AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG010644


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG010644 MtrunA17_Chr1g0203051 46.766 603 303 5 103 688 20 621 0.0 569
MsaG010644 MtrunA17_Chr2g0287651 35.656 732 433 13 138 845 47 764 6.41e-142 446
MsaG010644 MtrunA17_Chr1g0171741 65.862 290 55 8 1 275 1 261 2.01e-108 336
MsaG010644 MtrunA17_Chr5g0448761 30.573 628 397 13 165 761 64 683 3.11e-91 308
MsaG010644 MtrunA17_Chr1g0202341 31.111 585 365 12 149 701 31 609 1.34e-90 303
MsaG010644 MtrunA17_Chr8g0363841 30.106 568 355 11 168 704 24 580 1.19e-84 287
MsaG010644 MtrunA17_Chr1g0198761 27.786 709 439 15 166 825 52 736 6.24e-73 256
MsaG010644 MtrunA17_Chr2g0296781 29.204 678 413 19 165 799 1 654 3.89e-72 253
MsaG010644 MtrunA17_Chr3g0082121 29.225 568 355 12 165 706 47 593 1.16e-71 251
MsaG010644 MtrunA17_Chr2g0308841 46.637 223 119 0 478 700 4 226 4.37e-70 234
MsaG010644 MtrunA17_Chr6g0477261 32.727 440 277 7 277 701 10 445 2.12e-69 244
MsaG010644 MtrunA17_Chr6g0458391 27.687 549 373 10 165 701 229 765 7.01e-69 245
MsaG010644 MtrunA17_Chr2g0324011 26.655 559 384 9 165 701 14 568 2.48e-68 239
MsaG010644 MtrunA17_Chr1g0207551 28.419 563 366 13 165 701 38 589 1.48e-66 239
MsaG010644 MtrunA17_Chr5g0448511 31.818 396 263 3 311 701 4 397 1.51e-66 233
MsaG010644 MtrunA17_Chr5g0441581 26.074 698 459 16 124 793 8 676 6.01e-66 235
MsaG010644 MtrunA17_Chr3g0118611 31.026 419 281 3 313 726 111 526 1.33e-65 236
MsaG010644 MtrunA17_Chr1g0203721 26.618 680 432 16 156 792 64 719 2.01e-64 234
MsaG010644 MtrunA17_Chr3g0080351 27.786 673 431 16 155 806 72 710 4.65e-64 233
MsaG010644 MtrunA17_Chr5g0440451 27.461 579 359 11 165 702 47 605 3.31e-63 231
MsaG010644 MtrunA17_Chr2g0291581 26.726 565 380 10 159 701 69 621 1.08e-59 217
MsaG010644 MtrunA17_Chr2g0287061 27.757 544 355 11 167 702 189 702 1.39e-59 219
MsaG010644 MtrunA17_Chr2g0329031 27.076 554 375 11 165 700 18 560 6.45e-57 210
MsaG010644 MtrunA17_Chr1g0196541 27.448 572 382 11 165 710 1 565 2.13e-56 208
MsaG010644 MtrunA17_Chr2g0276841 26.400 625 398 17 167 755 76 674 2.94e-55 204
MsaG010644 MtrunA17_Chr5g0431001 29.291 437 263 11 166 563 66 495 4.33e-51 188
MsaG010644 MtrunA17_Chr2g0291591 26.471 510 329 10 162 641 65 558 3.76e-50 187
MsaG010644 MtrunA17_Chr2g0290391 25.175 572 370 13 165 696 55 608 3.87e-48 183
MsaG010644 MtrunA17_Chr2g0294841 25.890 618 394 18 116 696 13 603 7.30e-48 183
