AlfalfaGEDB | MsaG010521

M. sativa ssp. caerulea / MsaG010521

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010380 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051193 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090056 GO:0140110 GO:1900055 GO:1900056 GO:1901401 GO:1901463 GO:1902680 GO:1903506 GO:1903508 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141
PFAM: PF00249.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010521	XP_013465151.1	86.085	424	14	2	1	379	1	424	0.0	726

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010521	sp\|Q9SIV3\|GLK1_ARATH	50.135	371	129	14	56	379	59	420	3.91e-87	273

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010521	tr\|A0A072VC54\|A0A072VC54_MEDTR	86.085	424	14	2	1	379	1	424	0.0	726

TFs/TRs:

Gene ID	Type	Classification
MsaG010521	TF	GARP-G2-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000230	MsaG010521	0.824490	1.389825e-53	3.447788e-51
MsaG000281	MsaG010521	0.825281	9.063132e-54	2.297467e-51
MsaG000386	MsaG010521	0.851385	1.755753e-60	9.980886e-58
MsaG000456	MsaG010521	0.830106	6.362799e-55	1.847067e-52
MsaG000855	MsaG010521	0.800634	2.199598e-48	3.016920e-46
MsaG001191	MsaG010521	0.818168	3.933421e-52	8.245760e-50
MsaG001237	MsaG010521	0.836573	1.581887e-56	5.554779e-54
MsaG001672	MsaG010521	0.838775	4.331502e-57	1.627388e-54
MsaG002013	MsaG010521	0.811723	1.041986e-50	1.855937e-48
MsaG002218	MsaG010521	0.807613	7.885912e-50	1.271429e-47
MsaG002273	MsaG010521	0.820630	1.087120e-52	2.431063e-50
MsaG002866	MsaG010521	0.825637	7.471177e-54	1.912594e-51
MsaG003210	MsaG010521	0.809729	2.798611e-50	4.748092e-48
MsaG003394	MsaG010521	0.811971	9.205220e-51	1.649667e-48
MsaG004204	MsaG010521	0.872239	7.591240e-67	9.677471e-64
MsaG004319	MsaG010521	0.839814	2.335229e-57	9.063439e-55
MsaG004641	MsaG010521	0.812550	6.891550e-51	1.252877e-48
MsaG005000	MsaG010521	0.831912	2.303815e-55	7.046216e-53
MsaG005018	MsaG010521	0.805627	2.061919e-49	3.171903e-47
MsaG005031	MsaG010521	0.802233	1.037854e-48	1.476035e-46
MsaG005435	MsaG010521	0.811564	1.127447e-50	2.000405e-48
MsaG005438	MsaG010521	0.813138	5.129425e-51	9.462790e-49
MsaG005442	MsaG010521	0.804586	3.395966e-49	5.099178e-47
MsaG005443	MsaG010521	0.823642	2.193044e-53	5.316730e-51
MsaG005444	MsaG010521	0.804765	3.116833e-49	4.699652e-47
MsaG005506	MsaG010521	0.800576	2.259958e-48	3.095644e-46
MsaG005683	MsaG010521	0.807854	7.014589e-50	1.137543e-47
MsaG005700	MsaG010521	0.829708	7.946520e-55	2.280641e-52
MsaG005838	MsaG010521	0.809724	2.805466e-50	4.759118e-48
MsaG005811	MsaG010521	0.824355	1.495077e-53	3.695308e-51
MsaG005864	MsaG010521	0.821295	7.655358e-53	1.742375e-50
MsaG006051	MsaG010521	0.829866	7.276679e-55	2.097900e-52
MsaG006175	MsaG010521	0.838089	6.498192e-57	2.389850e-54
MsaG006902	MsaG010521	0.833699	8.330366e-56	2.684405e-53
MsaG007729	MsaG010521	0.872740	5.178036e-67	6.744466e-64
MsaG007833	MsaG010521	0.823261	2.689557e-53	6.453182e-51
MsaG008426	MsaG010521	0.809092	3.828954e-50	6.397158e-48
MsaG008535	MsaG010521	0.800571	2.264467e-48	3.101525e-46
MsaG008552	MsaG010521	0.803369	6.065522e-49	8.854488e-47
MsaG008565	MsaG010521	0.812536	6.940437e-51	1.261306e-48
MsaG008569	MsaG010521	0.804293	3.907015e-49	5.827128e-47
MsaG009501	MsaG010521	0.838613	4.768066e-57	1.782403e-54
MsaG009504	MsaG010521	0.846605	3.682168e-59	1.779340e-56
MsaG010031	MsaG010521	0.851265	1.897547e-60	1.074282e-57
MsaG010066	MsaG010521	0.817637	5.178305e-52	1.070731e-49
MsaG010517	MsaG010521	0.841643	7.786770e-58	3.201445e-55
