AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG010591

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG010591 MtrunA17_Chr2g0326361 94.357 319 17 1 1 319 1 318 0.0 611
MsaG010591 MtrunA17_Chr7g0263931 48.485 330 139 5 10 319 7 325 7.97e-96 286
MsaG010591 MtrunA17_Chr5g0417791 67.059 170 54 1 14 183 3 170 4.71e-83 251
MsaG010591 MtrunA17_Chr4g0042561 65.896 173 57 1 8 180 3 173 1.22e-81 248
MsaG010591 MtrunA17_Chr2g0318101 65.432 162 49 1 14 168 15 176 1.49e-79 246
MsaG010591 MtrunA17_Chr7g0252971 66.286 175 50 4 14 180 8 181 6.05e-79 244
MsaG010591 MtrunA17_Chr4g0047841 64.045 178 45 2 14 172 15 192 8.66e-79 243
MsaG010591 MtrunA17_Chr3g0124761 65.409 159 51 2 10 168 3 157 1.38e-72 226
MsaG010591 MtrunA17_Chr8g0384721 55.135 185 73 2 14 191 7 188 3.53e-70 219
MsaG010591 MtrunA17_Chr2g0318081 59.146 164 61 2 10 173 12 169 8.28e-68 216
MsaG010591 MtrunA17_Chr8g0359921 61.585 164 59 2 10 173 10 169 1.05e-66 212
MsaG010591 MtrunA17_Chr3g0130731 60.645 155 57 2 14 168 7 157 2.95e-65 207
MsaG010591 MtrunA17_Chr5g0417001 51.136 176 82 2 1 172 1 176 1.67e-59 195
MsaG010591 MtrunA17_Chr8g0361731 51.445 173 79 2 1 168 1 173 2.27e-57 190
MsaG010591 MtrunA17_Chr6g0453131 50.847 177 78 3 16 187 17 189 3.80e-55 184
MsaG010591 MtrunA17_Chr3g0139331 46.305 203 101 4 4 205 2 197 5.69e-54 179
MsaG010591 MtrunA17_Chr1g0147421 47.087 206 88 5 1 203 15 202 1.15e-53 179
MsaG010591 MtrunA17_Chr6g0481091 49.405 168 77 3 14 179 6 167 2.09e-53 175
MsaG010591 MtrunA17_Chr2g0309891 51.266 158 70 3 13 168 5 157 4.10e-53 177
MsaG010591 MtrunA17_Chr2g0316971 54.839 155 68 1 14 168 23 175 7.30e-53 177
MsaG010591 MtrunA17_Chr6g0453451 50.595 168 79 2 8 175 14 177 1.01e-52 176
MsaG010591 MtrunA17_Chr6g0484441 51.250 160 70 2 14 173 5 156 4.35e-52 174
MsaG010591 MtrunA17_Chr7g0214071 54.605 152 60 2 14 165 15 157 7.82e-52 171
MsaG010591 MtrunA17_Chr4g0060931 50.303 165 68 3 14 173 17 172 1.55e-50 171
MsaG010591 MtrunA17_Chr4g0076731 53.333 150 63 3 16 165 56 198 3.42e-50 172
MsaG010591 MtrunA17_Chr3g0091921 50.303 165 78 3 9 173 11 171 4.73e-50 168
MsaG010591 MtrunA17_Chr5g0433781 53.416 161 61 4 13 168 5 156 5.25e-50 176
MsaG010591 MtrunA17_Chr1g0183741 45.455 176 88 2 13 188 9 176 7.51e-50 167
MsaG010591 MtrunA17_Chr2g0309331 45.550 191 92 4 13 200 9 190 1.03e-49 168
MsaG010591 MtrunA17_Chr7g0253011 50.000 164 78 3 7 168 10 171 3.86e-49 168
MsaG010591 MtrunA17_Chr5g0442771 48.023 177 86 3 16 186 20 196 4.57e-49 166
MsaG010591 MtrunA17_Chr4g0018391 51.572 159 62 4 15 168 8 156 1.16e-48 166
MsaG010591 MtrunA17_Chr4g0054791 46.369 179 87 4 13 187 5 178 2.35e-48 164
MsaG010591 MtrunA17_Chr3g0109821 51.899 158 69 4 13 168 5 157 3.11e-48 171
MsaG010591 MtrunA17_Chr8g0385991 51.948 154 69 3 14 165 14 164 5.71e-48 160