MsaG010644 MtrunA17_Chr1g0164591 31.579 247 157 3 292 533 68 307 4.71e-40 151
MsaG010644 MtrunA17_Chr7g0258861 26.370 292 184 6 167 434 16 300 3.01e-24 104
MsaG010644 MtrunA17_Chr8g0389811 36.306 157 87 2 107 250 17 173 3.61e-24 101
MsaG010644 MtrunA17_Chr2g0331371 33.529 170 102 4 121 282 17 183 8.25e-21 92.0
MsaG010644 MtrunA17_Chr8g0340801 40.777 103 61 0 261 363 5 107 2.45e-20 87.0
MsaG010644 MtrunA17_Chr6g0473421 36.207 116 72 1 121 236 17 130 7.51e-20 87.4
MsaG010644 MtrunA17_Chr1g0172931 33.981 103 68 0 141 243 56 158 1.58e-13 69.3
MsaG010644 MtrunA17_Chr1g0149131 28.182 110 74 1 425 529 1 110 2.64e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG010644 AT4G38180.1 28.397 655 418 12 72 701 6 634 6.81e-87 296
MsaG010644 AT4G15090.1 27.857 560 376 9 165 701 55 609 3.45e-70 250
MsaG010644 AT4G15090.5 27.857 560 376 9 165 701 55 609 3.45e-70 250
MsaG010644 AT4G15090.3 27.857 560 376 9 165 701 55 609 3.45e-70 250
MsaG010644 AT4G15090.2 27.857 560 376 9 165 701 55 609 3.45e-70 250
MsaG010644 AT4G15090.4 27.857 560 376 9 165 701 55 609 3.45e-70 250
MsaG010644 AT3G22170.2 26.330 752 483 15 74 799 2 708 1.26e-69 249
MsaG010644 AT3G22170.1 26.330 752 483 15 74 799 2 708 1.26e-69 249
MsaG010644 AT3G06250.2 29.541 545 342 10 165 701 194 704 1.37e-69 247
MsaG010644 AT3G06250.1 29.541 545 342 10 165 701 194 704 1.37e-69 247
MsaG010644 AT3G06250.3 29.541 545 342 10 165 701 194 704 1.37e-69 247
MsaG010644 AT5G18960.2 28.938 546 347 12 165 701 215 728 1.44e-64 233
MsaG010644 AT5G18960.1 28.938 546 347 12 165 701 215 728 1.44e-64 233
MsaG010644 AT2G27110.2 26.910 602 380 12 125 704 19 582 6.72e-62 227
MsaG010644 AT2G27110.1 26.910 602 380 12 125 704 19 582 6.72e-62 227
MsaG010644 AT4G19990.3 27.273 627 409 14 167 773 27 626 6.70e-60 219
MsaG010644 AT4G19990.4 27.273 627 409 14 167 773 27 626 6.70e-60 219
MsaG010644 AT4G19990.5 27.273 627 409 14 167 773 27 626 8.54e-60 219
MsaG010644 AT4G19990.7 27.273 627 409 14 167 773 41 640 1.10e-59 219
MsaG010644 AT4G19990.6 27.273 627 409 14 167 773 27 626 1.89e-59 218
MsaG010644 AT4G19990.2 27.273 627 409 14 167 773 27 626 1.89e-59 218
MsaG010644 AT2G27110.3 28.974 390 269 3 320 704 51 437 1.15e-58 215
MsaG010644 AT1G52520.1 26.108 632 406 16 165 761 89 694 1.96e-58 214
MsaG010644 AT1G76320.3 25.610 656 448 11 165 800 1 636 3.49e-58 213
MsaG010644 AT1G76320.2 27.240 558 373 9 165 702 1 545 3.76e-58 214
MsaG010644 AT1G76320.1 27.240 558 373 9 165 702 1 545 4.67e-58 213
