AlfalfaGEDB | MsaG010644

M. sativa ssp. caerulea / MsaG010644

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010644	GAU22574.1	58.047	758	288	8	84	825	11	754	0.0	918

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010644	sp\|Q9SZL8\|FRS5_ARATH	28.397	655	418	12	72	701	6	634	6.70e-86	296

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010644	tr\|A0A2Z6LT40\|A0A2Z6LT40_TRISU	58.047	758	288	8	84	825	11	754	0.0	918

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TFs/TRs:

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Gene ID	Type	Classification
MsaG010644	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000015	MsaG010644	0.802483	9.226445e-49	1.319730e-46
MsaG000030	MsaG010644	0.825709	7.186377e-54	1.843496e-51
MsaG000045	MsaG010644	0.812777	6.148739e-51	1.124142e-48
MsaG000062	MsaG010644	0.826561	4.516417e-54	1.186298e-51
MsaG000083	MsaG010644	0.858001	2.168622e-62	1.563878e-59
MsaG000110	MsaG010644	0.808817	4.382222e-50	7.273108e-48
MsaG000113	MsaG010644	0.843178	3.065440e-58	1.323790e-55
MsaG000135	MsaG010644	0.802333	9.904675e-49	1.411898e-46
MsaG000151	MsaG010644	0.894321	6.166806e-75	2.289645e-71
MsaG000153	MsaG010644	0.879134	3.358506e-69	5.824925e-66

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010644	MtrunA17_Chr1g0203051	46.766	603	303	5	103	688	20	621	0.0	569
MsaG010644	MtrunA17_Chr2g0287651	35.656	732	433	13	138	845	47	764	6.41e-142	446
MsaG010644	MtrunA17_Chr1g0171741	65.862	290	55	8	1	275	1	261	2.01e-108	336
MsaG010644	MtrunA17_Chr5g0448761	30.573	628	397	13	165	761	64	683	3.11e-91	308
MsaG010644	MtrunA17_Chr1g0202341	31.111	585	365	12	149	701	31	609	1.34e-90	303
MsaG010644	MtrunA17_Chr8g0363841	30.106	568	355	11	168	704	24	580	1.19e-84	287
MsaG010644	MtrunA17_Chr1g0198761	27.786	709	439	15	166	825	52	736	6.24e-73	256
MsaG010644	MtrunA17_Chr2g0296781	29.204	678	413	19	165	799	1	654	3.89e-72	253
MsaG010644	MtrunA17_Chr3g0082121	29.225	568	355	12	165	706	47	593	1.16e-71	251
MsaG010644	MtrunA17_Chr2g0308841	46.637	223	119	0	478	700	4	226	4.37e-70	234

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010644	AT4G38180.1	28.397	655	418	12	72	701	6	634	6.81e-87	296
MsaG010644	AT4G15090.1	27.857	560	376	9	165	701	55	609	3.45e-70	250
MsaG010644	AT4G15090.5	27.857	560	376	9	165	701	55	609	3.45e-70	250
MsaG010644	AT4G15090.3	27.857	560	376	9	165	701	55	609	3.45e-70	250
MsaG010644	AT4G15090.2	27.857	560	376	9	165	701	55	609	3.45e-70	250
MsaG010644	AT4G15090.4	27.857	560	376	9	165	701	55	609	3.45e-70	250
MsaG010644	AT3G22170.2	26.330	752	483	15	74	799	2	708	1.26e-69	249
MsaG010644	AT3G22170.1	26.330	752	483	15	74	799	2	708	1.26e-69	249
MsaG010644	AT3G06250.2	29.541	545	342	10	165	701	194	704	1.37e-69	247
MsaG010644	AT3G06250.1	29.541	545	342	10	165	701	194	704	1.37e-69	247

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Find 237 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTCATGACTTCTGGT+AGG	0.554651	2:+75946624	MsaT010644.1:CDS
AAACCTTGAAGATGACGCGG+TGG	0.719654	2:+75944933	MsaT010644.1:CDS
AAACTTATCACTTCAAATAG+GGG	0.599416	2:+75947078	MsaT010644.1:CDS
AAAGCGCAAAAGTATGATTA+TGG	0.302332	2:+75946542	MsaT010644.1:intron
AAAGGTAGAGGTGGTGGTGT+TGG	0.534503	2:+75944991	MsaT010644.1:CDS
AAATCCATTCGCTCTTCCAT+AGG	0.527086	2:-75943122	None:intergenic
AAATCCTATGGAAGAGCGAA+TGG	0.535778	2:+75943118	MsaT010644.1:CDS
AAATCTGCCTAAACTTGATA+AGG	0.426247	2:-75946073	None:intergenic
AAATGAAGCATATATGCGAT+TGG	0.502723	2:-75943471	None:intergenic
AAATGCAGGATCGCCTATGT+TGG	0.552799	2:-75944026	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	75942587	75947239	75942587	ID=MsaG010644
Chr2	mRNA	75942587	75947239	75942587	ID=MsaT010644.1;Parent=MsaG010644
Chr2	exon	75942587	75943338	75942587	ID=MsaT010644.1.exon1;Parent=MsaT010644.1
Chr2	CDS	75942587	75943338	75942587	ID=cds.MsaT010644.1;Parent=MsaT010644.1
Chr2	exon	75943379	75945108	75943379	ID=MsaT010644.1.exon2;Parent=MsaT010644.1
Chr2	CDS	75943379	75945108	75943379	ID=cds.MsaT010644.1;Parent=MsaT010644.1
Chr2	exon	75946034	75946081	75946034	ID=MsaT010644.1.exon3;Parent=MsaT010644.1
Chr2	CDS	75946034	75946081	75946034	ID=cds.MsaT010644.1;Parent=MsaT010644.1
Chr2	exon	75946546	75946779	75946546	ID=MsaT010644.1.exon4;Parent=MsaT010644.1
Chr2	CDS	75946546	75946779	75946546	ID=cds.MsaT010644.1;Parent=MsaT010644.1
Chr2	exon	75947067	75947239	75947067	ID=MsaT010644.1.exon5;Parent=MsaT010644.1
Chr2	CDS	75947067	75947239	75947067	ID=cds.MsaT010644.1;Parent=MsaT010644.1