MsaG010521	MsaG010533	0.803541	5.588725e-49	8.191172e-47
MsaG010521	MsaG010835	0.806977	1.074277e-49	1.706029e-47
MsaG010521	MsaG010868	0.829377	9.553596e-55	2.715958e-52
MsaG010521	MsaG011096	0.817931	4.448667e-52	9.268830e-50
MsaG010521	MsaG011275	0.840013	2.073675e-57	8.098866e-55
MsaG010521	MsaG011287	0.881085	6.820276e-70	1.294670e-66
MsaG010521	MsaG011599	0.837422	9.622736e-57	3.467439e-54
MsaG010521	MsaG011806	0.857569	2.909708e-62	2.064776e-59
MsaG010521	MsaG012894	0.837276	1.048341e-56	3.760374e-54
MsaG010521	MsaG013621	0.802587	8.784716e-49	1.259547e-46
MsaG010521	MsaG013909	0.815211	1.797528e-51	3.493379e-49
MsaG010521	MsaG013993	0.805675	2.014748e-49	3.102818e-47
MsaG010521	MsaG014184	0.839792	2.366046e-57	9.176534e-55
MsaG010521	MsaG014541	0.805567	2.121439e-49	3.258856e-47
MsaG010521	MsaG014810	0.846124	4.975173e-59	2.366037e-56
MsaG010521	MsaG015082	0.826270	5.293963e-54	1.379321e-51
MsaG010521	MsaG015978	0.809678	2.869986e-50	4.863168e-48
MsaG010521	MsaG016685	0.806343	1.460039e-49	2.284315e-47
MsaG010521	MsaG016708	0.819090	2.435913e-52	5.230616e-50
MsaG010521	MsaG017110	0.829839	7.386475e-55	2.127871e-52
MsaG010521	MsaG017209	0.803424	5.908469e-49	8.636213e-47
MsaG010521	MsaG017718	0.826702	4.180429e-54	1.102418e-51
MsaG010521	MsaG017820	0.812708	6.365485e-51	1.161780e-48
MsaG010521	MsaG018170	0.801774	1.288334e-48	1.813213e-46
MsaG010521	MsaG018307	0.827421	2.819043e-54	7.584642e-52
MsaG010521	MsaG018372	0.866935	3.985621e-65	4.071598e-62
MsaG010521	MsaG018773	0.884217	4.969472e-71	1.095812e-67
MsaG010521	MsaG018791	0.848215	1.336560e-59	6.817496e-57
MsaG010521	MsaG019039	0.800783	2.051133e-48	2.822790e-46
MsaG010521	MsaG019095	0.815695	1.404155e-51	2.762559e-49
MsaG010521	MsaG019410	0.817509	5.532041e-52	1.140152e-49
MsaG010521	MsaG019731	0.840390	1.654952e-57	6.540445e-55
MsaG010521	MsaG020247	0.878350	6.325633e-69	1.057930e-65
MsaG010521	MsaG020580	0.801866	1.233814e-48	1.740149e-46
MsaG010521	MsaG020843	0.815037	1.963277e-51	3.798720e-49
MsaG010521	MsaG020874	0.835816	2.457723e-56	8.436036e-54
MsaG010521	MsaG020875	0.817017	7.128360e-52	1.450707e-49
MsaG010521	MsaG020983	0.848991	8.170803e-60	4.278480e-57
MsaG010521	MsaG020984	0.839241	3.285650e-57	1.252444e-54
MsaG010521	MsaG021012	0.820119	1.421948e-52	3.137374e-50
MsaG010521	MsaG021024	0.802154	1.077581e-48	1.529720e-46
MsaG010521	MsaG021201	0.804488	3.559448e-49	5.332492e-47
MsaG010521	MsaG022382	0.834256	6.053112e-56	1.982898e-53
MsaG010521	MsaG022628	0.837428	9.590003e-57	3.456242e-54
MsaG010521	MsaG023884	0.811346	1.256666e-50	2.217798e-48
MsaG010521	MsaG025148	0.816219	1.073778e-51	2.140927e-49
MsaG010521	MsaG025691	0.829941	6.977091e-55	2.015876e-52
MsaG010521	MsaG026721	0.822227	4.670864e-53	1.089797e-50
MsaG010521	MsaG027039	0.855458	1.204623e-61	7.912624e-59
MsaG010521	MsaG027361	0.816334	1.012712e-51	2.025055e-49
MsaG010521	MsaG027800	0.863669	4.197020e-64	3.761113e-61
MsaG010521	MsaG028034	0.833129	1.154054e-55	3.657147e-53
MsaG010521	MsaG028374	0.831937	2.271739e-55	6.953110e-53
MsaG010521	MsaG028457	0.832494	1.656346e-55	5.152036e-53
MsaG010521	MsaG028485	0.838790	4.294921e-57	1.614405e-54
MsaG010521	MsaG028500	0.808227	5.847480e-50	9.568073e-48
MsaG010521	MsaG028501	0.840000	2.090885e-57	8.162320e-55
MsaG010521	MsaG028554	0.812330	7.693027e-51	1.390918e-48
MsaG010521	MsaG028715	0.817808	4.740142e-52	9.845006e-50
MsaG010521	MsaG028716	0.836626	1.533448e-56	5.393189e-54
MsaG010521	MsaG028811	0.842304	5.219059e-58	2.191481e-55