MsaG010591 MtrunA17_Chr4g0017921 49.123 171 71 4 8 175 2 159 1.46e-47 163
MsaG010591 MtrunA17_Chr8g0346001 47.337 169 79 3 15 175 16 182 3.13e-47 164
MsaG010591 MtrunA17_Chr6g0461661 47.337 169 83 3 1 165 1 167 4.41e-47 162
MsaG010591 MtrunA17_Chr7g0261411 49.020 153 70 2 13 165 9 153 6.93e-47 159
MsaG010591 MtrunA17_Chr8g0372121 45.349 172 83 3 15 183 7 170 8.25e-47 160
MsaG010591 MtrunA17_Chr4g0038751 39.056 233 120 4 16 239 17 236 1.36e-46 159
MsaG010591 MtrunA17_Chr5g0405211 49.045 157 69 3 15 168 9 157 1.61e-46 160
MsaG010591 MtrunA17_Chr2g0311651 46.243 173 82 5 16 177 24 196 1.74e-46 159
MsaG010591 MtrunA17_Chr2g0311661 45.833 168 81 4 16 173 23 190 2.98e-46 158
MsaG010591 MtrunA17_Chr5g0398971 48.428 159 69 4 15 168 8 158 8.00e-46 158
MsaG010591 MtrunA17_Chr4g0056541 44.767 172 83 4 15 182 8 171 8.85e-46 159
MsaG010591 MtrunA17_Chr1g0200561 48.408 157 70 3 15 168 20 168 9.52e-46 158
MsaG010591 MtrunA17_Chr5g0400461 45.402 174 80 4 13 179 5 170 3.30e-45 156
MsaG010591 MtrunA17_Chr3g0144271 54.478 134 60 1 9 141 18 151 4.34e-45 158
MsaG010591 MtrunA17_Chr2g0312321 47.368 152 73 3 14 165 11 155 1.30e-44 154
MsaG010591 MtrunA17_Chr3g0131911 50.314 159 73 4 14 168 14 170 3.41e-43 149
MsaG010591 MtrunA17_Chr1g0201021 52.344 128 57 2 16 141 21 146 8.13e-42 152
MsaG010591 MtrunA17_Chr7g0217711 52.344 128 59 1 14 141 19 144 1.37e-41 142
MsaG010591 MtrunA17_Chr7g0217721 42.775 173 86 2 14 175 19 189 1.86e-41 147
MsaG010591 MtrunA17_Chr3g0130101 45.806 155 76 4 16 168 9 157 2.64e-41 147
MsaG010591 MtrunA17_Chr1g0197351 46.875 160 79 3 13 168 41 198 3.87e-41 149
MsaG010591 MtrunA17_Chr5g0428991 45.810 179 84 6 14 186 25 196 8.90e-41 150
MsaG010591 MtrunA17_Chr3g0128151 46.111 180 87 5 13 189 21 193 1.33e-39 146
MsaG010591 MtrunA17_Chr1g0197361 40.642 187 90 6 16 189 10 188 3.40e-39 145
MsaG010591 MtrunA17_Chr8g0364791 43.871 155 79 4 16 168 8 156 2.37e-38 141
MsaG010591 MtrunA17_Chr3g0128111 41.989 181 89 4 17 191 45 215 3.34e-37 133
MsaG010591 MtrunA17_Chr3g0092671 39.247 186 94 5 16 189 7 185 3.76e-37 139
MsaG010591 MtrunA17_Chr8g0384201 35.484 217 124 5 16 222 8 218 6.09e-37 138
MsaG010591 MtrunA17_Chr8g0345671 40.761 184 92 6 11 181 8 187 4.25e-36 134
MsaG010591 MtrunA17_Chr4g0026141 45.283 159 76 5 14 165 5 159 1.06e-35 129
MsaG010591 MtrunA17_Chr7g0266701 36.318 201 117 5 14 207 4 200 4.07e-34 125
MsaG010591 MtrunA17_Chr4g0050701 37.580 157 88 2 14 168 11 159 8.60e-34 122
MsaG010591 MtrunA17_Chr8g0345691 42.857 154 75 5 15 165 13 156 8.90e-32 122
MsaG010591 MtrunA17_Chr2g0321631 42.138 159 80 5 15 165 5 159 9.70e-32 119
MsaG010591 MtrunA17_Chr2g0321741 41.558 154 71 5 35 182 13 153 1.17e-30 118
MsaG010591 MtrunA17_Chr8g0345711 38.509 161 88 5 13 163 11 170 2.61e-30 113
MsaG010591 MtrunA17_Chr8g0384351 37.654 162 75 5 7 168 3 138 1.02e-27 106