MsaG010644 AT1G76320.4 27.240 558 373 9 165 702 1 545 4.67e-58 213
MsaG010644 AT1G10240.2 26.623 616 399 16 114 698 11 604 1.97e-57 211
MsaG010644 AT1G10240.1 26.623 616 399 16 114 698 11 604 1.97e-57 211
MsaG010644 AT4G19990.1 26.891 595 389 13 198 773 2 569 1.74e-55 205
MsaG010644 AT4G38170.1 28.021 389 269 5 319 701 16 399 3.82e-51 189
MsaG010644 AT2G32250.8 23.905 548 368 9 167 702 3 513 8.06e-51 192
MsaG010644 AT2G32250.5 24.081 544 364 9 167 698 44 550 8.58e-51 192
MsaG010644 AT2G32250.7 23.905 548 368 9 167 702 3 513 8.62e-51 192
MsaG010644 AT2G32250.2 24.081 544 364 9 167 698 44 550 8.68e-51 193
MsaG010644 AT2G32250.4 24.081 544 364 9 167 698 44 550 8.68e-51 193
MsaG010644 AT2G32250.6 24.081 544 364 9 167 698 44 550 1.04e-50 193
MsaG010644 AT2G32250.1 24.081 544 364 9 167 698 44 550 1.04e-50 193
MsaG010644 AT2G32250.3 24.081 544 364 9 167 698 44 550 1.04e-50 193
MsaG010644 AT5G28530.1 25.214 583 386 12 167 711 61 631 2.37e-49 187
MsaG010644 AT1G80010.1 29.032 465 301 9 314 761 264 716 1.97e-48 185
MsaG010644 AT5G28530.3 24.871 583 384 12 167 711 61 627 2.04e-48 184
MsaG010644 AT5G28530.2 24.871 583 384 12 167 711 61 627 2.04e-48 184
MsaG010644 AT5G28530.4 22.592 571 353 15 167 711 61 568 1.35e-31 132
MsaG010644 AT5G28530.5 22.242 571 351 15 167 711 61 564 9.65e-31 129

Find 237 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTCTTGATTACCAAATTTA+TGG 0.093929 2:+75943707 MsaT010644.1:CDS
TACCAGAAGTCATGAAATTT+TGG 0.173937 2:-75946622 None:intergenic
TTTGACTGTGAGCAATTTAT+TGG 0.193198 2:+75942602 MsaT010644.1:CDS
CTGGGTGCTTTCACGGTTCT+TGG 0.219863 2:+75943871 MsaT010644.1:CDS
CGACTACGTCGCCATAAATT+TGG 0.227284 2:-75943718 None:intergenic
GCAAACTTATCACTTCAAAT+AGG 0.238418 2:+75947076 MsaT010644.1:CDS
GCATTGGACCTAAGTGGTTT+AGG 0.241561 2:+75943037 MsaT010644.1:CDS
TGACATCCACATCGAGTATT+AGG 0.257636 2:-75943274 None:intergenic
GCAGGAGGATATGATAAAAT+TGG 0.269500 2:+75943503 MsaT010644.1:CDS
AGAGGTTAGGGTTGAGGAGG+GGG 0.271498 2:+75942682 MsaT010644.1:CDS
GCAGACTTTGAAAGTGATTA+TGG 0.272736 2:+75944355 MsaT010644.1:CDS
CAATTTATTGGGCCTGAAAA+AGG 0.279570 2:+75942614 MsaT010644.1:CDS
TGCCCTTTAGTTGTGTTTGC+TGG 0.283748 2:+75943776 MsaT010644.1:CDS
ATCAAAGTCACTAATGTTTC+CGG 0.287438 2:-75942792 None:intergenic
CATTGGACCTAAGTGGTTTA+GGG 0.287558 2:+75943038 MsaT010644.1:CDS
CACCAGAGACCTCAAGTTTA+GGG 0.292108 2:-75944402 None:intergenic
CAAATGGTCGTCCGACATAT+TGG 0.295035 2:+75944749 MsaT010644.1:CDS
