AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG010622


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG010622 MtrunA17_Chr2g0326731 98.212 839 15 0 1 839 1 839 0.0 1717
MsaG010622 MtrunA17_Chr4g0028991 79.811 847 160 7 1 839 3 846 0.0 1395
MsaG010622 MtrunA17_Chr2g0292391 63.929 840 283 8 13 839 4 836 0.0 1105
MsaG010622 MtrunA17_Chr2g0331131 62.275 835 289 10 21 839 12 836 0.0 1059
MsaG010622 MtrunA17_Chr3g0140351 61.837 849 297 12 3 839 2 835 0.0 1052
MsaG010622 MtrunA17_Chr8g0340411 60.072 839 306 11 16 839 8 832 0.0 1041
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG010622 AT5G60690.1 75.825 848 188 7 1 839 3 842 0.0 1332
MsaG010622 AT2G34710.1 62.818 866 278 12 3 839 2 852 0.0 1085
MsaG010622 AT1G30490.1 62.874 835 282 10 21 839 19 841 0.0 1062
MsaG010622 AT1G52150.1 61.916 835 289 14 21 839 15 836 0.0 1044
MsaG010622 AT1G52150.2 61.796 835 291 14 21 839 15 837 0.0 1043
MsaG010622 AT4G32880.1 60.143 838 306 13 17 839 9 833 0.0 1017
MsaG010622 AT1G52150.3 61.616 792 265 14 21 791 15 788 0.0 974
MsaG010622 AT5G32670.1 64.286 70 25 0 289 358 37 106 2.62e-25 104
MsaG010622 AT5G52170.2 25.203 369 218 11 24 355 61 408 4.00e-15 80.1
MsaG010622 AT5G52170.3 25.203 369 218 11 24 355 61 408 4.84e-15 79.7
MsaG010622 AT5G52170.1 25.203 369 218 11 24 355 61 408 4.84e-15 79.7
MsaG010622 AT4G04890.2 41.176 85 43 2 23 104 65 145 3.30e-11 67.8
MsaG010622 AT4G04890.1 41.176 85 43 2 23 104 65 145 3.30e-11 67.8

Find 229 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAGATCTGATTCTCTTAT+TGG 0.129142 2:+75601168 MsaT010622.1:CDS
TGGCTTTCTCGTTCATTAAT+TGG 0.181977 2:+75601744 MsaT010622.1:CDS
TGGCTGCTGCTCGCGACTTC+TGG 0.215757 2:+75598927 MsaT010622.1:CDS
GTCTGAAAGCAGTCATTATC+TGG 0.224488 2:+75601134 MsaT010622.1:intron
TAGGGATGTTCATCTCTTAC+AGG 0.241280 2:+75600374 MsaT010622.1:CDS
TCTAAGATACACTACAAATT+TGG 0.241855 2:+75598952 MsaT010622.1:CDS
GGCACCAAGGGAGCATCTTC+TGG 0.244403 2:-75600567 None:intergenic
TGAGCTAGTGTAAGTGCTTC+TGG 0.266525 2:-75601009 None:intergenic
GATGCTCCCTTGGTGCCTTC+TGG 0.276911 2:+75600573 MsaT010622.1:CDS
TAGAGCGGCCGCAGCACTTC+TGG 0.282965 2:-75599340 None:intergenic
GATTCGGGAGTGCCCGGTTT+TGG 0.283665 2:+75597605 MsaT010622.1:CDS
TGCAGGCACTTCGCTATATC+AGG 0.289145 2:+75599490 MsaT010622.1:intron
GCAAGTTCCCTTTCACTCCT+TGG 0.320702 2:+75599831 MsaT010622.1:CDS
CCGTCAGCATTTGGAGCTGC+TGG 0.331315 2:-75598104 None:intergenic
GGCTCAATGTTGGCCAAAAC+CGG 0.331817 2:-75597618 None:intergenic
GTCGATTGGGTCCAGATGCC+TGG 0.336793 2:+75598349 MsaT010622.1:CDS
TGAGAAGGCAACAGCTGATT+CGG 0.337430 2:+75597589 MsaT010622.1:CDS
TGCTGAACAGATTGAAGCTT+TGG 0.342547 2:+75597530 MsaT010622.1:CDS
GAACTCAGACCTGCAGGTTT+AGG 0.343156 2:-75599224 None:intergenic
GAAAGGTCACTGTCTGGTTC+TGG 0.344827 2:+75599087 MsaT010622.1:CDS
CGTTAGCATGAGCTGTTGCC+TGG 0.351416 2:-75600786 None:intergenic