MsaG010591 MtrunA17_Chr8g0345731 40.152 132 74 3 14 140 24 155 4.09e-27 104
MsaG010591 MtrunA17_Chr3g0113001 51.485 101 46 2 65 165 16 113 1.48e-26 106
MsaG010591 MtrunA17_Chr8g0345721 35.928 167 69 4 13 142 29 194 5.38e-26 102
MsaG010591 MtrunA17_Chr8g0345741 35.185 162 88 4 25 183 2 149 8.43e-25 97.8
MsaG010591 MtrunA17_Chr7g0243371 56.000 75 33 0 67 141 17 91 1.17e-23 93.6
MsaG010591 MtrunA17_Chr3g0113031 50.562 89 42 1 77 165 3 89 3.78e-22 94.0
MsaG010591 MtrunA17_Chr3g0130321 35.976 164 81 8 14 165 7 158 5.26e-22 92.0
MsaG010591 MtrunA17_Chr8g0345701 34.228 149 78 5 9 140 2 147 6.06e-21 88.2
MsaG010591 MtrunA17_Chr7g0251651 27.711 166 112 5 8 169 12 173 1.38e-15 73.9
MsaG010591 MtrunA17_Chr7g0251661 31.250 128 82 4 14 139 10 133 1.44e-15 73.2
MsaG010591 MtrunA17_Chr1g0168571 31.111 180 99 9 22 188 13 180 1.30e-11 64.7
MsaG010591 MtrunA17_Chr3g0113011 55.319 47 21 0 14 60 19 65 1.40e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG010591 AT1G69490.1 67.059 170 54 1 10 179 5 172 5.40e-82 249
MsaG010591 AT1G61110.1 67.442 172 39 3 14 173 16 182 3.25e-80 247
MsaG010591 AT3G15510.1 61.988 171 58 1 18 181 21 191 6.58e-77 239
MsaG010591 AT1G77450.1 64.596 161 53 2 8 168 4 160 5.49e-74 228
MsaG010591 AT3G04070.2 57.368 190 66 3 13 187 9 198 2.08e-73 230
MsaG010591 AT3G04070.1 54.854 206 62 4 13 187 9 214 9.55e-73 229
MsaG010591 AT1G01720.1 67.097 155 48 1 14 168 7 158 1.18e-72 226
MsaG010591 AT5G08790.1 58.333 180 71 2 9 187 2 178 4.35e-70 219
MsaG010591 AT1G52880.1 68.323 161 45 3 18 172 21 181 1.42e-69 219
MsaG010591 AT5G63790.1 59.218 179 66 4 9 184 45 219 6.40e-69 218
MsaG010591 AT5G63790.2 59.218 179 66 4 9 184 55 229 9.88e-69 217
MsaG010591 AT3G15500.1 58.580 169 64 2 10 178 10 172 1.23e-67 214
MsaG010591 AT4G27410.2 57.927 164 63 2 10 173 10 167 2.80e-67 213
MsaG010591 AT1G52890.1 57.803 173 67 2 1 173 1 167 4.43e-67 213
MsaG010591 AT4G27410.3 52.486 181 63 3 10 173 10 184 6.36e-63 202
MsaG010591 AT2G24430.2 51.176 170 78 2 4 173 6 170 6.79e-56 184
MsaG010591 AT2G24430.1 51.176 170 78 2 4 173 6 170 6.79e-56 184
MsaG010591 AT1G26870.1 53.165 158 69 1 16 168 18 175 5.53e-55 184
MsaG010591 AT5G39820.1 42.180 211 105 2 16 209 22 232 6.89e-55 182
MsaG010591 AT1G76420.1 50.920 163 75 1 14 176 22 179 1.33e-54 181
MsaG010591 AT5G53950.1 52.761 163 74 2 6 168 10 169 1.22e-53 180
MsaG010591 AT5G07680.2 52.469 162 73 3 14 175 3 160 2.34e-53 177
MsaG010591 AT5G07680.1 52.469 162 73 3 14 175 17 174 2.38e-53 178
MsaG010591 AT3G04060.1 48.864 176 87 3 5 180 11 183 3.22e-52 175
MsaG010591 AT3G15170.1 53.642 151 68 1 15 165 21 169 5.23e-52 174
MsaG010591 AT5G13180.1 54.605 152 61 3 14 165 14 157 6.19e-52 172
MsaG010591 AT5G39610.1 51.875 160 63 3 14 168 20 170 7.50e-52 172