Gene Sequence

>MsaT010644.1

ATGGGATACCGAGCTTTTGACTGTGAGCAATTTATTGGGCCTGAAAAAGGTGATGGAAGTCCCGAAGAAGGGGTAGACATTAGAGAATCTGAAGAAGAGGTTAGGGTTGAGGAGGGGGGATACAGTGGTAACATGGAATATGATGGAAGTGATTATGAAGGCGAAGACAATGTTGAGTTTGACGAAGATGGAGGTAGAGGGCAATCCGGAAACATTAGTGACTTTGATGAAGGGGTCAATTATGGTGACATGGAAGAAGATGGAAGTGATGAAGAAGGGGTAGACAATGCTGACATTGAAGACTATGGAAGTGATGAAGAAGGGGTAGACAATGCTGACATTGAAGACGATGGAAGTGATGCAGAAGGGGTAGACTATGGTGACATGGAAGAAGATGGAAGTCACAATGAAGACCACTATGTCCAAGTTGATAGTGTTGAGGACGTTGTGGCATTGGACCTAAGTGGTTTAGGGCCTCTATTTGTTAGGAGAATTGCGTTTGGAAGCCTAGACATTGCATATGAGTTCTATAAATCCTATGGAAGAGCGAATGGATTTTCAGTTCGCAAAGGCAAGTTGCTTTATTGCAAAACGGGAGAACTAGTGCAACGCACATTTGTTTGCCATAGACAAGGATATAGGGAAAAAAGAGGATTAAGTGAGGCGAATAGAAAGCGTAAGGAAAAACCTAATACTCGATGTGGATGTCAAGCTATGTTTCGGGTGCACATAAACATTACGACACAACGCTGTATCGCAGAACATTGTGGGTACTATCTTCACTGTGTAATGACAGATTCAGACATAATGCAAATGAACAATATGTTAAAAAGTGGTATTTTACCCAATCGCATATATGCTTCATTTGCAAATCAAGCAGGAGGATATGATAAAATTGGTTTCCGGAGGAAAGATCTGTATAATCAAATAGCAAGACAACGGCGTTTGCGAAAGTCAGATGCAAGTTCTGCATTAAGTTATCTTCGTGGATTGGCTGTAAATGATCCCATGATGTTTTTCAAGCACACTACTGATTCTACAGGTAGACTACAACACCTGTTTTGGTGTGACGGAAAAAGTCGTCTTGATTACCAAATTTATGGCGACGTAGTCGCATTTGATGCAACATATGGTAAGAACAAATACCATTGCCCTTTAGTTGTGTTTGCTGGTGTGAATAATCATAACTCTACTATTGTTTTTGGTGGAGCTATTGTTGCTGATGAGAAGGAAGAAACTTATGTCTGGGTGCTTTCACGGTTCTTGGAAGCAATGTCTGGAAAGTCGCCAACTGCTGTAATCACTGATGGTGATTTATCAATGAAGAATGCCATAAAACAAGTGTTTCCAAATGCTTATCATAGACTGTGTGCGTGGCACTTGATTCGCAATGCATCGTCCAACATAGGCGATCCTGCATTTGTGAATGAATTTAGAAAGTGTATGTTGGGCGACTATGAGATTGGAGAATTTTCCAGGAAGTGGGCTGAAAATGTTGATTCATTTGGATTGCATGACAACAATTGGATCAAAGAAACATATATGAATAGAAAGGCATGGGCAACAGCACATATACGTGGCCATTTTTTTGCAGGCTTCAGAACTACATCTCGATGCGAGGGGTTGCATTCAGAGATGGGGAAGTTTGTTCATTCTCGTTACAACTTGGCAGATTTTTTACTACACTATCACCGTTGTCTCAACTTCATGCGGTATAGAGAGGTCCAAGCAGACTTTGAAAGTGATTATGGTGAGCCTGTTCTCATTACAAGATTCCCTAAACTTGAGGTCTCTGGTGCGAAGGTATTTACGAAAGAGATATTTTGTAAATATCAGATGTTAATCAACCGATCTTCTGCCATGGTCGTAACTGGATCGAAAGAAACATGTGGGTACCACATTTATACTGTTAGTAAGTACAGGAGACCAGACCGGGAGTGGTGTGTATCATTTAACCCTTCAGAAGAAATTTTCAGGTGTGCTTGTCGGAGGATGGAGTCATTTGGAATTCCATGTGAGCATATCATTGCAGTTTTGGTTTTTACTGATTTTGCTGAGTTGCCTGAATCCCTTGTACTGAGTAGATGGACAAAGAATGCTAAGGATGTATTAGGTAGCATCTCAAATGGTCGTCCGACATATTGGGACTCGCACCATGCAACAAGATACGGAGCATTGATGTTTAGATGGGGGAGATTGTCTAAATTAGTCGTTGACAACGGTAATGACTACAAAGAGCACATGGACATTGCGGCTGCAGCTATTTTGAAAGCCGAACAAAAGAGAGGCATAAGTGATACCACGACAAACCTTGAAGATGACGCGGTGGACGAAAATTTGCAAAATCCAGCTTCTGTCAGAACCAAAGGTAGAGGTGGTGGTGTTGGTTCCACTAGTGGAACAAACAATAGGCGTGTCACCCATTGTTCTACATGTGGTGATCCTGGTCATAATAAGAAAACATGTCCTCAAAGAACGGTTGTTTTTTCTTCCAAATTTTTTTATTCTGAAAACCACATATCCTTATCAACGCAAAAGTATGATTATGGATGGATTAGGGATCCAAATGGCACCTGTGTACGAGTTAAGTTTGGGAGAAATTTAAGCCAAAATTTCATGACTTCTGGTAGGGACGTCGCAGCTAAATTCAACTGGGAGAAACCAACACGTGTTAGGCTTGAATATACTGGCGCTTTTAACGAGTTCAAGATGATGGTTTTGGTGGATGAAGTAGGAAGTTCAGGGAAATACAATCAAGGAAGAAAATATGAGTGCAAACTTATCACTTCAAATAGGGGTCCAAATGAGAAATACTTAGGTGAAGATTGGCCCAAGTTCGTGAAGGACCGTAGACTAAGGAAAGGTGATAAGTTGATATTTGATCTTTGTGCTCCTCCCAATCGTCTCTTTGTGGAGGTTGTCAAGCGTCGTCGTTAG