CCATCCAGCGTTAACACTTC+TGG 0.355722 2:+75600961 MsaT010622.1:CDS
CTACCTTCATCCCAGGCATC+TGG 0.361257 2:-75598360 None:intergenic
TCAAGGTTTGGTTTCAGAAT+AGG 0.367043 2:+75597649 MsaT010622.1:CDS
AACCGCTCTCAAAAGGAAAC+TGG 0.368266 2:-75600855 None:intergenic
GGGTTTGCTTGTATGCCAGC+TGG 0.372830 2:+75601632 MsaT010622.1:CDS
GCAAATATCCCAACCGAATC+CGG 0.374500 2:-75598519 None:intergenic
CTAGAAATTATCCGCCTTGA+AGG 0.374957 2:+75600324 MsaT010622.1:CDS
CGAACCTTGGATTTGACATC+TGG 0.378202 2:+75600751 MsaT010622.1:CDS
TCACTGTCTGGTTCTGGTGC+TGG 0.384059 2:+75599093 MsaT010622.1:CDS
CGAGCAGCAGCCAGCGTCAT+TGG 0.385288 2:-75598917 None:intergenic
TGTGAGGCAGCTGCAGCATT+AGG 0.386159 2:-75599117 None:intergenic
CTTCTCAATGAACTAGGCTT+AGG 0.391335 2:-75597573 None:intergenic
TGCGATGAATAAGCTGTTGA+TGG 0.394036 2:+75597841 MsaT010622.1:CDS
TCACTCAAAGCTGGCTCCTA+TGG 0.398623 2:+75600086 MsaT010622.1:CDS
GGCTTACAGTGTGTAATTGC+TGG 0.398924 2:-75597925 None:intergenic
TTGTTAGCCTGGTCCGGATT+CGG 0.407612 2:+75598506 MsaT010622.1:intron
ACAATGTTCCCAGCTGGAAA+TGG 0.408347 2:+75598780 MsaT010622.1:CDS
ATGTCTCCTCCGCAATTGAT+AGG 0.410911 2:-75598291 None:intergenic
CGCTGTGCAGGCGGTTGCAA+CGG 0.418938 2:+75600930 MsaT010622.1:CDS
CATTGTTTGTTAGCCTGGTC+CGG 0.420545 2:+75598500 MsaT010622.1:intron
GCTGGCTCCTATGGCTATCC+TGG 0.420819 2:+75600095 MsaT010622.1:CDS
TCACAGCTGGTGAATGAGAA+TGG 0.421055 2:+75597893 MsaT010622.1:CDS
TCCGTTGCCACCTTGAGAAA+TGG 0.423146 2:-75598541 None:intergenic
ACGCCACTACCGTCAGCATT+TGG 0.423791 2:-75598113 None:intergenic
AATGGATCTGCCAGAGCTAT+AGG 0.426936 2:+75601031 MsaT010622.1:CDS
CGTCAGCATTTGGAGCTGCT+GGG 0.428553 2:-75598103 None:intergenic
CTCAGCTTCAGAGTGTGAAC+AGG 0.430488 2:+75597810 MsaT010622.1:CDS
GCATCTCTCAATGAATTCAT+AGG 0.433129 2:-75598155 None:intergenic
CACAGCTGGTGAATGAGAAT+GGG 0.435607 2:+75597894 MsaT010622.1:CDS
GAGAAGGCAACAGCTGATTC+GGG 0.436593 2:+75597590 MsaT010622.1:CDS
TCTGGGAACATGTCATCAAT+TGG 0.437275 2:-75600549 None:intergenic
TACAGGAACTGCTGTCGATT+GGG 0.439880 2:+75598336 MsaT010622.1:CDS
GTAAGTGCTTCTGGAGTGCC+AGG 0.441398 2:-75601000 None:intergenic
AGCCTAAGCAGATCAAGGTT+TGG 0.446562 2:+75597637 MsaT010622.1:CDS
CTAAAAGTTCTAAGAACTGC+AGG 0.446795 2:-75599564 None:intergenic
TCATTTGAACAGTTATGTAC+TGG 0.447517 2:+75600480 MsaT010622.1:intron
GGGATCTGCATGTCAACAAT+GGG 0.449516 2:+75601653 MsaT010622.1:CDS
AGACAACAGTGTTCATTGCT+TGG 0.451078 2:+75601724 MsaT010622.1:CDS
GAGCAGCATAAAATAGCATC+TGG 0.451862 2:-75601222 None:intergenic
AGGCATGATTGCTTGATTGC+CGG 0.454592 2:-75600138 None:intergenic
AGCTTTGGAAAAGGTTTATG+TGG 0.455518 2:+75597545 MsaT010622.1:CDS
AAATGAGAGGCTGCAGAAGC+AGG 0.455804 2:+75597868 MsaT010622.1:CDS
AGCCTGGTCCGGATTCGGTT+GGG 0.455928 2:+75598511 MsaT010622.1:intron
GCACCAAGGGAGCATCTTCT+GGG 0.456872 2:-75600566 None:intergenic