AAAGCGCAAAAGTATGATTA+TGG 0.302332 2:+75946542 MsaT010644.1:intron
CGTCCACCGCGTCATCTTCA+AGG 0.302526 2:-75944936 None:intergenic
AGCCAAAATTTCATGACTTC+TGG 0.304534 2:+75946620 MsaT010644.1:CDS
TGAGCATATCATTGCAGTTT+TGG 0.306428 2:+75944642 MsaT010644.1:CDS
TCACCTAAGTATTTCTCATT+TGG 0.308885 2:-75947102 None:intergenic
GCACCAGAGACCTCAAGTTT+AGG 0.311084 2:-75944403 None:intergenic
GTGGATGAAGTAGGAAGTTC+AGG 0.313272 2:+75946737 MsaT010644.1:CDS
CAAACTTATCACTTCAAATA+GGG 0.313955 2:+75947077 MsaT010644.1:CDS
TCTAATGTCTACCCCTTCTT+CGG 0.315940 2:-75942648 None:intergenic
ACGGAGCATTGATGTTTAGA+TGG 0.326638 2:+75944794 MsaT010644.1:CDS
TTTCCCTATATCCTTGTCTA+TGG 0.328372 2:-75943210 None:intergenic
ACCTGTGTACGAGTTAAGTT+TGG 0.331180 2:+75946587 MsaT010644.1:CDS
GCTGAAAATGTTGATTCATT+TGG 0.334918 2:+75944112 MsaT010644.1:CDS
AAGAATGCTAAGGATGTATT+AGG 0.335664 2:+75944718 MsaT010644.1:CDS
GTTTAGGGCCTCTATTTGTT+AGG 0.338727 2:+75943053 MsaT010644.1:CDS
GATATGATAAAATTGGTTTC+CGG 0.348455 2:+75943510 MsaT010644.1:CDS
TTTGATGAAGGGGTCAATTA+TGG 0.349566 2:+75942809 MsaT010644.1:CDS
TTGGATTGCATGACAACAAT+TGG 0.352628 2:+75944131 MsaT010644.1:CDS
CGAGTTCAAGATGATGGTTT+TGG 0.353882 2:+75946715 MsaT010644.1:CDS
CTACTCAGTACAAGGGATTC+AGG 0.354902 2:-75944688 None:intergenic
GAGGTTAGGGTTGAGGAGGG+GGG 0.355934 2:+75942683 MsaT010644.1:CDS
TCTTCTGCCATGGTCGTAAC+TGG 0.364844 2:+75944478 MsaT010644.1:CDS
CTTATGTCTGGGTGCTTTCA+CGG 0.373774 2:+75943864 MsaT010644.1:CDS
GAGAATCTGAAGAAGAGGTT+AGG 0.374436 2:+75942669 MsaT010644.1:CDS
CGGTTCTTGGAAGCAATGTC+TGG 0.378525 2:+75943884 MsaT010644.1:CDS
TCTACGGTCCTTCACGAACT+TGG 0.378944 2:-75947133 None:intergenic
AGTATGATTATGGATGGATT+AGG 0.381484 2:+75946552 MsaT010644.1:CDS
TGGATGTCAAGCTATGTTTC+GGG 0.381907 2:+75943288 MsaT010644.1:CDS
GTAGACTACAACACCTGTTT+TGG 0.384756 2:+75943669 MsaT010644.1:CDS
TTGACTGTGAGCAATTTATT+GGG 0.384793 2:+75942603 MsaT010644.1:CDS
GGTTGTCAAGCGTCGTCGTT+AGG 0.389363 2:+75947218 MsaT010644.1:CDS
TTGCCATAGACAAGGATATA+GGG 0.392846 2:+75943207 MsaT010644.1:CDS
CTAAATTCATTCACAAATGC+AGG 0.393246 2:-75944040 None:intergenic
AATCCCTTGTACTGAGTAGA+TGG 0.399110 2:+75944692 MsaT010644.1:CDS
AAATGGTCGTCCGACATATT+GGG 0.404889 2:+75944750 MsaT010644.1:CDS
AACACCACCACCTCTACCTT+TGG 0.405185 2:-75944989 None:intergenic
ACGTCGCAGCTAAATTCAAC+TGG 0.409112 2:+75946648 MsaT010644.1:CDS
ACTCGTACACAGGTGCCATT+TGG 0.409607 2:-75946578 None:intergenic
TTTGCCATAGACAAGGATAT+AGG 0.415768 2:+75943206 MsaT010644.1:CDS