MsaG010591 AT5G61430.1 51.235 162 75 3 14 175 16 173 7.90e-52 174
MsaG010591 AT3G17730.1 51.479 169 73 5 14 179 6 168 1.24e-51 171
MsaG010591 AT1G65910.1 50.588 170 76 4 13 180 5 168 2.37e-51 179
MsaG010591 AT2G02450.1 54.667 150 61 3 16 165 53 195 2.72e-51 174
MsaG010591 AT2G02450.2 54.667 150 61 3 16 165 53 195 2.74e-51 175
MsaG010591 AT3G03200.1 51.875 160 66 4 13 168 5 157 6.02e-51 176
MsaG010591 AT3G18400.1 50.000 160 73 2 14 173 5 157 1.11e-50 171
MsaG010591 AT5G18270.1 47.826 184 82 4 6 189 13 182 1.88e-50 171
MsaG010591 AT2G43000.1 48.428 159 77 2 16 174 20 173 2.96e-50 168
MsaG010591 AT2G33480.1 52.174 161 68 3 14 174 15 166 3.29e-50 168
MsaG010591 AT5G18270.2 47.826 184 82 4 6 189 13 182 4.14e-50 169
MsaG010591 AT3G29035.1 59.375 128 50 1 14 141 24 149 4.62e-50 169
MsaG010591 AT2G33480.2 52.174 161 66 3 14 174 15 164 4.93e-50 167
MsaG010591 AT5G46590.1 50.562 178 77 5 14 187 6 176 5.41e-50 168
MsaG010591 AT5G17260.1 51.250 160 67 4 13 168 5 157 7.02e-50 172
MsaG010591 AT1G79580.3 50.314 159 68 3 13 168 16 166 1.23e-48 167
MsaG010591 AT1G79580.5 50.314 159 68 3 13 168 16 166 1.23e-48 167
MsaG010591 AT1G79580.4 50.314 159 68 3 13 168 16 166 1.23e-48 167
MsaG010591 AT1G79580.2 50.314 159 68 3 13 168 16 166 1.23e-48 167
MsaG010591 AT1G79580.1 50.314 159 68 3 13 168 16 166 1.23e-48 167
MsaG010591 AT4G10350.1 51.235 162 70 3 7 165 2 157 1.56e-48 166
MsaG010591 AT2G17040.1 42.654 211 101 5 16 220 8 204 2.42e-48 163
MsaG010591 AT4G17980.1 50.920 163 66 5 13 168 5 160 7.06e-48 162
MsaG010591 AT1G33280.1 50.292 171 69 4 8 175 2 159 7.12e-48 163
MsaG010591 AT4G17980.2 50.920 163 66 5 13 168 5 160 8.46e-48 162
MsaG010591 AT1G71930.2 48.428 159 71 3 13 168 8 158 1.26e-47 163
MsaG010591 AT1G71930.1 48.428 159 71 3 13 168 8 158 1.26e-47 163
MsaG010591 AT1G56010.2 42.778 180 99 3 14 192 19 195 9.47e-47 160
MsaG010591 AT4G28530.1 46.857 175 69 3 14 172 10 176 1.74e-46 160
MsaG010591 AT4G36160.2 48.428 159 71 3 13 168 13 163 2.14e-46 161
MsaG010591 AT4G36160.1 48.428 159 71 3 13 168 9 159 2.20e-46 161
MsaG010591 AT4G36160.3 48.428 159 71 3 13 168 9 159 2.20e-46 161
MsaG010591 AT5G46590.2 54.815 135 58 2 14 146 6 139 2.88e-46 158
MsaG010591 AT2G18060.3 47.799 159 72 3 13 168 8 158 3.91e-46 160
MsaG010591 AT2G18060.1 47.799 159 72 3 13 168 8 158 3.91e-46 160
MsaG010591 AT3G10480.1 47.826 161 77 3 10 168 23 178 4.19e-46 162
MsaG010591 AT1G12260.2 49.045 157 69 3 15 168 8 156 4.46e-46 159
MsaG010591 AT1G12260.1 49.045 157 69 3 15 168 8 156 7.73e-46 160
MsaG010591 AT3G10480.2 48.447 161 75 4 10 168 23 177 1.13e-45 160
MsaG010591 AT5G66300.1 48.428 159 72 3 13 168 11 162 1.50e-45 156
MsaG010591 AT1G54330.1 48.101 158 71 3 13 168 5 153 2.08e-45 156
MsaG010591 AT1G32770.1 47.590 166 75 5 15 170 17 180 2.35e-45 158
MsaG010591 AT5G62380.2 46.341 164 77 3 14 174 7 162 3.80e-45 157