GGTTTCAATGACGCTGTCAA+TGG 0.456971 2:+75599708 MsaT010622.1:CDS
TCCTGCAAACCGCTCTCAAA+AGG 0.457002 2:-75600862 None:intergenic
TTTGAGTGATGCAGCAGAAA+AGG 0.462084 2:-75600072 None:intergenic
ACAGATTGAAGCTTTGGAAA+AGG 0.463288 2:+75597536 MsaT010622.1:CDS
CCATGGCACGTCAGTATGTC+CGG 0.463423 2:+75600896 MsaT010622.1:CDS
TACACTACAAATTTGGAAAA+CGG 0.463495 2:+75598959 MsaT010622.1:CDS
TGTTAGTTTAGAACCTACTA+AGG 0.469404 2:+75598587 MsaT010622.1:CDS
GCGTGTAGTTTCCGCTGTGC+AGG 0.471991 2:+75600918 MsaT010622.1:CDS
AACCTCGTAGACCTCATTCC+AGG 0.475028 2:-75600113 None:intergenic
TTCATCTTTGCTAACCAGGC+TGG 0.476545 2:+75601370 MsaT010622.1:CDS
GGGATATTTGCCATTTCTCA+AGG 0.476954 2:+75598531 MsaT010622.1:CDS
CTGGTTAGCAAAGATGAATA+CGG 0.477103 2:-75601365 None:intergenic
AGCTGCCTCACAGTTTGCGA+GGG 0.478943 2:+75599128 MsaT010622.1:CDS
ACAGCTGATTCGGGAGTGCC+CGG 0.479031 2:+75597599 MsaT010622.1:CDS
GGTCCAGATGCCTGGGATGA+AGG 0.479652 2:+75598357 MsaT010622.1:CDS
GAGGGAGCATCGCTCGGAGT+GGG 0.480911 2:+75600031 MsaT010622.1:CDS
GCTCTATGAATCGTCGCAAA+TGG 0.481115 2:+75599357 MsaT010622.1:CDS
CATCTTGAGCAAGACCTTCA+AGG 0.481464 2:-75600338 None:intergenic
CATATTTGCCAGACGAATCA+AGG 0.481482 2:-75597497 None:intergenic
AGGAGTGAAAGGGAACTTGC+TGG 0.482905 2:-75599828 None:intergenic
CAACTGGTTGAGAATTCAAC+AGG 0.483215 2:-75600608 None:intergenic
GTTTGTGAAAGGTCACTGTC+TGG 0.483493 2:+75599081 MsaT010622.1:CDS
CGTATTCATCTTTGCTAACC+AGG 0.483530 2:+75601366 MsaT010622.1:CDS
CAGCTGCCTCACAGTTTGCG+AGG 0.484030 2:+75599127 MsaT010622.1:CDS
TCTGCTGCATCACTCAAAGC+TGG 0.485761 2:+75600077 MsaT010622.1:CDS
TTCTCAATGAACTAGGCTTA+GGG 0.486895 2:-75597572 None:intergenic
TGTTGCCTTCTCAATGAACT+AGG 0.487411 2:-75597579 None:intergenic
ATTGTTCCTCCATTTCCAGC+TGG 0.487699 2:-75598789 None:intergenic
CAATTCCTCCAAGGAGTGAA+AGG 0.489942 2:-75599839 None:intergenic
TTGTTCCTCCATTTCCAGCT+GGG 0.490051 2:-75598788 None:intergenic
CTTTCTGAGGGAGCATCGCT+CGG 0.490804 2:+75600025 MsaT010622.1:CDS
GACAATCACGATACCAAGTT+GGG 0.492005 2:-75598740 None:intergenic
GCTCCAAATGCTGACGGTAG+TGG 0.492798 2:+75598110 MsaT010622.1:CDS
GGTTTGCTTGTATGCCAGCT+GGG 0.493869 2:+75601633 MsaT010622.1:CDS
GAGTTCCTTTCAAAGGCTAC+AGG 0.495421 2:+75598319 MsaT010622.1:CDS
AACAACTCTAGTGGCTCTAC+AGG 0.497254 2:+75601408 MsaT010622.1:CDS
AGAGATGCTAATAGCCCTGC+TGG 0.498973 2:+75598170 MsaT010622.1:CDS
TAGCCTGGTCCGGATTCGGT+TGG 0.499456 2:+75598510 MsaT010622.1:intron
CATTGAGCCTAAGCAGATCA+AGG 0.500320 2:+75597632 MsaT010622.1:CDS
CTACAGGAACTGCTGTCGAT+TGG 0.500801 2:+75598335 MsaT010622.1:CDS
GAGAGACACCTTGATTCGTC+TGG 0.501967 2:+75597489 MsaT010622.1:CDS
ATCTGGTCTTGAAGTAAGCC+AGG 0.503745 2:+75600768 MsaT010622.1:CDS
ATCCCAACCGAATCCGGACC+AGG 0.504673 2:-75598513 None:intergenic
GCAGGATAATGTTGCAGCCA+TGG 0.506426 2:+75600879 MsaT010622.1:CDS
GAACTTCAAAATTACCCAGC+AGG 0.508005 2:-75598185 None:intergenic