AAGAGGTTAGGGTTGAGGAG+GGG 0.416967 2:+75942681 MsaT010644.1:CDS
CACAGTCTATGATAAGCATT+TGG 0.421361 2:-75943974 None:intergenic
AGAAGGAAGAAACTTATGTC+TGG 0.422342 2:+75943852 MsaT010644.1:CDS
AAGTTGCTTTATTGCAAAAC+GGG 0.422706 2:+75943160 MsaT010644.1:CDS
AATGTTGAGTTTGACGAAGA+TGG 0.422787 2:+75942755 MsaT010644.1:CDS
GGGAATCTTGTAATGAGAAC+AGG 0.424670 2:-75944382 None:intergenic
TGAAGAAGAGGTTAGGGTTG+AGG 0.425594 2:+75942676 MsaT010644.1:CDS
AAATCTGCCTAAACTTGATA+AGG 0.426247 2:-75946073 None:intergenic
GTGGATGTCAAGCTATGTTT+CGG 0.428196 2:+75943287 MsaT010644.1:CDS
AATGCTGACATTGAAGACTA+TGG 0.428600 2:+75942872 MsaT010644.1:CDS
CAAGTTGCTTTATTGCAAAA+CGG 0.435164 2:+75943159 MsaT010644.1:CDS
GTATGATTATGGATGGATTA+GGG 0.435600 2:+75946553 MsaT010644.1:CDS
CTAATGTCTACCCCTTCTTC+GGG 0.435670 2:-75942647 None:intergenic
AGAATCTGAAGAAGAGGTTA+GGG 0.440423 2:+75942670 MsaT010644.1:CDS
TGTCGGAGGATGGAGTCATT+TGG 0.440844 2:+75944610 MsaT010644.1:CDS
CCTTTGGTTCTGACAGAAGC+TGG 0.441218 2:-75944973 None:intergenic
GATGCAGAAGGGGTAGACTA+TGG 0.449884 2:+75942944 MsaT010644.1:CDS
ACCTCCACAAAGAGACGATT+GGG 0.451863 2:-75947198 None:intergenic
CAGGTGTGCTTGTCGGAGGA+TGG 0.453329 2:+75944600 MsaT010644.1:CDS
AACATTAGTGACTTTGATGA+AGG 0.453377 2:+75942797 MsaT010644.1:CDS
ATTAAGTTATCTTCGTGGAT+TGG 0.453855 2:+75943598 MsaT010644.1:CDS
GGGAGAAACCAACACGTGTT+AGG 0.454348 2:+75946669 MsaT010644.1:CDS
CACCTGAAAATTTCTTCTGA+AGG 0.454758 2:-75944583 None:intergenic
TGTTCTACATGTGGTGATCC+TGG 0.457457 2:+75945051 MsaT010644.1:CDS
GAATTTAGAAAGTGTATGTT+GGG 0.460730 2:+75944055 MsaT010644.1:CDS
CGTCCTCAACACTATCAACT+TGG 0.462744 2:-75943009 None:intergenic
AGAAATACTTAGGTGAAGAT+TGG 0.462766 2:+75947109 MsaT010644.1:CDS
GAAGAGGTTAGGGTTGAGGA+GGG 0.464161 2:+75942680 MsaT010644.1:CDS
ACACCAGCAAACACAACTAA+AGG 0.465120 2:-75943779 None:intergenic
TCCTCCCAATCGTCTCTTTG+TGG 0.465471 2:+75947194 MsaT010644.1:CDS
TTCCCTAAACTTGAGGTCTC+TGG 0.468810 2:+75944400 MsaT010644.1:CDS
TATGAGTTCTATAAATCCTA+TGG 0.471575 2:+75943106 MsaT010644.1:CDS
CCACTAGTGGAACAAACAAT+AGG 0.472273 2:+75945016 MsaT010644.1:CDS
GTCGCATTTGATGCAACATA+TGG 0.477229 2:+75943737 MsaT010644.1:CDS
GATACACACCACTCCCGGTC+TGG 0.478847 2:-75944553 None:intergenic
TTTGTTAGGAGAATTGCGTT+TGG 0.482820 2:+75943067 MsaT010644.1:CDS
CGGAGCATTGATGTTTAGAT+GGG 0.483289 2:+75944795 MsaT010644.1:CDS
TCTGCATTAAGTTATCTTCG+TGG 0.484141 2:+75943593 MsaT010644.1:CDS
