AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG010631


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG010631 MtrunA17_Chr6g0478701 100.000 168 0 0 1 168 1 168 4.37e-122 340
MsaG010631 MtrunA17_Chr2g0326811 99.405 168 1 0 1 168 1 168 1.46e-121 339
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG010631 AT5G03500.6 77.976 168 37 0 1 168 11 178 1.67e-89 259
MsaG010631 AT5G03500.3 77.976 168 37 0 1 168 1 168 1.67e-89 259
MsaG010631 AT5G03500.4 77.976 168 37 0 1 168 1 168 1.67e-89 259
MsaG010631 AT5G03500.2 77.976 168 37 0 1 168 1 168 1.67e-89 259
MsaG010631 AT5G03500.5 77.976 168 37 0 1 168 1 168 1.67e-89 259
MsaG010631 AT5G03500.7 77.976 168 37 0 1 168 1 168 1.67e-89 259
MsaG010631 AT5G03500.1 77.976 168 37 0 1 168 1 168 1.67e-89 259
MsaG010631 AT5G03220.1 79.167 168 35 0 1 168 1 168 1.75e-84 246

Find 41 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAACTCTGATTCACATTT+TGG 0.181104 2:+75780292 MsaT010631.1:CDS
AGAATTGCAACTACACATTT+TGG 0.197843 2:+75780040 MsaT010631.1:CDS
CACCACCACCACCTTATTAC+AGG 0.297273 2:+75777443 MsaT010631.1:CDS
AAGGAGCTGAGGTCACTTAA+TGG 0.305351 2:+75780017 MsaT010631.1:CDS
TAAGATAGCCTACCAATATT+AGG 0.320366 2:-75779216 None:intergenic
GAAGGAACTTATATTTGTTT+CGG 0.355999 2:+75777523 MsaT010631.1:CDS
GAATTCTCTGCGTCCTCATC+AGG 0.376395 2:+75780154 MsaT010631.1:CDS
GGAGGCTCTGGAGCAGACTC+AGG 0.379890 2:-75777490 None:intergenic
AAGCTGTGGAGGACATAAAT+AGG 0.396665 2:+75780339 MsaT010631.1:CDS
TCAATCGGTGGTGGAGGCTC+TGG 0.403322 2:-75777502 None:intergenic
GAGTCATTGGCAACACTTGA+TGG 0.406036 2:+75781948 MsaT010631.1:CDS
CTGGAGCAGACTCAGGGTCC+TGG 0.414763 2:-75777483 None:intergenic
TATTCTAAAGGACCTAATAT+TGG 0.416061 2:+75779204 MsaT010631.1:CDS
CTGTAATAAGGTGGTGGTGG+TGG 0.437759 2:-75777442 None:intergenic
TCTTTGTAAAGCCTGTAATA+AGG 0.439294 2:-75777454 None:intergenic
GTGTTGCCAATGACTCGTTA+AGG 0.463201 2:-75781941 None:intergenic
ACTCCTTGTTCTTCCAAGCT+TGG 0.471721 2:-75779171 None:intergenic
AAGAATCCTTAACGAGTCAT+TGG 0.477983 2:+75781935 MsaT010631.1:CDS
CAAATATAAGTTCCTTCAAT+CGG 0.478209 2:-75777517 None:intergenic
GAGCCTCCACCACCGATTGA+AGG 0.480913 2:+75777505 MsaT010631.1:CDS
TAGGTCCTTTAGAATAGAGT+TGG 0.518443 2:-75779197 None:intergenic
ACTCTCCTTGCATATTGTGA+TGG 0.520397 2:-75780089 None:intergenic
GTTCCTTCAATCGGTGGTGG+AGG 0.523884 2:-75777508 None:intergenic
GAGGCTCTGGAGCAGACTCA+GGG 0.526066 2:-75777489 None:intergenic
TAGTGATGTTCTACCAAGCT+TGG 0.528638 2:+75779158 MsaT010631.1:CDS
GTACGCCAACTCTATTCTAA+AGG 0.536469 2:+75779192 MsaT010631.1:CDS
TGTAATAAGGTGGTGGTGGT+GGG 0.546044 2:-75777441 None:intergenic
GAGGACGCAGAGAATTCAAA+AGG 0.547381 2:-75780148 None:intergenic
TAAGTTCCTTCAATCGGTGG+TGG 0.561411 2:-75777511 None:intergenic
GGAACTTATATTTGTTTCGG+AGG 0.567063 2:+75777526 MsaT010631.1:CDS
CTACCAAGCTTGGAAGAACA+AGG 0.582575 2:+75779168 MsaT010631.1:CDS
AGCCTGTAATAAGGTGGTGG+TGG 0.598331 2:-75777445 None:intergenic
TAGATTTCAAGAAGGAGCTG+AGG 0.608725 2:+75780006 MsaT010631.1:intron
AGAACGTCGTAAACAAGCTG+TGG 0.618675 2:+75780325 MsaT010631.1:CDS
AGAGACCATCACAATATGCA+AGG 0.622612 2:+75780084 MsaT010631.1:CDS
AGATCATTGTATACCTGATG+AGG 0.623348 2:-75780167 None:intergenic
ATATAAGTTCCTTCAATCGG+TGG 0.635000 2:-75777514 None:intergenic
GCTTTACAAAGATTACGTCC+AGG 0.635871 2:+75777465 MsaT010631.1:CDS
TTGTAAAGCCTGTAATAAGG+TGG 0.646875 2:-75777451 None:intergenic
TAAAGCCTGTAATAAGGTGG+TGG 0.655388 2:-75777448 None:intergenic
ACGTCGTAAACAAGCTGTGG+AGG 0.660694 2:+75780328 MsaT010631.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 75777424 75781977 75777424 ID=MsaG010631
Chr2 mRNA 75777424 75781977 75777424 ID=MsaT010631.1;Parent=MsaG010631
Chr2 exon 75777424 75777558 75777424 ID=MsaT010631.1.exon1;Parent=MsaT010631.1
Chr2 CDS 75777424 75777558 75777424 ID=cds.MsaT010631.1;Parent=MsaT010631.1
Chr2 exon 75779156 75779225 75779156 ID=MsaT010631.1.exon2;Parent=MsaT010631.1
Chr2 CDS 75779156 75779225 75779156 ID=cds.MsaT010631.1;Parent=MsaT010631.1
Chr2 exon 75780009 75780175 75780009 ID=MsaT010631.1.exon3;Parent=MsaT010631.1
Chr2 CDS 75780009 75780175 75780009 ID=cds.MsaT010631.1;Parent=MsaT010631.1
Chr2 exon 75780287 75780360 75780287 ID=MsaT010631.1.exon4;Parent=MsaT010631.1
Chr2 CDS 75780287 75780360 75780287 ID=cds.MsaT010631.1;Parent=MsaT010631.1
Chr2 exon 75781917 75781977 75781917 ID=MsaT010631.1.exon5;Parent=MsaT010631.1
Chr2 CDS 75781917 75781977 75781917 ID=cds.MsaT010631.1;Parent=MsaT010631.1
Gene Sequence