MsaG010521	MsaG028929	0.809414	3.268819e-50	5.503813e-48
MsaG010521	MsaG029319	0.841041	1.119630e-57	4.516233e-55
MsaG010521	MsaG029320	0.856192	7.370337e-62	4.972060e-59
MsaG010521	MsaG029484	0.832354	1.793122e-55	5.554709e-53
MsaG010521	MsaG029745	0.836790	1.393779e-56	4.926348e-54
MsaG010521	MsaG030507	0.808128	6.137933e-50	1.001937e-47
MsaG010521	MsaG031277	0.833350	1.017269e-55	3.244440e-53
MsaG010521	MsaG033249	0.804119	4.244600e-49	6.305063e-47
MsaG010521	MsaG033769	0.816067	1.161063e-51	2.305921e-49
MsaG010521	MsaG033812	0.826990	3.570282e-54	9.490655e-52
MsaG010521	MsaG034259	0.831286	3.281017e-55	9.851946e-53
MsaG010521	MsaG034827	0.819762	1.714833e-52	3.747580e-50
MsaG010521	MsaG034829	0.819488	1.978876e-52	4.293789e-50
MsaG010521	MsaG036332	0.840939	1.190846e-57	4.787902e-55
MsaG010521	MsaG037861	0.831131	3.579512e-55	1.070066e-52
MsaG010521	MsaG037865	0.837074	1.180034e-56	4.207034e-54
MsaG010521	MsaG037866	0.827799	2.290033e-54	6.227157e-52
MsaG010521	MsaG037867	0.843433	2.621910e-58	1.141585e-55
MsaG010521	MsaG038016	0.807121	1.001942e-49	1.596582e-47
MsaG010521	MsaG038395	0.800233	2.652555e-48	3.605220e-46
MsaG010521	MsaG039206	0.858037	2.115825e-62	1.527810e-59
MsaG010521	MsaG039621	0.829744	7.789630e-55	2.237887e-52
MsaG010521	MsaG039622	0.811161	1.378284e-50	2.421383e-48
MsaG010521	MsaG041684	0.825161	9.674297e-54	2.444319e-51
MsaG010521	MsaG041686	0.804874	2.958594e-49	4.472404e-47
MsaG010521	MsaG043415	0.817956	4.389704e-52	9.152096e-50
MsaG010521	MsaG044063	0.825207	9.434444e-54	2.386721e-51
MsaG010521	MsaG044336	0.810306	2.105054e-50	3.621778e-48
MsaG010521	MsaG044384	0.854472	2.321377e-61	1.471800e-58
MsaG010521	MsaG044439	0.850564	2.983887e-60	1.648930e-57
MsaG010521	MsaG044919	0.805718	1.973074e-49	3.041730e-47
MsaG010521	MsaG045021	0.800687	2.145120e-48	2.945795e-46
MsaG010521	MsaG045072	0.829993	6.779457e-55	1.961625e-52
MsaG010521	MsaG045293	0.822994	3.102343e-53	7.389868e-51
MsaG010521	MsaG045339	0.823941	1.867987e-53	4.565180e-51
MsaG010521	MsaG045376	0.800933	1.912197e-48	2.640415e-46
MsaG010521	MsaG045403	0.814525	2.547163e-51	4.865182e-49
MsaG010521	MsaG045522	0.804666	3.269448e-49	4.918267e-47
MsaG010521	MsaG046053	0.834531	5.168231e-56	1.707061e-53
MsaG010521	MsaG046383	0.808700	4.639077e-50	7.678108e-48
MsaG010521	MsaG046539	0.814268	2.900694e-51	5.504962e-49
MsaG010521	MsaG046588	0.806581	1.301374e-49	2.047577e-47
MsaG010521	MsaG046762	0.834872	4.244656e-56	1.416392e-53
MsaG010521	MsaG047054	0.808323	5.579877e-50	9.151112e-48
MsaG010521	MsaG001257	0.840289	1.758823e-57	6.928573e-55
MsaG010521	MsaG000067	0.824406	1.454464e-53	3.599825e-51
MsaG010521	MsaG001106	0.820802	9.927283e-53	2.230131e-50
MsaG010521	MsaG009037	0.816788	8.019081e-52	1.622325e-49
MsaG010521	MsaG013738	0.829784	7.616431e-55	2.190657e-52
MsaG010521	MsaG014180	0.816702	8.384621e-52	1.692471e-49
MsaG010521	MsaG015534	0.806892	1.119206e-49	1.773840e-47
MsaG010521	MsaG011840	0.812585	6.769910e-51	1.231847e-48
MsaG010521	MsaG032410	0.842091	5.938622e-58	2.476765e-55
MsaG010521	MsaG030439	0.800996	1.856857e-48	2.567607e-46
MsaG010521	MsaG033467	0.828732	1.367101e-54	3.816000e-52
MsaG010521	MsaG032243	0.807857	7.003139e-50	1.135789e-47
MsaG010521	MsaG032845	0.816023	1.187223e-51	2.355272e-49
MsaG010521	MsaG033345	0.800250	2.630529e-48	3.576715e-46
MsaG010521	MsaG033325	0.838538	4.986445e-57	1.859663e-54
MsaG010521	MsaG033454	0.849625	5.449549e-60	2.916395e-57
MsaG010521	MsaG034264	0.800738	2.094476e-48	2.879508e-46