GCCATTTCTCAAGGTGGCAA+CGG 0.511290 2:+75598540 MsaT010622.1:CDS
TGGTCTGTTCTGAACTGTGA+TGG 0.511447 2:+75599747 MsaT010622.1:CDS
CACTTTGGAAGGTTTGTGAA+AGG 0.517480 2:+75599070 MsaT010622.1:intron
CCAGAAGTGTTAACGCTGGA+TGG 0.519643 2:-75600961 None:intergenic
GTTCCCAGAAGATGCTCCCT+TGG 0.524999 2:+75600563 MsaT010622.1:CDS
ATCAATTGCGGAGGAGACAT+TGG 0.525084 2:+75598294 MsaT010622.1:CDS
TCTGAAAGCAGTCATTATCT+GGG 0.529270 2:+75601135 MsaT010622.1:intron
CGACAATCACGATACCAAGT+TGG 0.529574 2:-75598741 None:intergenic
CAACTTGGTATCGTGATTGT+CGG 0.529939 2:+75598742 MsaT010622.1:CDS
GCAGAAGCAGGTTTCACAGC+TGG 0.531459 2:+75597880 MsaT010622.1:CDS
AGGTTTGGTTTCAGAATAGG+AGG 0.531854 2:+75597652 MsaT010622.1:CDS
GGTCGAATCAAGTAGCCACT+AGG 0.534816 2:-75599162 None:intergenic
TTCTAAACTAACAAGACCAC+AGG 0.536240 2:-75598577 None:intergenic
AATCAAGCAATCATGCCTCT+TGG 0.536445 2:+75600143 MsaT010622.1:CDS
AAGCACTTACACTAGCTCAA+TGG 0.536805 2:+75601013 MsaT010622.1:CDS
ATTGGCAGAGTTCCTTTCAA+AGG 0.541184 2:+75598312 MsaT010622.1:CDS
CCAGGCTGGCCTTGACATGT+TGG 0.541782 2:+75601384 MsaT010622.1:CDS
TCTTAAAAGATCGCCCAACT+TGG 0.542742 2:+75598727 MsaT010622.1:CDS
ATGAGGTCTACGAGGTTCAC+CGG 0.543253 2:+75600119 MsaT010622.1:CDS
GTTGACATGCAGATCCCAGC+TGG 0.543937 2:-75601647 None:intergenic
GTCAATGGATTCAATGATGA+TGG 0.544773 2:+75599723 MsaT010622.1:CDS
AGTTCCCTTTCACTCCTTGG+AGG 0.547829 2:+75599834 MsaT010622.1:CDS
GGTGGAGCAAAACTCTCCCC+TGG 0.550796 2:+75600982 MsaT010622.1:CDS
CGGAAACCAGAAGGCACCAA+GGG 0.551319 2:-75600579 None:intergenic
CAGTTCCTGTAGCCTTTGAA+AGG 0.551448 2:-75598324 None:intergenic
CTCAGACCTGCAGGTTTAGG+TGG 0.551972 2:-75599221 None:intergenic
CCAACATGTCAAGGCCAGCC+TGG 0.554158 2:-75601384 None:intergenic
GCACACTTTACCTATAGCTC+TGG 0.555699 2:-75601041 None:intergenic
TGGGATCTGCATGTCAACAA+TGG 0.558119 2:+75601652 MsaT010622.1:CDS
TCGATTGGGTCCAGATGCCT+GGG 0.561065 2:+75598350 MsaT010622.1:CDS
AGAAAGCGAACTAAAACAGC+AGG 0.564715 2:-75600008 None:intergenic
AATTCCTCCAAGGAGTGAAA+GGG 0.566854 2:-75599838 None:intergenic
TCTGAACTGTGATGGTGCCG+AGG 0.568521 2:+75599755 MsaT010622.1:CDS
TTGCAGATTCCTATCAATTG+CGG 0.571465 2:+75598282 MsaT010622.1:intron
CGACGTACCTGCTCAACCGT+TGG 0.573623 2:-75599587 None:intergenic
TCAAGAAACAAGTGGTGAAG+TGG 0.576595 2:+75599521 MsaT010622.1:CDS
GCTCAATGTTGGCCAAAACC+GGG 0.577313 2:-75597617 None:intergenic
TGAGGGAGCATCGCTCGGAG+TGG 0.578290 2:+75600030 MsaT010622.1:CDS
TGGTTAGCAAAGATGAATAC+GGG 0.580621 2:-75601364 None:intergenic
AATTCAATCAAGAATTTGAG+TGG 0.580677 2:+75599795 MsaT010622.1:CDS
CAGGCAACAGCTCATGCTAA+CGG 0.583410 2:+75600787 MsaT010622.1:CDS
GGAGTGGCAGCTCGAGCCTG+TGG 0.583765 2:+75598561 MsaT010622.1:CDS
GATCTGCTTAGGCTCAATGT+TGG 0.585016 2:-75597628 None:intergenic
ATGGATTCAATGATGATGGC+TGG 0.585896 2:+75599727 MsaT010622.1:CDS
ATTCGACCATGTGAAGGTGG+AGG 0.587006 2:+75599177 MsaT010622.1:CDS
