AlfalfaGEDB | MsaG010571

M. sativa ssp. caerulea / MsaG010571

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010571	XP_003597150.1	91.667	120	10	0	66	185	133	252	1.47e-65	213
MsaG010571	XP_003597150.1	93.421	76	5	0	1	76	1	76	8.81e-34	132

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010571	sp\|Q8LAP8\|DOF46_ARATH	77.083	48	11	0	29	76	42	89	1.67e-20	90.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010571	tr\|G7IU51\|G7IU51_MEDTR	91.667	120	10	0	66	185	133	252	7.04e-66	213
MsaG010571	tr\|G7IU51\|G7IU51_MEDTR	93.421	76	5	0	1	76	1	76	4.21e-34	132

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TFs/TRs:

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Gene ID	Type	Classification
MsaG010571	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000117	MsaG010571	0.850762	2.625557e-60	1.460836e-57
MsaG000309	MsaG010571	0.860426	4.098168e-63	3.238943e-60
MsaG000450	MsaG010571	0.816074	1.156535e-51	2.297397e-49
MsaG000514	MsaG010571	0.817184	6.541832e-52	1.337062e-49
MsaG000547	MsaG010571	0.832424	1.723489e-55	5.349899e-53
MsaG000622	MsaG010571	0.800011	2.941223e-48	3.977835e-46
MsaG000759	MsaG010571	0.820837	9.747945e-53	2.191832e-50
MsaG000760	MsaG010571	0.877156	1.643992e-68	2.603542e-65
MsaG000828	MsaG010571	0.822344	4.389070e-53	1.027313e-50
MsaG000941	MsaG010571	0.820618	1.093639e-52	2.444927e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010571	MtrunA17_Chr2g0326001	91.667	120	10	0	66	185	133	252	1.36e-69	213
MsaG010571	MtrunA17_Chr2g0326001	93.421	76	5	0	1	76	1	76	8.11e-38	132
MsaG010571	MtrunA17_Chr4g0030051	75.000	56	14	0	17	72	18	73	8.28e-25	97.8
MsaG010571	MtrunA17_Chr1g0188851	60.274	73	25	2	8	76	7	79	2.35e-23	94.0
MsaG010571	MtrunA17_Chr3g0127201	86.364	44	6	0	29	72	16	59	1.84e-22	91.7
MsaG010571	MtrunA17_Chr8g0346551	66.667	54	16	1	23	76	9	60	1.07e-19	84.0
MsaG010571	MtrunA17_Chr3g0117601	56.522	69	27	2	11	76	29	97	2.62e-19	84.0
MsaG010571	MtrunA17_Chr4g0010151	52.857	70	20	1	7	76	62	118	6.34e-19	83.2
MsaG010571	MtrunA17_Chr4g0031411	66.667	51	17	0	22	72	57	107	3.15e-18	80.9
MsaG010571	MtrunA17_Chr2g0328021	55.385	65	28	1	8	72	31	94	1.13e-17	78.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010571	AT4G24060.1	77.083	48	11	0	29	76	42	89	1.70e-21	90.1
MsaG010571	AT1G64620.1	84.091	44	7	0	29	72	38	81	1.03e-20	88.2
MsaG010571	AT5G60200.1	64.407	59	13	1	26	76	33	91	6.09e-20	84.7
MsaG010571	AT2G46590.2	84.091	44	5	1	29	72	71	112	1.08e-19	85.5
MsaG010571	AT2G46590.1	84.091	44	5	1	29	72	59	100	1.10e-19	85.5
MsaG010571	AT3G45610.1	75.000	48	11	1	25	72	26	72	1.99e-19	83.2
MsaG010571	AT3G55370.1	64.516	62	16	2	12	72	52	108	2.12e-19	84.3
MsaG010571	AT3G55370.3	64.516	62	16	2	12	72	97	153	2.23e-19	84.7
MsaG010571	AT3G55370.2	64.516	62	16	2	12	72	52	108	2.54e-19	84.3
MsaG010571	AT3G61850.2	82.500	40	7	0	33	72	55	94	1.49e-18	81.6

