AlfalfaGEDB | MsaG010622

M. sativa ssp. caerulea / MsaG010622

KEGG: K09338
GO: GO:0001067 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009799 GO:0009855 GO:0009888 GO:0009889 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010014 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065001 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010622	XP_003597252.2	98.212	839	15	0	1	839	1	839	0.0	1717

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010622	sp\|Q9SE43\|REV_ARATH	75.825	848	188	7	1	839	3	842	0.0	1332

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010622	tr\|A0A396JCR0\|A0A396JCR0_MEDTR	98.212	839	15	0	1	839	1	839	0.0	1717

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TFs/TRs:

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Gene ID	Type	Classification
MsaG010622	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000005	MsaG010622	0.851991	1.184682e-60	6.880298e-58
MsaG000023	MsaG010622	0.807534	8.195958e-50	1.318937e-47
MsaG000216	MsaG010622	0.812107	8.602941e-51	1.546793e-48
MsaG000219	MsaG010622	0.833241	1.082730e-55	3.442363e-53
MsaG000234	MsaG010622	0.830004	6.738189e-55	1.950334e-52
MsaG000364	MsaG010622	0.828812	1.308275e-54	3.659981e-52
MsaG000379	MsaG010622	0.874978	9.163348e-68	1.316427e-64
MsaG000413	MsaG010622	0.849188	7.205636e-60	3.798895e-57
MsaG000479	MsaG010622	0.846713	3.441645e-59	1.669246e-56
MsaG000520	MsaG010622	0.862635	8.732596e-64	7.513591e-61

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG010622	MtrunA17_Chr2g0326731	98.212	839	15	0	1	839	1	839	1717
MsaG010622	MtrunA17_Chr4g0028991	79.811	847	160	7	1	839	3	846	1395
MsaG010622	MtrunA17_Chr2g0292391	63.929	840	283	8	13	839	4	836	1105
MsaG010622	MtrunA17_Chr2g0331131	62.275	835	289	10	21	839	12	836	1059
MsaG010622	MtrunA17_Chr3g0140351	61.837	849	297	12	3	839	2	835	1052
MsaG010622	MtrunA17_Chr8g0340411	60.072	839	306	11	16	839	8	832	1041

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010622	AT5G60690.1	75.825	848	188	7	1	839	3	842	0.0	1332
MsaG010622	AT2G34710.1	62.818	866	278	12	3	839	2	852	0.0	1085
MsaG010622	AT1G30490.1	62.874	835	282	10	21	839	19	841	0.0	1062
MsaG010622	AT1G52150.1	61.916	835	289	14	21	839	15	836	0.0	1044
MsaG010622	AT1G52150.2	61.796	835	291	14	21	839	15	837	0.0	1043
MsaG010622	AT4G32880.1	60.143	838	306	13	17	839	9	833	0.0	1017
MsaG010622	AT1G52150.3	61.616	792	265	14	21	791	15	788	0.0	974
MsaG010622	AT5G32670.1	64.286	70	25	0	289	358	37	106	2.62e-25	104
MsaG010622	AT5G52170.2	25.203	369	218	11	24	355	61	408	4.00e-15	80.1
MsaG010622	AT5G52170.3	25.203	369	218	11	24	355	61	408	4.84e-15	79.7