AACAGCAGCAAATCGAACCT+TGG 0.587017 2:+75600738 MsaT010622.1:CDS
AACTTCAAAATTACCCAGCA+GGG 0.589166 2:-75598184 None:intergenic
TAGGGAGAAGCAGAGAAAAG+AGG 0.589529 2:+75597784 MsaT010622.1:CDS
GAGTTGTTTCCAACATGTCA+AGG 0.591719 2:-75601393 None:intergenic
TGTAGACCACCTAAACCTGC+AGG 0.594819 2:+75599215 MsaT010622.1:CDS
AAGACCAGATGTCAAATCCA+AGG 0.596011 2:-75600755 None:intergenic
GTCAGCATTTGGAGCTGCTG+GGG 0.596788 2:-75598102 None:intergenic
TGTTCAATTGTATGTCCAAG+AGG 0.596874 2:-75600158 None:intergenic
GCGAACTAAAACAGCAGGAG+TGG 0.597135 2:-75600003 None:intergenic
CATATGATCAAGCCGTCGCG+TGG 0.597983 2:+75601687 MsaT010622.1:CDS
CACTGAAATAGTAACACCCT+CGG 0.598397 2:-75599772 None:intergenic
TCCAGCGTTAACACTTCTGG+TGG 0.599839 2:+75600964 MsaT010622.1:CDS
CCGGACATACTGACGTGCCA+TGG 0.600199 2:-75600896 None:intergenic
CTAAGCCTAGTTCATTGAGA+AGG 0.603333 2:+75597574 MsaT010622.1:CDS
GATTAGGAAGAAGATGGCTA+TGG 0.605721 2:+75597434 None:intergenic
CTGAACTGTGATGGTGCCGA+GGG 0.608315 2:+75599756 MsaT010622.1:CDS
AATTGAACTTGTTTACACAC+AGG 0.608400 2:+75598809 MsaT010622.1:CDS
GTCGAATCAAGTAGCCACTA+GGG 0.608609 2:-75599161 None:intergenic
TTGCACAGACAATTCCTCCA+AGG 0.608666 2:-75599848 None:intergenic
ATGTTCCCAGCTGGAAATGG+AGG 0.609193 2:+75598783 MsaT010622.1:CDS
TGTAGTTTCCGCTGTGCAGG+CGG 0.609536 2:+75600921 MsaT010622.1:CDS
GGAATTGATGAGAATGCTGT+GGG 0.610922 2:+75600501 MsaT010622.1:CDS
GCGGAAACCAGAAGGCACCA+AGG 0.611214 2:-75600580 None:intergenic
TGATTCTCTACCTTCATCCC+AGG 0.611915 2:-75598367 None:intergenic
AATTGGAGCAAATATGAGCT+CGG 0.611962 2:-75600532 None:intergenic
CCTATGGCTATCCTGGAATG+AGG 0.613041 2:+75600102 MsaT010622.1:CDS
ATATGCTACTGAAACATTTG+TGG 0.613265 2:+75601193 MsaT010622.1:CDS
CCTCATTCCAGGATAGCCAT+AGG 0.613471 2:-75600102 None:intergenic
TTTGGAAAACGGCAGTGTTG+TGG 0.614841 2:+75598970 MsaT010622.1:CDS
CAGATTCCTATCAATTGCGG+AGG 0.615563 2:+75598285 MsaT010622.1:intron
TTGATTCGACCATGTGAAGG+TGG 0.621938 2:+75599174 MsaT010622.1:CDS
AGGACAATGCGGAAACCAGA+AGG 0.626123 2:-75600588 None:intergenic
ACATACAATTGAACATGAAG+AGG 0.627020 2:+75600166 MsaT010622.1:CDS
AAGTGGTGTATAGCATGGGT+CGG 0.629287 2:+75599538 MsaT010622.1:CDS
GACATATGCTCCAATGACGC+TGG 0.629499 2:+75598907 MsaT010622.1:intron
CTGAAAGCAGTCATTATCTG+GGG 0.631210 2:+75601136 MsaT010622.1:intron
TAAGTGCTTCTGGAGTGCCA+GGG 0.631518 2:-75600999 None:intergenic
AATTGATGAGAATGCTGTGG+GGG 0.634959 2:+75600503 MsaT010622.1:CDS
ATTGATCCTCCACCTTCACA+TGG 0.635822 2:-75599183 None:intergenic
TGGTGAAGTGGTGTATAGCA+TGG 0.636847 2:+75599533 MsaT010622.1:CDS
AAGTGCTTCTGGAGTGCCAG+GGG 0.637051 2:-75600998 None:intergenic
TTCTCAAGGTGGCAACGGAG+TGG 0.637931 2:+75598545 MsaT010622.1:CDS
GCTGCCTCACAGTTTGCGAG+GGG 0.640346 2:+75599129 MsaT010622.1:CDS
GGCTCTACAGGATATCACAC+TGG 0.641498 2:+75601420 MsaT010622.1:CDS