MsaG010591 AT5G62380.1 46.341 164 77 3 14 174 7 162 3.80e-45 157
MsaG010591 AT3G10490.1 46.835 158 77 3 13 168 26 178 4.63e-45 154
MsaG010591 AT1G62700.1 44.571 175 84 4 15 184 8 174 5.18e-45 158
MsaG010591 AT1G62700.2 44.571 175 84 4 15 184 8 174 5.18e-45 158
MsaG010591 AT3G12977.1 41.618 173 96 2 14 186 18 185 1.63e-44 153
MsaG010591 AT1G32510.1 48.447 161 69 4 14 165 6 161 1.68e-44 154
MsaG010591 AT2G46770.1 43.333 180 84 5 15 182 17 190 2.69e-44 155
MsaG010591 AT3G10490.2 46.835 158 77 3 13 168 26 178 1.47e-43 155
MsaG010591 AT3G10500.1 46.341 164 80 3 7 168 2 159 4.50e-43 155
MsaG010591 AT1G33060.2 50.633 158 70 4 13 168 23 174 6.64e-43 156
MsaG010591 AT1G33060.1 50.633 158 70 4 13 168 23 174 7.61e-43 156
MsaG010591 AT3G10480.3 40.722 194 75 4 10 168 23 211 1.39e-42 154
MsaG010591 AT4G35580.3 50.909 165 71 5 7 168 2 159 3.45e-42 153
MsaG010591 AT4G35580.2 54.412 136 58 2 7 140 2 135 3.83e-42 153
MsaG010591 AT4G35580.1 54.412 136 58 2 7 140 2 135 4.54e-42 152
MsaG010591 AT1G34180.3 52.344 128 57 2 16 141 18 143 7.36e-42 150
MsaG010591 AT3G61910.1 42.857 175 82 4 15 175 12 182 1.15e-41 147
MsaG010591 AT1G34180.1 52.344 128 57 2 16 141 18 143 3.71e-41 150
MsaG010591 AT3G12910.1 45.349 172 76 5 16 173 23 190 5.57e-41 145
MsaG010591 AT1G34190.1 50.781 128 59 2 16 141 18 143 8.19e-41 150
MsaG010591 AT5G04410.1 44.512 164 83 3 7 168 2 159 8.54e-41 150
MsaG010591 AT5G24590.2 51.880 133 61 2 13 143 12 143 6.24e-40 145
MsaG010591 AT5G09330.5 42.581 155 81 3 16 168 8 156 8.17e-39 143
MsaG010591 AT5G09330.2 42.581 155 81 3 16 168 8 156 8.17e-39 143
MsaG010591 AT5G09330.4 42.581 155 81 3 16 168 8 156 8.17e-39 143
MsaG010591 AT5G09330.3 42.581 155 81 3 16 168 8 156 8.17e-39 143
MsaG010591 AT5G09330.1 42.581 155 81 3 16 168 8 156 8.17e-39 143
MsaG010591 AT3G44290.2 36.548 197 98 6 16 210 16 187 8.77e-39 137
MsaG010591 AT1G34180.4 47.857 140 57 3 16 141 18 155 9.77e-39 142
MsaG010591 AT1G34180.2 47.857 140 57 3 16 141 18 155 3.69e-38 142
MsaG010591 AT2G27300.1 33.761 234 133 6 16 237 16 239 7.93e-38 137
MsaG010591 AT3G44290.1 36.548 197 98 6 16 210 16 187 1.07e-37 137
MsaG010591 AT3G49530.2 48.120 133 66 2 13 143 12 143 2.13e-37 138
MsaG010591 AT3G49530.1 49.231 130 63 2 13 140 12 140 2.76e-37 139
MsaG010591 AT5G22290.1 43.210 162 78 4 13 172 20 169 3.61e-37 136
MsaG010591 AT5G64060.1 40.127 157 86 3 14 168 6 156 1.07e-35 132
MsaG010591 AT1G32870.2 45.181 166 83 4 8 171 4 163 8.15e-35 133
MsaG010591 AT5G04395.1 41.611 149 73 2 8 142 22 170 8.27e-35 125
MsaG010591 AT1G32870.1 44.910 167 84 4 8 172 4 164 8.82e-35 133
MsaG010591 AT1G32870.3 44.910 167 84 4 8 172 40 200 1.02e-34 133
MsaG010591 AT5G64530.1 36.158 177 91 3 14 180 3 167 1.28e-32 120
MsaG010591 AT5G22380.1 39.181 171 95 4 17 181 8 175 1.96e-32 120