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Find 229 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAGAGGCTGCAGAAGC+AGG	0.455804	2:+75597868	MsaT010622.1:CDS
AACAACTCTAGTGGCTCTAC+AGG	0.497254	2:+75601408	MsaT010622.1:CDS
AACAGCAGCAAATCGAACCT+TGG	0.587017	2:+75600738	MsaT010622.1:CDS
AACCAAACCTTGATCTGCTT+AGG	0.671065	2:-75597639	None:intergenic
AACCGCTCTCAAAAGGAAAC+TGG	0.368266	2:-75600855	None:intergenic
AACCTCGTAGACCTCATTCC+AGG	0.475028	2:-75600113	None:intergenic
AACTTCAAAATTACCCAGCA+GGG	0.589166	2:-75598184	None:intergenic
AAGACCAGATGTCAAATCCA+AGG	0.596011	2:-75600755	None:intergenic
AAGCACTTACACTAGCTCAA+TGG	0.536805	2:+75601013	MsaT010622.1:CDS
AAGTGCTTCTGGAGTGCCAG+GGG	0.637051	2:-75600998	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	75597447	75601778	75597447	ID=MsaG010622
Chr2	mRNA	75597447	75601778	75597447	ID=MsaT010622.1;Parent=MsaG010622
Chr2	exon	75597447	75597673	75597447	ID=MsaT010622.1.exon1;Parent=MsaT010622.1
Chr2	CDS	75597447	75597673	75597447	ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2	exon	75597781	75597940	75597781	ID=MsaT010622.1.exon2;Parent=MsaT010622.1
Chr2	CDS	75597781	75597940	75597781	ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2	exon	75598101	75598192	75598101	ID=MsaT010622.1.exon3;Parent=MsaT010622.1
Chr2	CDS	75598101	75598192	75598101	ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2	exon	75598288	75598378	75598288	ID=MsaT010622.1.exon4;Parent=MsaT010622.1
Chr2	CDS	75598288	75598378	75598288	ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2	exon	75598513	75598608	75598513	ID=MsaT010622.1.exon5;Parent=MsaT010622.1
Chr2	CDS	75598513	75598608	75598513	ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2	exon	75598717	75598830	75598717	ID=MsaT010622.1.exon6;Parent=MsaT010622.1
Chr2	CDS	75598717	75598830	75598717	ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2	exon	75598908	75598991	75598908	ID=MsaT010622.1.exon7;Parent=MsaT010622.1
Chr2	CDS	75598908	75598991	75598908	ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2	exon	75599081	75599236	75599081	ID=MsaT010622.1.exon8;Parent=MsaT010622.1
Chr2	CDS	75599081	75599236	75599081	ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2	exon	75599328	75599402	75599328	ID=MsaT010622.1.exon9;Parent=MsaT010622.1
Chr2	CDS	75599328	75599402	75599328	ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2	exon	75599495	75599601	75599495	ID=MsaT010622.1.exon10;Parent=MsaT010622.1
Chr2	CDS	75599495	75599601	75599495	ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2	exon	75599707	75599890	75599707	ID=MsaT010622.1.exon11;Parent=MsaT010622.1
Chr2	CDS	75599707	75599890	75599707	ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2	exon	75599999	75600187	75599999	ID=MsaT010622.1.exon12;Parent=MsaT010622.1
Chr2	CDS	75599999	75600187	75599999	ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2	exon	75600321	75600395	75600321	ID=MsaT010622.1.exon13;Parent=MsaT010622.1
Chr2	CDS	75600321	75600395	75600321	ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2	exon	75600492	75600626	75600492	ID=MsaT010622.1.exon14;Parent=MsaT010622.1
Chr2	CDS	75600492	75600626	75600492	ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2	exon	75600721	75601052	75600721	ID=MsaT010622.1.exon15;Parent=MsaT010622.1
Chr2	CDS	75600721	75601052	75600721	ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2	exon	75601146	75601251	75601146	ID=MsaT010622.1.exon16;Parent=MsaT010622.1
Chr2	CDS	75601146	75601251	75601146	ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2	exon	75601358	75601507	75601358	ID=MsaT010622.1.exon17;Parent=MsaT010622.1
Chr2	CDS	75601358	75601507	75601358	ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2	exon	75601632	75601778	75601632	ID=MsaT010622.1.exon18;Parent=MsaT010622.1
Chr2	CDS	75601632	75601778	75601632	ID=cds.MsaT010622.1;Parent=MsaT010622.1