CGGTAGTGGCGTTGATTCTG+CGG 0.643778 2:+75598124 MsaT010622.1:CDS
CATGTTGGAAACAACTCTAG+TGG 0.653127 2:+75601399 MsaT010622.1:CDS
GCTCTCAAAAGGAAACTGGA+AGG 0.655094 2:-75600851 None:intergenic
GAGATGCTAATAGCCCTGCT+GGG 0.656369 2:+75598171 MsaT010622.1:CDS
TACTTGATTCGACCATGTGA+AGG 0.657308 2:+75599171 MsaT010622.1:CDS
TGGAATTGATGAGAATGCTG+TGG 0.658575 2:+75600500 MsaT010622.1:CDS
GGTGAAGTGGTGTATAGCAT+GGG 0.661299 2:+75599534 MsaT010622.1:CDS
ATATTTGCCATTTCTCAAGG+TGG 0.661399 2:+75598534 MsaT010622.1:CDS
CAAGTAGCTCAAGAAACAAG+TGG 0.662122 2:+75599513 MsaT010622.1:CDS
AGCATGCACTTTCCACGCGA+CGG 0.663627 2:-75601699 None:intergenic
AGCTCAGAGATTGACAATTG+CGG 0.667204 2:+75599381 MsaT010622.1:CDS
AGGGGTGAAATGCTCCCTAG+TGG 0.669242 2:+75599147 MsaT010622.1:CDS
AACCAAACCTTGATCTGCTT+AGG 0.671065 2:-75597639 None:intergenic
CGTTGCAACCGCCTGCACAG+CGG 0.677613 2:-75600929 None:intergenic
GGAGTGTGCCAGAAGTGCTG+CGG 0.679106 2:+75599332 MsaT010622.1:CDS
ATTCGTCTGGCAAATATGTG+CGG 0.682465 2:+75597502 MsaT010622.1:CDS
TCCACCAGAAGTGTTAACGC+TGG 0.686791 2:-75600965 None:intergenic
ATTTGCGACGATTCATAGAG+CGG 0.688818 2:-75599355 None:intergenic
TGAAAGCAGTCATTATCTGG+GGG 0.689197 2:+75601137 MsaT010622.1:intron
CCAGCAGCTCCAAATGCTGA+CGG 0.689268 2:+75598104 MsaT010622.1:CDS
TTCACCCCTCGCAAACTGTG+AGG 0.692443 2:-75599133 None:intergenic
GAGAATTCAACAGGACAATG+CGG 0.705796 2:-75600599 None:intergenic
GATGAATAAGCTGTTGATGG+AGG 0.710323 2:+75597844 MsaT010622.1:CDS
ATCCTGGAATGAGGTCTACG+AGG 0.714524 2:+75600111 MsaT010622.1:CDS
GAATTGATGAGAATGCTGTG+GGG 0.719666 2:+75600502 MsaT010622.1:CDS
TGTTGATGGAGGAAAATGAG+AGG 0.721292 2:+75597855 MsaT010622.1:CDS
GGTTTAGGTGGTCTACAATG+TGG 0.731869 2:-75599209 None:intergenic
GCACAGCGGAAACTACACGC+CGG 0.741198 2:-75600915 None:intergenic
GGATCTGCATGTCAACAATG+GGG 0.742598 2:+75601654 MsaT010622.1:CDS
CTTGAGCAAGACCTTCAAGG+CGG 0.775739 2:-75600335 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 75597447 75601778 75597447 ID=MsaG010622
Chr2 mRNA 75597447 75601778 75597447 ID=MsaT010622.1;Parent=MsaG010622
Chr2 exon 75597447 75597673 75597447 ID=MsaT010622.1.exon1;Parent=MsaT010622.1
Chr2 CDS 75597447 75597673 75597447 ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2 exon 75597781 75597940 75597781 ID=MsaT010622.1.exon2;Parent=MsaT010622.1
Chr2 CDS 75597781 75597940 75597781 ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2 exon 75598101 75598192 75598101 ID=MsaT010622.1.exon3;Parent=MsaT010622.1
Chr2 CDS 75598101 75598192 75598101 ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2 exon 75598288 75598378 75598288 ID=MsaT010622.1.exon4;Parent=MsaT010622.1
Chr2 CDS 75598288 75598378 75598288 ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2 exon 75598513 75598608 75598513 ID=MsaT010622.1.exon5;Parent=MsaT010622.1