MsaG010521	MsaG037271	0.828044	1.999772e-54	5.475529e-52
MsaG010521	MsaG038765	0.823260	2.691453e-53	6.457500e-51
MsaG010521	MsaG039226	0.844651	1.240364e-58	5.618938e-56
MsaG010521	MsaG039736	0.815298	1.719497e-51	3.349110e-49
MsaG010521	MsaG035272	0.801087	1.779392e-48	2.465535e-46
MsaG010521	MsaG036984	0.827526	2.660170e-54	7.178530e-52
MsaG010521	MsaG045440	0.869068	8.271861e-66	9.219955e-63
MsaG010521	MsaG045876	0.804240	4.006568e-49	5.968157e-47
MsaG010521	MsaG043312	0.809471	3.177886e-50	5.358241e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010521	MtrunA17_Chr2g0324891	86.085	424	14	2	1	379	1	424	0.0	681
MsaG010521	MtrunA17_Chr4g0040481	57.834	434	113	17	1	377	1	421	7.96e-132	384
MsaG010521	MtrunA17_Chr5g0400241	37.751	249	129	6	129	372	305	532	9.02e-44	159
MsaG010521	MtrunA17_Chr4g0054981	32.317	328	184	12	70	377	239	548	7.39e-41	151
MsaG010521	MtrunA17_Chr3g0137101	50.000	74	37	0	129	202	192	265	1.62e-17	84.3
MsaG010521	MtrunA17_Chr2g0304841	33.121	157	90	5	130	276	208	359	1.81e-17	84.3
MsaG010521	MtrunA17_Chr1g0161431	56.061	66	29	0	128	193	193	258	1.79e-16	81.3
MsaG010521	MtrunA17_Chr4g0067981	45.977	87	45	1	134	218	214	300	2.64e-16	80.5
MsaG010521	MtrunA17_Chr4g0009851	39.362	94	54	2	99	191	134	225	1.00e-15	77.4
MsaG010521	MtrunA17_Chr1g0149841	53.846	65	30	0	133	197	189	253	1.31e-15	78.2
MsaG010521	MtrunA17_Chr7g0255711	51.667	60	29	0	134	193	90	149	5.11e-15	75.1
MsaG010521	MtrunA17_Chr4g0009981	44.000	75	40	1	117	191	100	172	1.61e-14	72.8
MsaG010521	MtrunA17_Chr4g0009901	43.678	87	44	1	105	191	143	224	2.48e-14	72.8
MsaG010521	MtrunA17_Chr4g0031961	43.038	79	43	1	134	212	130	206	2.90e-14	72.8
MsaG010521	MtrunA17_Chr2g0294911	53.333	60	28	0	134	193	210	269	3.49e-14	73.9
MsaG010521	MtrunA17_Chr8g0376881	46.377	69	37	0	134	202	208	276	9.95e-14	72.4
MsaG010521	MtrunA17_Chr7g0275891	33.571	140	71	5	130	250	186	322	1.26e-13	71.2
MsaG010521	MtrunA17_Chr4g0074411	34.247	146	81	5	84	217	140	282	7.54e-13	70.1
MsaG010521	MtrunA17_Chr4g0074401	50.909	55	27	0	133	187	201	255	7.66e-13	69.7
MsaG010521	MtrunA17_Chr3g0123131	43.662	71	40	0	134	204	198	268	8.66e-13	69.7
MsaG010521	MtrunA17_Chr3g0134481	51.064	47	23	0	140	186	137	183	3.25e-12	64.7
MsaG010521	MtrunA17_Chr6g0461641	54.545	55	24	1	137	190	44	98	4.37e-12	67.0
MsaG010521	MtrunA17_Chr6g0473731	45.205	73	39	1	134	206	94	165	5.64e-12	67.0
MsaG010521	MtrunA17_Chr4g0062921	43.056	72	40	1	121	191	221	292	8.63e-12	66.2
MsaG010521	MtrunA17_Chr1g0198601	50.000	60	29	1	133	191	209	268	9.19e-12	65.9
MsaG010521	MtrunA17_Chr7g0275401	33.929	112	67	2	86	191	138	248	1.09e-11	65.1
MsaG010521	MtrunA17_Chr5g0422621	35.922	103	58	2	97	191	153	255	1.09e-11	65.5
MsaG010521	MtrunA17_Chr4g0074421	31.288	163	67	6	62	184	25	182	2.07e-11	62.8
MsaG010521	MtrunA17_Chr2g0321461	53.846	52	23	1	137	187	47	98	2.18e-11	64.7
MsaG010521	MtrunA17_Chr3g0134461	49.057	53	27	0	132	184	140	192	3.45e-11	62.0
MsaG010521	MtrunA17_Chr4g0045361	49.180	61	30	1	134	193	273	333	3.54e-11	64.3
MsaG010521	MtrunA17_Chr1g0149831	45.455	66	33	1	132	197	125	187	4.06e-11	62.4
MsaG010521	MtrunA17_Chr1g0190301	49.153	59	29	1	133	190	173	231	5.66e-11	63.5
MsaG010521	MtrunA17_Chr2g0291021	53.704	54	24	1	135	187	49	102	5.69e-11	63.2
MsaG010521	MtrunA17_Chr4g0009991	44.118	68	36	1	117	184	51	116	6.20e-11	59.7
MsaG010521	MtrunA17_Chr5g0417521	53.846	52	23	1	137	187	17	68	6.40e-11	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010521	AT2G20570.1	50.135	371	129	14	56	379	59	420	3.97e-88	273
MsaG010521	AT2G20570.2	48.062	387	129	15	56	379	59	436	4.37e-84	263
