAAGCTTTTCAAAGATGCTCATCAAGAGGCATTGAAGAGGGAGATAGAAAGATTAAGACAGGTATATCACCATCAGAACCTCAAGAAGATGGAAAATGCTAATGGATCACCCTTACCATCCCCATCACAAAAGCCAATATGTGATTCTCAAACAGAAAGCGAACAACTACTCAATGTATGA

Protein sequence

>MsaT010502.1

MAQLPPKIPNMSPSWPDFSKHQKNIMPTSISTNNIVTTNNYQNQNPSWVDEFLDFSSARRGAHRRSVSDSVTFLETPMLDDCRGKHDGNNNDNEFDKFDDEQFLSMFSDEISGVNNMPPTLSSSNPSSPSDQNFVNDDNEKEKNKQEKKENDLGEMKKEEDEKQLKYEPDEVESQCKQENSQPQSNNNNATSSNDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKLFKDAHQEALKREIERLRQVYHHQNLKKMENANGSPLPSPSQKPICDSQTESEQLLNV*