AlfalfaGEDB | MsaG010591

M. sativa ssp. caerulea / MsaG010591

KEGG: -
GO: -
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010591	QDX01706.1	95.208	313	14	1	1	313	1	312	0.0	612

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010591	sp\|O49255\|NAC29_ARATH	67.059	170	54	1	10	179	5	172	5.31e-81	249

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010591	tr\|A0A6B7JGD8\|A0A6B7JGD8_MEDSF	95.208	313	14	1	1	313	1	312	0.0	612

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TFs/TRs:

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Gene ID	Type	Classification
MsaG010591	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG010585	MsaG010591	0.871735	1.114499e-66	1.390362e-63

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010591	MtrunA17_Chr2g0326361	94.357	319	17	1	1	319	1	318	0.0	611
MsaG010591	MtrunA17_Chr7g0263931	48.485	330	139	5	10	319	7	325	7.97e-96	286
MsaG010591	MtrunA17_Chr5g0417791	67.059	170	54	1	14	183	3	170	4.71e-83	251
MsaG010591	MtrunA17_Chr4g0042561	65.896	173	57	1	8	180	3	173	1.22e-81	248
MsaG010591	MtrunA17_Chr2g0318101	65.432	162	49	1	14	168	15	176	1.49e-79	246
MsaG010591	MtrunA17_Chr7g0252971	66.286	175	50	4	14	180	8	181	6.05e-79	244
MsaG010591	MtrunA17_Chr4g0047841	64.045	178	45	2	14	172	15	192	8.66e-79	243
MsaG010591	MtrunA17_Chr3g0124761	65.409	159	51	2	10	168	3	157	1.38e-72	226
MsaG010591	MtrunA17_Chr8g0384721	55.135	185	73	2	14	191	7	188	3.53e-70	219
MsaG010591	MtrunA17_Chr2g0318081	59.146	164	61	2	10	173	12	169	8.28e-68	216

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010591	AT1G69490.1	67.059	170	54	1	10	179	5	172	5.40e-82	249
MsaG010591	AT1G61110.1	67.442	172	39	3	14	173	16	182	3.25e-80	247
MsaG010591	AT3G15510.1	61.988	171	58	1	18	181	21	191	6.58e-77	239
MsaG010591	AT1G77450.1	64.596	161	53	2	8	168	4	160	5.49e-74	228
MsaG010591	AT3G04070.2	57.368	190	66	3	13	187	9	198	2.08e-73	230
MsaG010591	AT3G04070.1	54.854	206	62	4	13	187	9	214	9.55e-73	229
MsaG010591	AT1G01720.1	67.097	155	48	1	14	168	7	158	1.18e-72	226
MsaG010591	AT5G08790.1	58.333	180	71	2	9	187	2	178	4.35e-70	219
MsaG010591	AT1G52880.1	68.323	161	45	3	18	172	21	181	1.42e-69	219
MsaG010591	AT5G63790.1	59.218	179	66	4	9	184	45	219	6.40e-69	218