MsaG010521	AT5G44190.1	44.444	378	148	13	28	376	40	384	2.17e-72	231
MsaG010521	AT5G44190.2	41.018	334	134	13	28	336	40	335	1.86e-58	194
MsaG010521	AT2G20570.3	39.084	371	123	15	56	379	59	373	8.68e-45	159
MsaG010521	AT4G18020.3	34.595	370	182	13	32	377	191	524	1.97e-34	134
MsaG010521	AT4G18020.2	34.595	370	182	13	32	377	191	524	1.97e-34	134
MsaG010521	AT4G18020.1	34.595	370	182	13	32	377	191	524	1.97e-34	134
MsaG010521	AT4G18020.6	34.595	370	182	13	32	377	191	524	1.97e-34	134
MsaG010521	AT4G18020.9	34.595	370	182	13	32	377	191	524	1.97e-34	134
MsaG010521	AT4G18020.8	41.398	186	93	5	32	208	191	369	8.92e-31	122
MsaG010521	AT4G18020.11	41.398	186	93	5	32	208	191	369	8.92e-31	122
MsaG010521	AT4G18020.4	41.398	186	93	5	32	208	191	369	8.92e-31	122
MsaG010521	AT4G18020.5	41.398	186	93	5	32	208	191	369	8.92e-31	122
MsaG010521	AT4G18020.10	41.398	186	93	5	32	208	191	369	8.92e-31	122
MsaG010521	AT4G18020.7	41.398	186	93	5	32	208	191	369	8.92e-31	122
MsaG010521	AT5G59570.2	37.226	137	71	3	88	210	81	216	9.30e-19	86.3
MsaG010521	AT5G59570.1	37.226	137	71	3	88	210	81	216	9.30e-19	86.3
MsaG010521	AT5G58080.1	52.113	71	34	0	123	193	182	252	6.12e-17	82.8
MsaG010521	AT2G01760.3	54.688	64	29	0	130	193	130	193	6.39e-16	78.2
MsaG010521	AT4G31920.1	40.000	95	54	1	127	218	175	269	7.56e-16	79.3
MsaG010521	AT3G16857.3	46.250	80	43	0	114	193	146	225	8.13e-16	79.3
MsaG010521	AT3G16857.2	46.250	80	43	0	114	193	216	295	8.77e-16	79.3
MsaG010521	AT3G16857.1	46.250	80	43	0	114	193	216	295	1.11e-15	79.3
MsaG010521	AT2G01760.1	54.688	64	29	0	130	193	195	258	1.15e-15	78.2
MsaG010521	AT2G01760.2	54.688	64	29	0	130	193	223	286	1.33e-15	78.2
MsaG010521	AT3G10760.1	51.667	60	29	0	134	193	104	163	1.99e-15	77.0
MsaG010521	AT5G05090.1	51.667	60	29	0	134	193	80	139	2.48e-15	75.9
MsaG010521	AT2G25180.1	41.860	86	50	0	133	218	193	278	3.21e-15	77.8
MsaG010521	AT3G46640.2	32.168	143	83	3	71	206	80	215	3.42e-15	76.3
MsaG010521	AT3G46640.1	32.168	143	83	3	71	206	80	215	3.42e-15	76.3
MsaG010521	AT3G46640.3	32.168	143	83	3	71	206	80	215	7.81e-15	75.1
MsaG010521	AT2G40970.1	50.877	57	28	0	137	193	107	163	4.65e-14	71.6
MsaG010521	AT5G07210.2	49.296	71	32	1	134	204	221	287	5.37e-14	73.9
MsaG010521	AT5G07210.1	49.296	71	32	1	134	204	229	295	5.71e-14	73.9
MsaG010521	AT1G68670.1	36.508	126	68	4	112	235	193	308	1.19e-12	68.9
MsaG010521	AT1G13300.1	39.796	98	55	3	95	191	144	238	2.34e-12	67.8
MsaG010521	AT4G28610.1	46.377	69	36	1	123	190	213	281	2.62e-12	68.2
MsaG010521	AT3G04030.1	55.556	54	23	1	135	187	45	98	5.38e-12	67.0
MsaG010521	AT3G04030.3	55.556	54	23	1	135	187	45	98	6.19e-12	67.0
MsaG010521	AT2G03500.1	47.887	71	32	2	122	191	224	290	6.26e-12	67.0
MsaG010521	AT2G27070.1	49.180	61	31	0	134	194	224	284	6.86e-12	67.4
MsaG010521	AT5G18240.2	57.407	54	22	1	135	187	45	98	7.14e-12	66.6
MsaG010521	AT5G18240.3	57.407	54	22	1	135	187	45	98	7.14e-12	66.6
MsaG010521	AT5G18240.5	57.407	54	22	1	135	187	45	98	7.86e-12	66.6
MsaG010521	AT5G18240.1	57.407	54	22	1	135	187	45	98	7.91e-12	66.6
MsaG010521	AT5G18240.4	57.407	54	22	1	135	187	45	98	7.91e-12	66.6
MsaG010521	AT3G62670.1	42.353	85	44	2	112	191	188	272	8.83e-12	66.6
MsaG010521	AT1G25550.1	44.118	68	37	1	125	191	199	266	2.74e-11	64.7
MsaG010521	AT1G67710.3	53.448	58	26	1	137	193	121	178	3.05e-11	65.1
MsaG010521	AT1G67710.2	53.448	58	26	1	137	193	130	187	3.13e-11	65.1
MsaG010521	AT1G67710.1	53.448	58	26	1	137	193	195	252	4.08e-11	64.7
MsaG010521	AT2G01060.1	49.180	61	29	2	128	187	9	68	4.36e-11	63.5