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Find 43 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAATCATGTGGACAAA+TGG	0.379363	2:+75042794	MsaT010571.1:CDS
AACCATAAACCATGGATTTA+TGG	0.149923	2:+75042872	MsaT010571.1:CDS
AAGCAATCATGTGGACAAAT+GGG	0.452916	2:+75042795	MsaT010571.1:CDS
AATAATGTTCAGAATATGTA+TGG	0.460682	2:+75042942	MsaT010571.1:CDS
AATCATTCAACCATAAACCA+TGG	0.606118	2:+75042864	MsaT010571.1:CDS
AATGCAAATAACAATGCTTG+TGG	0.543604	2:+75043008	MsaT010571.1:CDS
AATGTCGAGCCAATCATCAA+TGG	0.508256	2:+75042404	MsaT010571.1:CDS
ACCTGAGGTTGTCCACAAGA+AGG	0.573402	2:-75041572	None:intergenic
AGCAAGAAATGTGCAGTGGA+AGG	0.565157	2:+75043081	MsaT010571.1:CDS
AGGCTTCAAAAGCAATCATG+TGG	0.635965	2:+75042786	MsaT010571.1:intron

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	75041566	75045245	75041566	ID=MsaG010571
Chr2	mRNA	75041566	75045245	75041566	ID=MsaT010571.1;Parent=MsaG010571
Chr2	exon	75041566	75041592	75041566	ID=MsaT010571.1.exon1;Parent=MsaT010571.1
Chr2	CDS	75041566	75041592	75041566	ID=cds.MsaT010571.1;Parent=MsaT010571.1
Chr2	exon	75042402	75042589	75042402	ID=MsaT010571.1.exon2;Parent=MsaT010571.1
Chr2	CDS	75042402	75042589	75042402	ID=cds.MsaT010571.1;Parent=MsaT010571.1
Chr2	exon	75042788	75043119	75042788	ID=MsaT010571.1.exon3;Parent=MsaT010571.1
Chr2	CDS	75042788	75043119	75042788	ID=cds.MsaT010571.1;Parent=MsaT010571.1
Chr2	exon	75045217	75045245	75045217	ID=MsaT010571.1.exon4;Parent=MsaT010571.1
Chr2	CDS	75045217	75045245	75045217	ID=cds.MsaT010571.1;Parent=MsaT010571.1

Gene Sequence

>MsaT010571.1

ATGGATCCTTCTTGTGGACAACCTCAGCAAATGTCGAGCCAATCATCAATGGAAAACATGTTAGGTTGCTCAAAAGATGAGCAAGAAAGAAAGCCAAAACCTCAACCAGAACAAGCTTTGAACTGTCCAAGATGCAACTCAACCAACACCAAATTCTGTTACTATAACAACTATAGTCTTACTCAGCCAAGATATTTCTGCAAATCTTGTAGAAGGCTTCAAAAGCAATCATGTGGACAAATGGGTTATGATGATCATGATGCTTCAAATCTAGGAAATTCAGGTATGAACAATCATTCAACCATAAACCATGGATTTATGGATGCAATTAGAAGTGGATTATTTCTTGGAAATGGACTACATTATAATAATAATGTTCAGAATATGTATGGTGTGTATGGAAATGGGGACAATGGTGAAGTAAATAGTGGTAACAATGCAAATAACAATGCTTGTGGGGTTAGTGAAGAAATGATGTTTCCCTATGATCAAGAAATTAACAATGTGAAGCAAGAAATGTGCAGTGGAAGGGAACAAATTAGTGAAAACCAAATCCAACGGAAGATTCTGGCGTGA

Protein sequence

>MsaT010571.1

MDPSCGQPQQMSSQSSMENMLGCSKDEQERKPKPQPEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKSCRRLQKQSCGQMGYDDHDASNLGNSGMNNHSTINHGFMDAIRSGLFLGNGLHYNNNVQNMYGVYGNGDNGEVNSGNNANNNACGVSEEMMFPYDQEINNVKQEMCSGREQISENQIQRKILA*