AAGATGGAAGTGATGAAGAA+GGG 0.485499 2:+75942843 MsaT010644.1:CDS
ATCACCACATGTAGAACAAT+GGG 0.486133 2:-75945046 None:intergenic
GCAATTCTCCTAACAAATAG+AGG 0.486616 2:-75943061 None:intergenic
TTGTCCATCTACTCAGTACA+AGG 0.487636 2:-75944696 None:intergenic
CGCAAAAGTATGATTATGGA+TGG 0.488948 2:+75946546 MsaT010644.1:CDS
GAAGATGGAAGTGATGAAGA+AGG 0.490931 2:+75942842 MsaT010644.1:CDS
TGTTGAGGACGTTGTGGCAT+TGG 0.493296 2:+75943021 MsaT010644.1:CDS
AATCACTTTCAAAGTCTGCT+TGG 0.494576 2:-75944351 None:intergenic
GATTATACAGATCTTTCCTC+CGG 0.496017 2:-75943529 None:intergenic
TGAATTTAGAAAGTGTATGT+TGG 0.497046 2:+75944054 MsaT010644.1:CDS
AGAAACATATATGAATAGAA+AGG 0.497898 2:+75944159 MsaT010644.1:CDS
CACCAGCAAACACAACTAAA+GGG 0.499168 2:-75943778 None:intergenic
GACTATGGAAGTGATGAAGA+AGG 0.501702 2:+75942887 MsaT010644.1:CDS
CCTATTGTTTGTTCCACTAG+TGG 0.502065 2:-75945016 None:intergenic
AAATGAAGCATATATGCGAT+TGG 0.502723 2:-75943471 None:intergenic
ACTATGGAAGTGATGAAGAA+GGG 0.503372 2:+75942888 MsaT010644.1:CDS
AATGAAGCATATATGCGATT+GGG 0.504951 2:-75943470 None:intergenic
CGAGGGGTTGCATTCAGAGA+TGG 0.505096 2:+75944243 MsaT010644.1:CDS
TATCACCTTTCCTTAGTCTA+CGG 0.505505 2:-75947149 None:intergenic
TTTGACGAAGATGGAGGTAG+AGG 0.507926 2:+75942764 MsaT010644.1:CDS
TTTATACTGTTAGTAAGTAC+AGG 0.508208 2:+75944527 MsaT010644.1:CDS
CCTGTGTACGAGTTAAGTTT+GGG 0.512909 2:+75946588 MsaT010644.1:CDS
ACCTGAAAATTTCTTCTGAA+GGG 0.515017 2:-75944582 None:intergenic
GGTCCAAATGAGAAATACTT+AGG 0.515401 2:+75947099 MsaT010644.1:CDS
AGATGGAAGTGATGAAGAAG+GGG 0.515964 2:+75942844 MsaT010644.1:CDS
CTAAACTTGATAAGGATATG+TGG 0.516019 2:-75946065 None:intergenic
GATGGAGGTAGAGGGCAATC+CGG 0.516291 2:+75942773 MsaT010644.1:CDS
CTAGTATCGCAGAACATTGT+GGG 0.517046 2:+75943375 MsaT010644.1:intron
CACTATCAACTTGGACATAG+TGG 0.517223 2:-75943000 None:intergenic
GAGGGGTTGCATTCAGAGAT+GGG 0.521750 2:+75944244 MsaT010644.1:CDS
CGCAATGCATCGTCCAACAT+AGG 0.526577 2:+75944013 MsaT010644.1:CDS
AAATCCATTCGCTCTTCCAT+AGG 0.527086 2:-75943122 None:intergenic
TGAGTACCAACCGTTCTTTG+AGG 0.527248 2:-75945093 None:intergenic
AGAAGAGGTTAGGGTTGAGG+AGG 0.527981 2:+75942679 MsaT010644.1:CDS
TAAGTACAGGAGACCAGACC+GGG 0.529132 2:+75944540 MsaT010644.1:CDS
ACAGGAGACCAGACCGGGAG+TGG 0.532393 2:+75944545 MsaT010644.1:CDS
TATGGTGACATGGAAGAAGA+TGG 0.533811 2:+75942827 MsaT010644.1:CDS
AAAGGTAGAGGTGGTGGTGT+TGG 0.534503 2:+75944991 MsaT010644.1:CDS
AAATCCTATGGAAGAGCGAA+TGG 0.535778 2:+75943118 MsaT010644.1:CDS