MsaG010521	AT3G04030.2	50.943	53	26	0	135	187	45	97	8.39e-11	63.5

Find 121 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGCTGTACCTTCAAGAATTT+TGG	0.101691	2:+74320090	MsaT010521.1:CDS
ACGAATCTTCTGTGTAATTC+TGG	0.180500	2:-74320037	None:intergenic
TCTTTCTGAAGGGAACTTAT+TGG	0.187055	2:+74318702	MsaT010521.1:CDS
CTTCAAGTGCTGGAGCTTTA+AGG	0.188281	2:-74322394	None:intergenic
GCACAAGAGGGTGGAATATT+TGG	0.198256	2:-74322449	None:intergenic
GTAGTTTCTTCTTCAGATTC+TGG	0.217213	2:+74318936	MsaT010521.1:CDS
CTCACCAGCCACAGGCTAAC+TGG	0.234268	2:+74320719	MsaT010521.1:CDS
GAGAATTCAGCAAGCATTTC+CGG	0.247019	2:-74318804	None:intergenic
AATTCTCCTCCATTTCTCTT+TGG	0.309622	2:-74318651	None:intergenic
GTTCCTGCAGTTGGTGCATT+TGG	0.315113	2:-74321479	None:intergenic
AAAGAGATATTGTGAATCAT+TGG	0.319597	2:+74320578	MsaT010521.1:CDS
ATACATGTAAAGGTCTAAAA+TGG	0.320147	2:-74320642	None:intergenic
CCAAGAGGCAATGGTAAATA+TGG	0.325980	2:-74322371	None:intergenic
ATTTGGCTCTCCAACCGTTC+CGG	0.346150	2:+74321748	MsaT010521.1:CDS
GCGACAACACGGGATCTAAT+TGG	0.361705	2:-74321796	None:intergenic
CTTCCTTTCTCACCTTCCTT+AGG	0.364182	2:-74319020	None:intergenic
TTTGGCTCTCCAACCGTTCC+GGG	0.371933	2:+74321749	MsaT010521.1:CDS
TACTATAAAATGCAGAGATT+TGG	0.372430	2:+74321731	MsaT010521.1:intron
CGAATCTTCTGTGTAATTCT+GGG	0.380572	2:-74320036	None:intergenic
GGCTGGTGAGGCGAATATTT+AGG	0.390086	2:-74320706	None:intergenic
GCATGGGGTGGTGGAATGCC+CGG	0.416738	2:-74321767	None:intergenic
GGAGGTGGAGCCGGCCGCGC+AGG	0.417257	2:-74320745	None:intergenic
TTCTCACCTTCCTTAGGCAA+TGG	0.418890	2:-74319014	None:intergenic
ATAATTTCCAAAATTCTTGA+AGG	0.422640	2:-74320097	None:intergenic
TGGTACATGGCATGGGGTGG+TGG	0.423225	2:-74321776	None:intergenic
CCAGCACTTGAAGGTGTAAT+GGG	0.424238	2:+74322404	MsaT010521.1:CDS
TTTGGAACAAATAGAGGAGT+TGG	0.424569	2:+74320550	MsaT010521.1:CDS
AGATGAAAGCCAAAGAGAAA+TGG	0.427037	2:+74318642	MsaT010521.1:CDS
CCATATTTACCATTGCCTCT+TGG	0.445286	2:+74322371	MsaT010521.1:CDS
AGTCAAAGGAGGCAATTGTT+TGG	0.445411	2:+74320532	MsaT010521.1:CDS
AAGAGATATTGTGAATCATT+GGG	0.445666	2:+74320579	MsaT010521.1:CDS
CCTTCCTTAGGCAATGGATT+CGG	0.447175	2:-74319008	None:intergenic
TCCAGCACTTGAAGGTGTAA+TGG	0.450202	2:+74322403	MsaT010521.1:CDS
GAAGGTGGCTGGCGATGTTA+TGG	0.452271	2:-74320141	None:intergenic
AGAGCAGCTAGGTGTGGATA+AGG	0.452338	2:+74320069	MsaT010521.1:CDS
CAATTGTTTGGAACAAATAG+AGG	0.452627	2:+74320544	MsaT010521.1:CDS
ATCTAATTGGTACATGGCAT+GGG	0.454562	2:-74321783	None:intergenic
CCCATTACACCTTCAAGTGC+TGG	0.466502	2:-74322404	None:intergenic
CTTAAAGCTCCAGCACTTGA+AGG	0.470221	2:+74322395	MsaT010521.1:CDS
GTGCCCAGTTAGCCTGTGGC+TGG	0.471269	2:-74320723	None:intergenic
CAACGACGGAGATGTGTTAC+CGG	0.474780	2:+74318768	MsaT010521.1:CDS
ACCGTTGTTGTCAGAGGCTG+TGG	0.475841	2:-74321512	None:intergenic
GTTGTGTGAATTAGGTGGAT+TGG	0.480791	2:+74320011	MsaT010521.1:intron
AAGCAGCAAGCTGGAGTCAA+AGG	0.486273	2:+74320518	MsaT010521.1:CDS
GGTGGAATGCCCGGAACGGT+TGG	0.487870	2:-74321758	None:intergenic
TAACTGGGCACCTGCGCGGC+CGG	0.491370	2:+74320735	MsaT010521.1:CDS
CGCTTCGTATTGGCATCAAC+GGG	0.494965	2:+74320771	MsaT010521.1:CDS
TTCCGGTCCATCTCAAGATC+CGG	0.498896	2:-74318787	None:intergenic
TGGCGATGTTATGGCGGGTG+AGG	0.501153	2:-74320132	None:intergenic
TGCATAAACGACTGATCCAC+GGG	0.503874	2:-74320676	None:intergenic
TCATCTCTTATGCTACTCAA+TGG	0.503989	2:-74318625	None:intergenic
AATATATACTTGAAGGTGGC+TGG	0.504816	2:-74320152	None:intergenic
GTGAAGCTGAAGCAGCAAGC+TGG	0.505371	2:+74320509	MsaT010521.1:CDS
CATTGGGTTGCACCAACCAT+GGG	0.506502	2:+74320595	MsaT010521.1:CDS