Protein sequence

>MsaT010644.1

MGYRAFDCEQFIGPEKGDGSPEEGVDIRESEEEVRVEEGGYSGNMEYDGSDYEGEDNVEFDEDGGRGQSGNISDFDEGVNYGDMEEDGSDEEGVDNADIEDYGSDEEGVDNADIEDDGSDAEGVDYGDMEEDGSHNEDHYVQVDSVEDVVALDLSGLGPLFVRRIAFGSLDIAYEFYKSYGRANGFSVRKGKLLYCKTGELVQRTFVCHRQGYREKRGLSEANRKRKEKPNTRCGCQAMFRVHINITTQRCIAEHCGYYLHCVMTDSDIMQMNNMLKSGILPNRIYASFANQAGGYDKIGFRRKDLYNQIARQRRLRKSDASSALSYLRGLAVNDPMMFFKHTTDSTGRLQHLFWCDGKSRLDYQIYGDVVAFDATYGKNKYHCPLVVFAGVNNHNSTIVFGGAIVADEKEETYVWVLSRFLEAMSGKSPTAVITDGDLSMKNAIKQVFPNAYHRLCAWHLIRNASSNIGDPAFVNEFRKCMLGDYEIGEFSRKWAENVDSFGLHDNNWIKETYMNRKAWATAHIRGHFFAGFRTTSRCEGLHSEMGKFVHSRYNLADFLLHYHRCLNFMRYREVQADFESDYGEPVLITRFPKLEVSGAKVFTKEIFCKYQMLINRSSAMVVTGSKETCGYHIYTVSKYRRPDREWCVSFNPSEEIFRCACRRMESFGIPCEHIIAVLVFTDFAELPESLVLSRWTKNAKDVLGSISNGRPTYWDSHHATRYGALMFRWGRLSKLVVDNGNDYKEHMDIAAAAILKAEQKRGISDTTTNLEDDAVDENLQNPASVRTKGRGGGVGSTSGTNNRRVTHCSTCGDPGHNKKTCPQRTVVFSSKFFYSENHISLSTQKYDYGWIRDPNGTCVRVKFGRNLSQNFMTSGRDVAAKFNWEKPTRVRLEYTGAFNEFKMMVLVDEVGSSGKYNQGRKYECKLITSNRGPNEKYLGEDWPKFVKDRRLRKGDKLIFDLCAPPNRLFVEVVKRRR*