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Find 65 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCGACATGTTCTCAGT+TGG	0.532407	2:+75295595	None:intergenic
AACATACTAGGTAACTCCCA+TGG	0.643583	2:+75296319	None:intergenic
AACTCCACCAACTAGAATAG+AGG	0.537358	2:+75295627	None:intergenic
AATGGTATGGTTGGTTCACT+AGG	0.470257	2:+75295742	None:intergenic
ACCAAATAGAACAGCAGCTT+CGG	0.326451	2:-75296133	MsaT010591.1:CDS
ACGAAATCGTTCAAACTCAA+AGG	0.602796	2:-75295952	MsaT010591.1:CDS
ACTATGAGTTCTTCATCAGA+AGG	0.609045	2:+75296421	None:intergenic
AGAGAAGTCTTTGTTTGGTG+AGG	0.597719	2:-75296208	MsaT010591.1:CDS
AGAGACCGAAAGTATCCGAA+TGG	0.624198	2:-75296162	MsaT010591.1:CDS
AGATTTGTCTAATTTGTTCT+CGG	0.421589	2:+75295393	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	75295348	75296506	75295348	ID=MsaG010591
Chr2	mRNA	75295348	75296506	75295348	ID=MsaT010591.1;Parent=MsaG010591
Chr2	exon	75295348	75295839	75295348	ID=MsaT010591.1.exon3;Parent=MsaT010591.1
Chr2	CDS	75295348	75295839	75295348	ID=cds.MsaT010591.1;Parent=MsaT010591.1
Chr2	exon	75295942	75296228	75295942	ID=MsaT010591.1.exon2;Parent=MsaT010591.1
Chr2	CDS	75295942	75296228	75295942	ID=cds.MsaT010591.1;Parent=MsaT010591.1
Chr2	exon	75296326	75296506	75296326	ID=MsaT010591.1.exon1;Parent=MsaT010591.1
Chr2	CDS	75296326	75296506	75296326	ID=cds.MsaT010591.1;Parent=MsaT010591.1

Gene Sequence

>MsaT010591.1

ATGGAGGGACAACAAAATGGATCCAAATCAAATTACACTTTTCCACCTGGTTTCAGATTCCATCCTTCTGATGAAGAACTCATAGTTCATTACTTGCAAAACAAAATCAAATCGCGTCCACTTCCAGCGTCGATTATAGCTGAAATTGATCTCTATAAGTATAATCCATGGGAGTTACCTAAGAAGTCTTTGTTTGGTGAGGAAGAATGGTATTTCTTTAGTCCGAGAGACCGAAAGTATCCGAATGGAATAAGACCAAATAGAACAGCAGCTTCGGGATACTGGAAGGCAACTGGAACTGATAAGCCAATAATTTCTTCATGTGCATCAAAGCATATAGGAGTGAAGAAAGCTCTTGTGTTTTATTCAGGTAGACCTCCTAAGGGAGTTAAGACAGATTGGATCATGAATGAGTATAGATTGGTCGACACAACCACGAAATCGTTCAAACTCAAAGGTTCCATGCGGTTGGATGACTGGGTATTATGTCGGGTTCGAAATAAAGGCTATTCATCGAAGAATTTATCTGAAAATCAAGAGAATCCTAGTGAACCAACCATACCATTAAACCTACCAAGGGGTGAAGAACGTCCTACAAACGTGAACTTTCGATCTGACATTATCACAGATTATCAGTTCAAAGACTATCAGATCATAGCCTCTATTCTAGTTGGTGGAGTTATACCTCCTCCAACTGAGAACATGTCGAGTTTGAGCGTTAATGGAAGCAAATGCAACAATCTAACTTCAGTTTATGAAGAAGGTTTCAATAAGGTGAATTCTCAAACTGTAATCCCTTCTTTGGAATGTTACTTCAATCCACTAAAAAGAAAATCTAATGAGGATGATGATCAGTTTGAAAATCTCATTTCTTTTAACAGCAAGATCAACACCGAGAACAAATTAGACAAATCTCCTAGCATCGATTTTCAAAAGCTAAACGAATTTACCTTTACATAA

Protein sequence

>MsaT010591.1

MEGQQNGSKSNYTFPPGFRFHPSDEELIVHYLQNKIKSRPLPASIIAEIDLYKYNPWELPKKSLFGEEEWYFFSPRDRKYPNGIRPNRTAASGYWKATGTDKPIISSCASKHIGVKKALVFYSGRPPKGVKTDWIMNEYRLVDTTTKSFKLKGSMRLDDWVLCRVRNKGYSSKNLSENQENPSEPTIPLNLPRGEERPTNVNFRSDIITDYQFKDYQIIASILVGGVIPPPTENMSSLSVNGSKCNNLTSVYEEGFNKVNSQTVIPSLECYFNPLKRKSNEDDDQFENLISFNSKINTENKLDKSPSIDFQKLNEFTFT*