GACTTTGCTGATCTTTCTGA+AGG	0.507511	2:+74318691	MsaT010521.1:CDS
TGGTGTACTGGTGGCATGGG+AGG	0.508769	2:-74320622	None:intergenic
CACGGGATCTAATTGGTACA+TGG	0.510466	2:-74321789	None:intergenic
CAATCAAAGAATAACCCTCA+TGG	0.515207	2:+74319056	MsaT010521.1:CDS
TTGCCTAAGGAAGGTGAGAA+AGG	0.515531	2:+74319017	MsaT010521.1:CDS
TGATGCCAATACGAAGCGTT+AGG	0.516711	2:-74320766	None:intergenic
CTCTCCTGTTCAAGCACAAG+AGG	0.517323	2:-74322462	None:intergenic
TCACCAGCCACAGGCTAACT+GGG	0.518098	2:+74320720	MsaT010521.1:CDS
CGATTCCTCACCGCTGCTGA+GGG	0.520384	2:-74318826	None:intergenic
CACCTCCTAACGCTTCGTAT+TGG	0.524846	2:+74320761	MsaT010521.1:CDS
AGATTCTGGTTCGAGTCGTG+TGG	0.530001	2:+74318950	MsaT010521.1:CDS
TCATTGGGTTGCACCAACCA+TGG	0.531353	2:+74320594	MsaT010521.1:CDS
TACCGGATCTTGAGATGGAC+CGG	0.531865	2:+74318785	MsaT010521.1:CDS
GATCTAATTGGTACATGGCA+TGG	0.535204	2:-74321784	None:intergenic
GGAACAAATAGAGGAGTTGG+AGG	0.536832	2:+74320553	MsaT010521.1:CDS
GAAGCGTTAGGAGGTGGAGC+CGG	0.546304	2:-74320754	None:intergenic
TTCTTCGTATGCTTCAACGA+CGG	0.547987	2:+74318754	MsaT010521.1:CDS
GTGGCTGGCGATGTTATGGC+GGG	0.549108	2:-74320137	None:intergenic
ATGGGAGGGAAACCCATGGT+TGG	0.554944	2:-74320607	None:intergenic
AAAGGTCTAAAATGGTGTAC+TGG	0.559020	2:-74320634	None:intergenic
AAATGGTGTACTGGTGGCAT+GGG	0.560870	2:-74320625	None:intergenic
GCTTTAAGGCCAAGAGGCAA+TGG	0.562818	2:-74322380	None:intergenic
AATCAAAGAATAACCCTCAT+GGG	0.562864	2:+74319057	MsaT010521.1:CDS
CAATACGAAGCGTTAGGAGG+TGG	0.565122	2:-74320760	None:intergenic
GGTGGCTGGCGATGTTATGG+CGG	0.567885	2:-74320138	None:intergenic
GGTGTACTGGTGGCATGGGA+GGG	0.568499	2:-74320621	None:intergenic
GCTCCAAATGCACCAACTGC+AGG	0.571552	2:+74321476	MsaT010521.1:CDS
CCGATTCCTCACCGCTGCTG+AGG	0.572056	2:-74318827	None:intergenic
TTTAGACCTTTACATGTATG+GGG	0.574340	2:+74320646	MsaT010521.1:CDS
AAGCATGGTGTTCCTGCAGT+TGG	0.575770	2:-74321488	None:intergenic
ATGCATAAACGACTGATCCA+CGG	0.576558	2:-74320677	None:intergenic
GGGTGGTGGAATGCCCGGAA+CGG	0.578855	2:-74321762	None:intergenic
ACGCTTCGTATTGGCATCAA+CGG	0.582704	2:+74320770	MsaT010521.1:CDS
AAAATGGTGTACTGGTGGCA+TGG	0.584070	2:-74320626	None:intergenic
CAGTTAGCCTGTGGCTGGTG+AGG	0.584356	2:-74320718	None:intergenic
CCGAATCCATTGCCTAAGGA+AGG	0.586652	2:+74319008	MsaT010521.1:CDS
ATCAGTCGTTTATGCATATG+TGG	0.587048	2:+74320683	MsaT010521.1:CDS
ACTTTGCTGATCTTTCTGAA+GGG	0.589658	2:+74318692	MsaT010521.1:CDS
GTCAGAGGCTGTGGAAAGCA+TGG	0.590043	2:-74321503	None:intergenic
TGAAAGCCAAAGAGAAATGG+AGG	0.591450	2:+74318645	MsaT010521.1:CDS
TGTGTTACCGGATCTTGAGA+TGG	0.596115	2:+74318780	MsaT010521.1:CDS
AGCAGTAGAGCAGCTAGGTG+TGG	0.596354	2:+74320063	MsaT010521.1:CDS
GGTCTAAAATGGTGTACTGG+TGG	0.597835	2:-74320631	None:intergenic
CCTGTTCAAGCACAAGAGGG+TGG	0.600264	2:-74322458	None:intergenic
ATATTCGCCTCACCAGCCAC+AGG	0.600558	2:+74320711	MsaT010521.1:CDS
ATAGTTACCGTTGTTGTCAG+AGG	0.601295	2:-74321518	None:intergenic
AATTGGTACATGGCATGGGG+TGG	0.606215	2:-74321779	None:intergenic
TGTGCCGAATCCATTGCCTA+AGG	0.612555	2:+74319004	MsaT010521.1:CDS
TGCCAATACGAAGCGTTAGG+AGG	0.617509	2:-74320763	None:intergenic
GCTGAATTCTCCCTCAGCAG+CGG	0.622418	2:+74318816	MsaT010521.1:CDS
GCAGGTGCCCAGTTAGCCTG+TGG	0.625491	2:-74320727	None:intergenic
TCTCCTGTTCAAGCACAAGA+GGG	0.631508	2:-74322461	None:intergenic
GAATCTTCTGTGTAATTCTG+GGG	0.631835	2:-74320035	None:intergenic
CAGCAAGCTGGAGTCAAAGG+AGG	0.634073	2:+74320521	MsaT010521.1:CDS
TCATGGGAAGAGAAAAGTGA+AGG	0.641795	2:+74319073	MsaT010521.1:CDS
TGGCATGGGAGGGAAACCCA+TGG	0.641923	2:-74320611	None:intergenic