Chr2 CDS 75598513 75598608 75598513 ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2 exon 75598717 75598830 75598717 ID=MsaT010622.1.exon6;Parent=MsaT010622.1
Chr2 CDS 75598717 75598830 75598717 ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2 exon 75598908 75598991 75598908 ID=MsaT010622.1.exon7;Parent=MsaT010622.1
Chr2 CDS 75598908 75598991 75598908 ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2 exon 75599081 75599236 75599081 ID=MsaT010622.1.exon8;Parent=MsaT010622.1
Chr2 CDS 75599081 75599236 75599081 ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2 exon 75599328 75599402 75599328 ID=MsaT010622.1.exon9;Parent=MsaT010622.1
Chr2 CDS 75599328 75599402 75599328 ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2 exon 75599495 75599601 75599495 ID=MsaT010622.1.exon10;Parent=MsaT010622.1
Chr2 CDS 75599495 75599601 75599495 ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2 exon 75599707 75599890 75599707 ID=MsaT010622.1.exon11;Parent=MsaT010622.1
Chr2 CDS 75599707 75599890 75599707 ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2 exon 75599999 75600187 75599999 ID=MsaT010622.1.exon12;Parent=MsaT010622.1
Chr2 CDS 75599999 75600187 75599999 ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2 exon 75600321 75600395 75600321 ID=MsaT010622.1.exon13;Parent=MsaT010622.1
Chr2 CDS 75600321 75600395 75600321 ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2 exon 75600492 75600626 75600492 ID=MsaT010622.1.exon14;Parent=MsaT010622.1
Chr2 CDS 75600492 75600626 75600492 ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2 exon 75600721 75601052 75600721 ID=MsaT010622.1.exon15;Parent=MsaT010622.1
Chr2 CDS 75600721 75601052 75600721 ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2 exon 75601146 75601251 75601146 ID=MsaT010622.1.exon16;Parent=MsaT010622.1
Chr2 CDS 75601146 75601251 75601146 ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2 exon 75601358 75601507 75601358 ID=MsaT010622.1.exon17;Parent=MsaT010622.1
Chr2 CDS 75601358 75601507 75601358 ID=cds.MsaT010622.1;Parent=MsaT010622.1
Chr2 exon 75601632 75601778 75601632 ID=MsaT010622.1.exon18;Parent=MsaT010622.1
Chr2 CDS 75601632 75601778 75601632 ID=cds.MsaT010622.1;Parent=MsaT010622.1
Gene Sequence

>MsaT010622.1

ATGGCTATGGCTGTTGCACAACAACAAAGAGATAACAGCATTGAGAGACACCTTGATTCGTCTGGCAAATATGTGCGGTACACTGCTGAACAGATTGAAGCTTTGGAAAAGGTTTATGTGGAATGCCCTAAGCCTAGTTCATTGAGAAGGCAACAGCTGATTCGGGAGTGCCCGGTTTTGGCCAACATTGAGCCTAAGCAGATCAAGGTTTGGTTTCAGAATAGGAGGTGTAGGGAGAAGCAGAGAAAAGAGGCTTCTCAGCTTCAGAGTGTGAACAGGAAACTTTCTGCGATGAATAAGCTGTTGATGGAGGAAAATGAGAGGCTGCAGAAGCAGGTTTCACAGCTGGTGAATGAGAATGGGTTTATGCGCCAGCAATTACACACTACCCCAGCAGCTCCAAATGCTGACGGTAGTGGCGTTGATTCTGCGGCTGCTGCTCCTATGAATTCATTGAGAGATGCTAATAGCCCTGCTGGATTCCTATCAATTGCGGAGGAGACATTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATATTTGCCATTTCTCAAGGTGGCAACGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACTAAGATTGTGGAGATCTTAAAAGATCGCCCAACTTGGTATCGTGATTGTCGGAGTTCAGAAGTTTTCACAATGTTCCCAGCTGGAAATGGAGGAACAATTGAACTTGTTTACACACAGACATATGCTCCAATGACGCTGGCTGCTGCTCGCGACTTCTGGACTCTAAGATACACTACAAATTTGGAAAACGGCAGTGTTGTGGTTTGTGAAAGGTCACTGTCTGGTTCTGGTGCTGGTCCTAATGCTGCAGCTGCCTCACAGTTTGCGAGGGGTGAAATGCTCCCTAGTGGCTACTTGATTCGACCATGTGAAGGTGGAGGATCAATCATCCACATTGTAGACCACCTAAACCTGCAGGCATGGAGTGTGCCAGAAGTGCTGCGGCCGCTCTATGAATCGTCGCAAATGGTAGCTCAGAGATTGACAATTGCGGCACTTCGCTATATCAGGCAAGTAGCTCAAGAAACAAGTGGTGAAGTGGTGTATAGCATGGGTCGGCAACCTGCAGTTCTTAGAACTTTTAGCCAACGGTTGAGCAGAGGTTTCAATGACGCTGTCAATGGATTCAATGATGATGGCTGGTCTGTTCTGAACTGTGATGGTGCCGAGGGTGTTACTATTTCAGTGAATTCAATCAAGAATTTGAGTGGCACTTCTAATCCAGCAAGTTCCCTTTCACTCCTTGGAGGAATTGTCTGTGCAAAAGCTTCTATGTTACTCCAAAACACCACTCCTGCTGTTTTAGTTCGCTTTCTGAGGGAGCATCGCTCGGAGTGGGCTGATTTTAGTGTTGATGCCTTTTCTGCTGCATCACTCAAAGCTGGCTCCTATGGCTATCCTGGAATGAGGTCTACGAGGTTCACCGGCAATCAAGCAATCATGCCTCTTGGACATACAATTGAACATGAAGAGATGCTAGAAATTATCCGCCTTGAAGGTCTTGCTCAAGATGATTCTTTTGTTTCTAGGGATGTTCATCTCTTACAGTTATGTACTGGAATTGATGAGAATGCTGTGGGGGCTTGTTCCGAGCTCATATTTGCTCCAATTGATGACATGTTCCCAGAAGATGCTCCCTTGGTGCCTTCTGGTTTCCGCATTGTCCTGTTGAATTCTCAACCAGGTGATACAAAGAACATAACAGCAGCAAATCGAACCTTGGATTTGACATCTGGTCTTGAAGTAAGCCAGGCAACAGCTCATGCTAACGGAGATGCATCGTGTTCTAACAATCGATGTGCGTTGACTGTTGCCTTCCAGTTTCCTTTTGAGAGCGGTTTGCAGGATAATGTTGCAGCCATGGCACGTCAGTATGTCCGGCGTGTAGTTTCCGCTGTGCAGGCGGTTGCAACGGCTATATCTCCATCCAGCGTTAACACTTCTGGTGGAGCAAAACTCTCCCCTGGCACTCCAGAAGCACTTACACTAGCTCAATGGATCTGCCAGAGCTATAGTCATTATCTGGGGGCGCAACTGCTGAGATCTGATTCTCTTATTGGTGATATGCTACTGAAACATTTGTGGCATCATCCAGATGCTATTTTATGCTGCTCTTTGAAGCAAGTGCCCGTATTCATCTTTGCTAACCAGGCTGGCCTTGACATGTTGGAAACAACTCTAGTGGCTCTACAGGATATCACACTGGACAAAATATTTGATGAATCTGCACGCAAGAATTTGATTGCATATTTTGCGAAGTTAATGCAGCAGGGGTTTGCTTGTATGCCAGCTGGGATCTGCATGTCAACAATGGGGCGACATGCTTCATATGATCAAGCCGTCGCGTGGAAAGTGCATGCTGAAGACAACAGTGTTCATTGCTTGGCTTTCTCGTTCATTAATTGGTCATTTATATGA

Protein sequence

>MsaT010622.1

MAMAVAQQQRDNSIERHLDSSGKYVRYTAEQIEALEKVYVECPKPSSLRRQQLIRECPVLANIEPKQIKVWFQNRRCREKQRKEASQLQSVNRKLSAMNKLLMEENERLQKQVSQLVNENGFMRQQLHTTPAAPNADGSGVDSAAAAPMNSLRDANSPAGFLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQGGNGVAARACGLVSLEPTKIVEILKDRPTWYRDCRSSEVFTMFPAGNGGTIELVYTQTYAPMTLAAARDFWTLRYTTNLENGSVVVCERSLSGSGAGPNAAAASQFARGEMLPSGYLIRPCEGGGSIIHIVDHLNLQAWSVPEVLRPLYESSQMVAQRLTIAALRYIRQVAQETSGEVVYSMGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSVLNCDGAEGVTISVNSIKNLSGTSNPASSLSLLGGIVCAKASMLLQNTTPAVLVRFLREHRSEWADFSVDAFSAASLKAGSYGYPGMRSTRFTGNQAIMPLGHTIEHEEMLEIIRLEGLAQDDSFVSRDVHLLQLCTGIDENAVGACSELIFAPIDDMFPEDAPLVPSGFRIVLLNSQPGDTKNITAANRTLDLTSGLEVSQATAHANGDASCSNNRCALTVAFQFPFESGLQDNVAAMARQYVRRVVSAVQAVATAISPSSVNTSGGAKLSPGTPEALTLAQWICQSYSHYLGAQLLRSDSLIGDMLLKHLWHHPDAILCCSLKQVPVFIFANQAGLDMLETTLVALQDITLDKIFDESARKNLIAYFAKLMQQGFACMPAGICMSTMGRHASYDQAVAWKVHAEDNSVHCLAFSFINWSFI*