MsaG010591 AT5G64530.2 43.077 130 62 2 14 143 3 120 3.70e-32 117
MsaG010591 AT4G28530.2 38.857 175 46 4 14 172 10 139 3.65e-30 117
MsaG010591 AT3G44350.2 39.247 186 92 8 17 192 8 182 4.35e-30 114
MsaG010591 AT3G44350.1 43.165 139 69 4 17 148 8 143 1.08e-29 111
MsaG010591 AT5G61430.2 49.550 111 52 3 65 175 4 110 2.23e-29 114
MsaG010591 AT1G56010.1 43.077 130 71 2 63 192 2 128 2.38e-29 113
MsaG010591 AT4G01550.1 39.548 177 93 6 17 189 7 173 1.39e-28 115
MsaG010591 AT4G10350.2 54.545 99 39 2 67 165 18 110 7.42e-28 110
MsaG010591 AT3G12977.2 43.802 121 63 2 66 186 17 132 7.84e-28 108
MsaG010591 AT2G33480.3 50.926 108 47 2 67 174 8 109 1.29e-27 107
MsaG010591 AT4G01520.1 39.024 164 86 6 15 173 5 159 1.36e-27 109
MsaG010591 AT4G01540.3 38.889 162 85 6 17 173 7 159 2.00e-26 108
MsaG010591 AT4G01540.4 38.889 162 85 6 17 173 7 159 2.53e-26 107
MsaG010591 AT4G01540.2 38.889 162 85 6 17 173 7 159 2.57e-26 108
MsaG010591 AT4G01540.1 38.889 162 85 6 17 173 7 159 2.77e-26 108
MsaG010591 AT3G04420.2 36.478 159 86 4 15 169 4 151 4.55e-26 105
MsaG010591 AT3G04420.1 36.478 159 86 4 15 169 4 151 1.10e-25 105
MsaG010591 AT1G02230.1 38.168 131 73 4 15 140 4 131 7.28e-23 97.8
MsaG010591 AT1G01010.1 34.595 185 94 7 17 188 6 176 6.22e-22 95.9
MsaG010591 AT2G43000.2 45.455 99 49 2 76 174 2 95 2.24e-21 90.5
MsaG010591 AT5G14000.2 37.405 131 76 3 14 142 15 141 1.56e-20 87.0
MsaG010591 AT5G14000.1 37.405 131 76 3 14 142 15 141 5.25e-20 87.0
MsaG010591 AT1G02250.1 32.500 160 92 5 15 169 4 152 6.27e-20 89.4
MsaG010591 AT1G02220.1 37.692 130 72 4 15 140 4 128 8.16e-20 89.4
MsaG010591 AT3G56530.1 34.783 138 79 4 8 139 46 178 5.64e-17 80.5
MsaG010591 AT3G10490.4 47.561 82 38 2 87 168 2 78 6.29e-17 80.9
MsaG010591 AT3G10490.3 47.561 82 38 2 87 168 2 78 6.29e-17 80.9
MsaG010591 AT5G50820.1 32.117 137 79 6 14 146 17 143 2.47e-14 70.9
MsaG010591 AT3G55210.1 29.586 169 93 6 12 165 9 166 3.23e-14 72.0
MsaG010591 AT2G18060.2 45.455 77 34 2 92 168 2 70 1.36e-13 70.5
MsaG010591 AT5G22290.2 48.148 81 29 3 93 172 2 70 3.17e-13 68.6
MsaG010591 AT1G28470.1 33.562 146 76 8 13 141 76 217 8.17e-12 65.5
MsaG010591 AT3G04430.1 38.462 104 60 4 20 121 6 107 3.79e-11 62.0

Find 65 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGCACATGAAGAAATTAT+TGG 0.175721 2:+75296081 None:intergenic
TCACCCCTTGGTAGGTTTAA+TGG 0.204888 2:+75295724 None:intergenic
ATGTCGAGTTTGAGCGTTAA+TGG 0.222020 2:-75295583 MsaT010591.1:CDS
TCAAACTGTAATCCCTTCTT+TGG 0.246326 2:-75295503 MsaT010591.1:CDS
TGGAAAAGTGTAATTTGATT+TGG 0.281222 2:+75296462 None:intergenic
CCCGAAGCTGCTGTTCTATT+TGG 0.284131 2:+75296132 None:intergenic
TTGATGGAGGGACAACAAAA+TGG 0.308259 2:-75296487 MsaT010591.1:CDS
GAACAGCAGCTTCGGGATAC+TGG 0.314644 2:-75296125 MsaT010591.1:CDS