ATGGGTGAATTACAGAAACA+AGG	0.642979	2:+74322422	MsaT010521.1:CDS
TCTAATTGGTACATGGCATG+GGG	0.646732	2:-74321782	None:intergenic
TTAGACCTTTACATGTATGG+GGG	0.649002	2:+74320647	MsaT010521.1:CDS
AATGAATATATACTTGAAGG+TGG	0.660387	2:-74320156	None:intergenic
TAAACGACTGATCCACGGGA+TGG	0.666201	2:-74320672	None:intergenic
TGCAGAAATATAGATCGCAT+AGG	0.669423	2:+74320470	MsaT010521.1:intron
GTACAAGCAGTAGAGCAGCT+AGG	0.685057	2:+74320058	MsaT010521.1:CDS
AGGCAATGGATTCGGCACAA+CGG	0.686412	2:-74319000	None:intergenic
AGGCTAACTGGGCACCTGCG+CGG	0.691087	2:+74320731	MsaT010521.1:CDS
GCTGGAGCTTTAAGGCCAAG+AGG	0.694599	2:-74322386	None:intergenic
TCCACAGCCTCTGACAACAA+CGG	0.702383	2:+74321511	MsaT010521.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	74318610	74322475	74318610	ID=MsaG010521
Chr2	mRNA	74318610	74322475	74318610	ID=MsaT010521.1;Parent=MsaG010521
Chr2	exon	74318610	74318837	74318610	ID=MsaT010521.1.exon1;Parent=MsaT010521.1
Chr2	CDS	74318610	74318837	74318610	ID=cds.MsaT010521.1;Parent=MsaT010521.1
Chr2	exon	74318912	74319094	74318912	ID=MsaT010521.1.exon2;Parent=MsaT010521.1
Chr2	CDS	74318912	74319094	74318912	ID=cds.MsaT010521.1;Parent=MsaT010521.1
Chr2	exon	74320025	74320165	74320025	ID=MsaT010521.1.exon3;Parent=MsaT010521.1
Chr2	CDS	74320025	74320165	74320025	ID=cds.MsaT010521.1;Parent=MsaT010521.1
Chr2	exon	74320475	74320792	74320475	ID=MsaT010521.1.exon4;Parent=MsaT010521.1
Chr2	CDS	74320475	74320792	74320475	ID=cds.MsaT010521.1;Parent=MsaT010521.1
Chr2	exon	74321476	74321532	74321476	ID=MsaT010521.1.exon5;Parent=MsaT010521.1
Chr2	CDS	74321476	74321532	74321476	ID=cds.MsaT010521.1;Parent=MsaT010521.1
Chr2	exon	74321746	74321808	74321746	ID=MsaT010521.1.exon6;Parent=MsaT010521.1
Chr2	CDS	74321746	74321808	74321746	ID=cds.MsaT010521.1;Parent=MsaT010521.1
Chr2	exon	74322326	74322475	74322326	ID=MsaT010521.1.exon7;Parent=MsaT010521.1
Chr2	CDS	74322326	74322475	74322326	ID=cds.MsaT010521.1;Parent=MsaT010521.1

Gene Sequence

>MsaT010521.1

ATGCTAGCAGTAGCACCATTGAGTAGCATAAGAGATGAAAGCCAAAGAGAAATGGAGGAGAATTTATCAATTGAGACGTGTGACTTTGCTGATCTTTCTGAAGGGAACTTATTGGAAAGCATCAATTTTGAATTTGATGATGATTTCTTCGTATGCTTCAACGACGGAGATGTGTTACCGGATCTTGAGATGGACCGGAAATGCTTGCTGAATTCTCCCTCAGCAGCGAGAAAATTACAAGATGAAGAGAAAGTAGTTTCTTCTTCAGATTCTGGTTCGAGTCGTGTGGAAGAGATAATTAGCAAAAGAGATGAATCCGTTGTGCCGAATCCATTGCCTAAGGAAGGTGAGAAAGGAAGAAAATCATCATCTCAATCAAAGAATAACCCTCATGGGAAGAGAAAAGTGAAGGTGGATTGGACCCCAGAATTACACAGAAGATTCGTACAAGCAGTAGAGCAGCTAGGTGTGGATAAGGCTGTACCTTCAAGAATTTTGGAAATTATGGGAATTGACTGCCTCACCCGCCATAACATCGCCAGCCACCTTCAAAAATATAGATCGCATAGGAAACATTTGTTAGCACGTGAAGCTGAAGCAGCAAGCTGGAGTCAAAGGAGGCAATTGTTTGGAACAAATAGAGGAGTTGGAGGAAAAAGAGATATTGTGAATCATTGGGTTGCACCAACCATGGGTTTCCCTCCCATGCCACCAGTACACCATTTTAGACCTTTACATGTATGGGGGCACCATCCCGTGGATCAGTCGTTTATGCATATGTGGCCTAAATATTCGCCTCACCAGCCACAGGCTAACTGGGCACCTGCGCGGCCGGCTCCACCTCCTAACGCTTCGTATTGGCATCAACGGGCTCCAAATGCACCAACTGCAGGAACACCATGCTTTCCACAGCCTCTGACAACAACGAGATTTGGCTCTCCAACCGTTCCGGGCATTCCACCACCCCATGCCATGTACCAATTAGATCCCTCAAAGGAGAGCATCGACGCAGCTATTAGTGATGTATTATCAAAACCATATTTACCATTGCCTCTTGGCCTTAAAGCTCCAGCACTTGAAGGTGTAATGGGTGAATTACAGAAACAAGGAATTCCAAATATTCCACCCTCTTGTGCTTGA

Protein sequence

>MsaT010521.1

MLAVAPLSSIRDESQREMEENLSIETCDFADLSEGNLLESINFEFDDDFFVCFNDGDVLPDLEMDRKCLLNSPSAARKLQDEEKVVSSSDSGSSRVEEIISKRDESVVPNPLPKEGEKGRKSSSQSKNNPHGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQLFGTNRGVGGKRDIVNHWVAPTMGFPPMPPVHHFRPLHVWGHHPVDQSFMHMWPKYSPHQPQANWAPARPAPPPNASYWHQRAPNAPTAGTPCFPQPLTTTRFGSPTVPGIPPPHAMYQLDPSKESIDAAISDVLSKPYLPLPLGLKAPALEGVMGELQKQGIPNIPPSCA*