Gene Sequence

>MsaT010622.1

ATGGCTATGGCTGTTGCACAACAACAAAGAGATAACAGCATTGAGAGACACCTTGATTCGTCTGGCAAATATGTGCGGTACACTGCTGAACAGATTGAAGCTTTGGAAAAGGTTTATGTGGAATGCCCTAAGCCTAGTTCATTGAGAAGGCAACAGCTGATTCGGGAGTGCCCGGTTTTGGCCAACATTGAGCCTAAGCAGATCAAGGTTTGGTTTCAGAATAGGAGGTGTAGGGAGAAGCAGAGAAAAGAGGCTTCTCAGCTTCAGAGTGTGAACAGGAAACTTTCTGCGATGAATAAGCTGTTGATGGAGGAAAATGAGAGGCTGCAGAAGCAGGTTTCACAGCTGGTGAATGAGAATGGGTTTATGCGCCAGCAATTACACACTACCCCAGCAGCTCCAAATGCTGACGGTAGTGGCGTTGATTCTGCGGCTGCTGCTCCTATGAATTCATTGAGAGATGCTAATAGCCCTGCTGGATTCCTATCAATTGCGGAGGAGACATTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATATTTGCCATTTCTCAAGGTGGCAACGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACTAAGATTGTGGAGATCTTAAAAGATCGCCCAACTTGGTATCGTGATTGTCGGAGTTCAGAAGTTTTCACAATGTTCCCAGCTGGAAATGGAGGAACAATTGAACTTGTTTACACACAGACATATGCTCCAATGACGCTGGCTGCTGCTCGCGACTTCTGGACTCTAAGATACACTACAAATTTGGAAAACGGCAGTGTTGTGGTTTGTGAAAGGTCACTGTCTGGTTCTGGTGCTGGTCCTAATGCTGCAGCTGCCTCACAGTTTGCGAGGGGTGAAATGCTCCCTAGTGGCTACTTGATTCGACCATGTGAAGGTGGAGGATCAATCATCCACATTGTAGACCACCTAAACCTGCAGGCATGGAGTGTGCCAGAAGTGCTGCGGCCGCTCTATGAATCGTCGCAAATGGTAGCTCAGAGATTGACAATTGCGGCACTTCGCTATATCAGGCAAGTAGCTCAAGAAACAAGTGGTGAAGTGGTGTATAGCATGGGTCGGCAACCTGCAGTTCTTAGAACTTTTAGCCAACGGTTGAGCAGAGGTTTCAATGACGCTGTCAATGGATTCAATGATGATGGCTGGTCTGTTCTGAACTGTGATGGTGCCGAGGGTGTTACTATTTCAGTGAATTCAATCAAGAATTTGAGTGGCACTTCTAATCCAGCAAGTTCCCTTTCACTCCTTGGAGGAATTGTCTGTGCAAAAGCTTCTATGTTACTCCAAAACACCACTCCTGCTGTTTTAGTTCGCTTTCTGAGGGAGCATCGCTCGGAGTGGGCTGATTTTAGTGTTGATGCCTTTTCTGCTGCATCACTCAAAGCTGGCTCCTATGGCTATCCTGGAATGAGGTCTACGAGGTTCACCGGCAATCAAGCAATCATGCCTCTTGGACATACAATTGAACATGAAGAGATGCTAGAAATTATCCGCCTTGAAGGTCTTGCTCAAGATGATTCTTTTGTTTCTAGGGATGTTCATCTCTTACAGTTATGTACTGGAATTGATGAGAATGCTGTGGGGGCTTGTTCCGAGCTCATATTTGCTCCAATTGATGACATGTTCCCAGAAGATGCTCCCTTGGTGCCTTCTGGTTTCCGCATTGTCCTGTTGAATTCTCAACCAGGTGATACAAAGAACATAACAGCAGCAAATCGAACCTTGGATTTGACATCTGGTCTTGAAGTAAGCCAGGCAACAGCTCATGCTAACGGAGATGCATCGTGTTCTAACAATCGATGTGCGTTGACTGTTGCCTTCCAGTTTCCTTTTGAGAGCGGTTTGCAGGATAATGTTGCAGCCATGGCACGTCAGTATGTCCGGCGTGTAGTTTCCGCTGTGCAGGCGGTTGCAACGGCTATATCTCCATCCAGCGTTAACACTTCTGGTGGAGCAAAACTCTCCCCTGGCACTCCAGAAGCACTTACACTAGCTCAATGGATCTGCCAGAGCTATAGTCATTATCTGGGGGCGCAACTGCTGAGATCTGATTCTCTTATTGGTGATATGCTACTGAAACATTTGTGGCATCATCCAGATGCTATTTTATGCTGCTCTTTGAAGCAAGTGCCCGTATTCATCTTTGCTAACCAGGCTGGCCTTGACATGTTGGAAACAACTCTAGTGGCTCTACAGGATATCACACTGGACAAAATATTTGATGAATCTGCACGCAAGAATTTGATTGCATATTTTGCGAAGTTAATGCAGCAGGGGTTTGCTTGTATGCCAGCTGGGATCTGCATGTCAACAATGGGGCGACATGCTTCATATGATCAAGCCGTCGCGTGGAAAGTGCATGCTGAAGACAACAGTGTTCATTGCTTGGCTTTCTCGTTCATTAATTGGTCATTTATATGA

Protein sequence

>MsaT010622.1

MAMAVAQQQRDNSIERHLDSSGKYVRYTAEQIEALEKVYVECPKPSSLRRQQLIRECPVLANIEPKQIKVWFQNRRCREKQRKEASQLQSVNRKLSAMNKLLMEENERLQKQVSQLVNENGFMRQQLHTTPAAPNADGSGVDSAAAAPMNSLRDANSPAGFLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQGGNGVAARACGLVSLEPTKIVEILKDRPTWYRDCRSSEVFTMFPAGNGGTIELVYTQTYAPMTLAAARDFWTLRYTTNLENGSVVVCERSLSGSGAGPNAAAASQFARGEMLPSGYLIRPCEGGGSIIHIVDHLNLQAWSVPEVLRPLYESSQMVAQRLTIAALRYIRQVAQETSGEVVYSMGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSVLNCDGAEGVTISVNSIKNLSGTSNPASSLSLLGGIVCAKASMLLQNTTPAVLVRFLREHRSEWADFSVDAFSAASLKAGSYGYPGMRSTRFTGNQAIMPLGHTIEHEEMLEIIRLEGLAQDDSFVSRDVHLLQLCTGIDENAVGACSELIFAPIDDMFPEDAPLVPSGFRIVLLNSQPGDTKNITAANRTLDLTSGLEVSQATAHANGDASCSNNRCALTVAFQFPFESGLQDNVAAMARQYVRRVVSAVQAVATAISPSSVNTSGGAKLSPGTPEALTLAQWICQSYSHYLGAQLLRSDSLIGDMLLKHLWHHPDAILCCSLKQVPVFIFANQAGLDMLETTLVALQDITLDKIFDESARKNLIAYFAKLMQQGFACMPAGICMSTMGRHASYDQAVAWKVHAEDNSVHCLAFSFINWSFI*