GATCGAAAGTTCACGTTTGT+AGG 0.317656 2:+75295694 None:intergenic
ACCAAATAGAACAGCAGCTT+CGG 0.326451 2:-75296133 MsaT010591.1:CDS
TTATGTCGGGTTCGAAATAA+AGG 0.361202 2:-75295802 MsaT010591.1:CDS
TTATTCCATTCGGATACTTT+CGG 0.364663 2:+75296157 None:intergenic
CCTTGGTAGGTTTAATGGTA+TGG 0.374086 2:+75295729 None:intergenic
CTAACTTCAGTTTATGAAGA+AGG 0.386642 2:-75295544 MsaT010591.1:CDS
CTTTGTTTGGTGAGGAAGAA+TGG 0.399941 2:-75296200 MsaT010591.1:CDS
CTATTTGGTCTTATTCCATT+CGG 0.402956 2:+75296147 None:intergenic
TTCGGATACTTTCGGTCTCT+CGG 0.404947 2:+75296165 None:intergenic
TCGGGATACTGGAAGGCAAC+TGG 0.417107 2:-75296114 MsaT010591.1:CDS
AGATTTGTCTAATTTGTTCT+CGG 0.421589 2:+75295393 None:intergenic
GCTATAATCGACGCTGGAAG+TGG 0.423391 2:+75296367 None:intergenic
TTATGAAGAAGGTTTCAATA+AGG 0.425370 2:-75295533 MsaT010591.1:CDS
CCAAATAGAACAGCAGCTTC+GGG 0.428897 2:-75296132 MsaT010591.1:CDS
TTATTCAGGTAGACCTCCTA+AGG 0.433041 2:-75296025 MsaT010591.1:CDS
TTTGAGTTTGAACGATTTCG+TGG 0.465187 2:+75295954 None:intergenic
GGTAGGTTTAATGGTATGGT+TGG 0.465528 2:+75295733 None:intergenic
ATCATAGCCTCTATTCTAGT+TGG 0.470052 2:-75295634 MsaT010591.1:CDS
AATGGTATGGTTGGTTCACT+AGG 0.470257 2:+75295742 None:intergenic
CAATCTGTCTTAACTCCCTT+AGG 0.472334 2:+75296009 None:intergenic
TTGAAGTAACATTCCAAAGA+AGG 0.474571 2:+75295490 None:intergenic
CTAAGGGAGTTAAGACAGAT+TGG 0.476497 2:-75296008 MsaT010591.1:CDS
GGATGACTGGGTATTATGTC+GGG 0.477294 2:-75295815 MsaT010591.1:CDS
TTGCTGATATCTTTATGTAA+AGG 0.481819 2:+75295336 None:intergenic
TCATGTGCATCAAAGCATAT+AGG 0.483990 2:-75296069 MsaT010591.1:CDS
CTCGACATGTTCTCAGTTGG+AGG 0.484459 2:+75295598 None:intergenic
TGTGCAGAGAAGTCTTTGTT+TGG 0.486062 2:-75296213 MsaT010591.1:intron
TGGATGACTGGGTATTATGT+CGG 0.492959 2:-75295816 MsaT010591.1:CDS
GATCATGAATGAGTATAGAT+TGG 0.501119 2:-75295986 MsaT010591.1:CDS
ATAGCCTCTATTCTAGTTGG+TGG 0.501858 2:-75295631 MsaT010591.1:CDS
GTAGGACGTTCTTCACCCCT+TGG 0.504800 2:+75295712 None:intergenic
ATCTCTATAAGTATAATCCA+TGG 0.526250 2:-75296336 MsaT010591.1:CDS
AAACTCGACATGTTCTCAGT+TGG 0.532407 2:+75295595 None:intergenic
AACTCCACCAACTAGAATAG+AGG 0.537358 2:+75295627 None:intergenic
TGAAGTAACATTCCAAAGAA+GGG 0.552108 2:+75295491 None:intergenic
GCATAAAATTCTTTGATGGA+GGG 0.552629 2:-75296499 None:intergenic
TGAGTTCTTCATCAGAAGGA+TGG 0.561435 2:+75296425 None:intergenic
TACTTGAAAACTTACCCGCA+TGG 0.566843 2:+75295927 None:intergenic
GACGTTCTTCACCCCTTGGT+AGG 0.587479 2:+75295716 None:intergenic
AGAGAAGTCTTTGTTTGGTG+AGG 0.597719 2:-75296208 MsaT010591.1:CDS
ACGAAATCGTTCAAACTCAA+AGG 0.602796 2:-75295952 MsaT010591.1:CDS
ATTTCAGCTATAATCGACGC+TGG 0.604840 2:+75296361 None:intergenic
AGCAGCTTCGGGATACTGGA+AGG 0.607218 2:-75296121 MsaT010591.1:CDS
TCTGTCTTAACTCCCTTAGG+AGG 0.608939 2:+75296012 None:intergenic