>MsaT010631.1

ATGGCAACGGCAACATACCCACCACCACCACCTTATTACAGGCTTTACAAAGATTACGTCCAGGACCCTGAGTCTGCTCCAGAGCCTCCACCACCGATTGAAGGAACTTATATTTGTTTCGGAGGCAGTTACACTACTAGTGATGTTCTACCAAGCTTGGAAGAACAAGGAGTACGCCAACTCTATTCTAAAGGACCTAATATTGATTTCAAGAAGGAGCTGAGGTCACTTAATGGAGAATTGCAACTACACATTTTGGAGCTTGCTGATATTCTTATTGAGAGACCATCACAATATGCAAGGAGAGTCGAAGAAATTTCAACCGTGTTCAAAAATTTGCATCACCTTTTGAATTCTCTGCGTCCTCATCAGGCAAGAGCAACTCTGATTCACATTTTGGAACTTCAGATAGAACGTCGTAAACAAGCTGTGGAGGACATAAATAGGAGGAGAGAAGAAGCTCGAAGAATCCTTAACGAGTCATTGGCAACACTTGATGGCCATTAA

Protein sequence

>MsaT010631.1

MATATYPPPPPYYRLYKDYVQDPESAPEPPPPIEGTYICFGGSYTTSDVLPSLEEQGVRQLYSKGPNIDFKKELRSLNGELQLHILELADILIERPSQYARRVEEISTVFKNLHHLLNSLRPHQARATLIHILELQIERRKQAVEDINRRREEARRILNESLATLDGH*