ACTATGAGTTCTTCATCAGA+AGG 0.609045 2:+75296421 None:intergenic
TCTCTATAAGTATAATCCAT+GGG 0.620806 2:-75296335 MsaT010591.1:CDS
CCATACCATTAAACCTACCA+AGG 0.620878 2:-75295729 MsaT010591.1:CDS
AGAGACCGAAAGTATCCGAA+TGG 0.624198 2:-75296162 MsaT010591.1:CDS
CAAACTCAAAGGTTCCATGC+GGG 0.628355 2:-75295941 MsaT010591.1:intron
TATTCAGGTAGACCTCCTAA+GGG 0.630503 2:-75296024 MsaT010591.1:CDS
GACATGTTCTCAGTTGGAGG+AGG 0.631484 2:+75295601 None:intergenic
AACATACTAGGTAACTCCCA+TGG 0.643583 2:+75296319 None:intergenic
CATACCATTAAACCTACCAA+GGG 0.657723 2:-75295728 MsaT010591.1:CDS
GAAGGATGGAATCTGAAACC+AGG 0.664271 2:+75296439 None:intergenic
GGATGGAATCTGAAACCAGG+TGG 0.688994 2:+75296442 None:intergenic
TCAAACTCAAAGGTTCCATG+CGG 0.709010 2:-75295942 MsaT010591.1:CDS
ATACCATTAAACCTACCAAG+GGG 0.762811 2:-75295727 MsaT010591.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 75295348 75296506 75295348 ID=MsaG010591
Chr2 mRNA 75295348 75296506 75295348 ID=MsaT010591.1;Parent=MsaG010591
Chr2 exon 75295348 75295839 75295348 ID=MsaT010591.1.exon3;Parent=MsaT010591.1
Chr2 CDS 75295348 75295839 75295348 ID=cds.MsaT010591.1;Parent=MsaT010591.1
Chr2 exon 75295942 75296228 75295942 ID=MsaT010591.1.exon2;Parent=MsaT010591.1
Chr2 CDS 75295942 75296228 75295942 ID=cds.MsaT010591.1;Parent=MsaT010591.1
Chr2 exon 75296326 75296506 75296326 ID=MsaT010591.1.exon1;Parent=MsaT010591.1
Chr2 CDS 75296326 75296506 75296326 ID=cds.MsaT010591.1;Parent=MsaT010591.1
Gene Sequence

>MsaT010591.1

ATGGAGGGACAACAAAATGGATCCAAATCAAATTACACTTTTCCACCTGGTTTCAGATTCCATCCTTCTGATGAAGAACTCATAGTTCATTACTTGCAAAACAAAATCAAATCGCGTCCACTTCCAGCGTCGATTATAGCTGAAATTGATCTCTATAAGTATAATCCATGGGAGTTACCTAAGAAGTCTTTGTTTGGTGAGGAAGAATGGTATTTCTTTAGTCCGAGAGACCGAAAGTATCCGAATGGAATAAGACCAAATAGAACAGCAGCTTCGGGATACTGGAAGGCAACTGGAACTGATAAGCCAATAATTTCTTCATGTGCATCAAAGCATATAGGAGTGAAGAAAGCTCTTGTGTTTTATTCAGGTAGACCTCCTAAGGGAGTTAAGACAGATTGGATCATGAATGAGTATAGATTGGTCGACACAACCACGAAATCGTTCAAACTCAAAGGTTCCATGCGGTTGGATGACTGGGTATTATGTCGGGTTCGAAATAAAGGCTATTCATCGAAGAATTTATCTGAAAATCAAGAGAATCCTAGTGAACCAACCATACCATTAAACCTACCAAGGGGTGAAGAACGTCCTACAAACGTGAACTTTCGATCTGACATTATCACAGATTATCAGTTCAAAGACTATCAGATCATAGCCTCTATTCTAGTTGGTGGAGTTATACCTCCTCCAACTGAGAACATGTCGAGTTTGAGCGTTAATGGAAGCAAATGCAACAATCTAACTTCAGTTTATGAAGAAGGTTTCAATAAGGTGAATTCTCAAACTGTAATCCCTTCTTTGGAATGTTACTTCAATCCACTAAAAAGAAAATCTAATGAGGATGATGATCAGTTTGAAAATCTCATTTCTTTTAACAGCAAGATCAACACCGAGAACAAATTAGACAAATCTCCTAGCATCGATTTTCAAAAGCTAAACGAATTTACCTTTACATAA
Protein sequence

>MsaT010591.1

MEGQQNGSKSNYTFPPGFRFHPSDEELIVHYLQNKIKSRPLPASIIAEIDLYKYNPWELPKKSLFGEEEWYFFSPRDRKYPNGIRPNRTAASGYWKATGTDKPIISSCASKHIGVKKALVFYSGRPPKGVKTDWIMNEYRLVDTTTKSFKLKGSMRLDDWVLCRVRNKGYSSKNLSENQENPSEPTIPLNLPRGEERPTNVNFRSDIITDYQFKDYQIIASILVGGVIPPPTENMSSLSVNGSKCNNLTSVYEEGFNKVNSQTVIPSLECYFNPLKRKSNEDDDQFENLISFNSKINTENKLDKSPSIDFQKLNEFTFT*