GGTGGTGTTGGTTCCACTAG+TGG 0.536621 2:+75945003 MsaT010644.1:CDS
CATTAGAGAATCTGAAGAAG+AGG 0.538773 2:+75942664 MsaT010644.1:CDS
CGTGTTAGGCTTGAATATAC+TGG 0.538941 2:+75946683 MsaT010644.1:CDS
TATGGTGACATGGAAGAAGA+TGG 0.540056 2:+75942962 MsaT010644.1:CDS
TCGTGAAGGACCGTAGACTA+AGG 0.541590 2:+75947139 MsaT010644.1:CDS
TACAAGATTCCCTAAACTTG+AGG 0.541738 2:+75944393 MsaT010644.1:CDS
TGTTCATTCTCGTTACAACT+TGG 0.544135 2:+75944273 MsaT010644.1:CDS
TATGATGGAAGTGATTATGA+AGG 0.544947 2:+75942725 MsaT010644.1:CDS
GGTGATGGAAGTCCCGAAGA+AGG 0.546443 2:+75942635 MsaT010644.1:CDS
AACCTCCACAAAGAGACGAT+TGG 0.547571 2:-75947199 None:intergenic
GTATTAGGTAGCATCTCAAA+TGG 0.548916 2:+75944733 MsaT010644.1:CDS
AAGCACACTACTGATTCTAC+AGG 0.549607 2:+75943647 MsaT010644.1:CDS
AGAACCAAAGGTAGAGGTGG+TGG 0.551384 2:+75944985 MsaT010644.1:CDS
AGTGGTAACATGGAATATGA+TGG 0.552792 2:+75942710 MsaT010644.1:CDS
AAATGCAGGATCGCCTATGT+TGG 0.552799 2:-75944026 None:intergenic
AAAATTTCATGACTTCTGGT+AGG 0.554651 2:+75946624 MsaT010644.1:CDS
TCGCACCATGCAACAAGATA+CGG 0.555096 2:+75944775 MsaT010644.1:CDS
CTACGGTCCTTCACGAACTT+GGG 0.555110 2:-75947132 None:intergenic
CATATATGAATAGAAAGGCA+TGG 0.558494 2:+75944164 MsaT010644.1:CDS
TAAATGATACACACCACTCC+CGG 0.558551 2:-75944558 None:intergenic
GCTTCATTTGCAAATCAAGC+AGG 0.558899 2:+75943485 MsaT010644.1:CDS
AAATTTCATGACTTCTGGTA+GGG 0.559101 2:+75946625 MsaT010644.1:CDS
TATTCAAGCCTAACACGTGT+TGG 0.559860 2:-75946677 None:intergenic
TCCCAATCGTCTCTTTGTGG+AGG 0.560244 2:+75947197 MsaT010644.1:CDS
CTATGGAAGTGATGAAGAAG+GGG 0.564439 2:+75942889 MsaT010644.1:CDS
CATTAGTGACTTTGATGAAG+GGG 0.564858 2:+75942799 MsaT010644.1:CDS
GTAAGTACAGGAGACCAGAC+CGG 0.566941 2:+75944539 MsaT010644.1:CDS
CCAGCTTCTGTCAGAACCAA+AGG 0.567748 2:+75944973 MsaT010644.1:CDS
GACGATGGAAGTGATGCAGA+AGG 0.568544 2:+75942932 MsaT010644.1:CDS
GTGATGGAAGTCCCGAAGAA+GGG 0.571019 2:+75942636 MsaT010644.1:CDS
CCATCAGTGATTACAGCAGT+TGG 0.572619 2:-75943914 None:intergenic
TGGATGAAGTAGGAAGTTCA+GGG 0.575482 2:+75946738 MsaT010644.1:CDS
GGATGGATTAGGGATCCAAA+TGG 0.577469 2:+75946563 MsaT010644.1:CDS
AGTTCAGGGAAATACAATCA+AGG 0.577621 2:+75946752 MsaT010644.1:CDS
ATGTTGGGCGACTATGAGAT+TGG 0.579671 2:+75944070 MsaT010644.1:CDS
AGAACTCATATGCAATGTCT+AGG 0.580623 2:-75943093 None:intergenic
ATATATGAATAGAAAGGCAT+GGG 0.581176 2:+75944165 MsaT010644.1:CDS
CAGAACTACATCTCGATGCG+AGG 0.582695 2:+75944225 MsaT010644.1:CDS
CCCAAACTTAACTCGTACAC+AGG 0.584015 2:-75946588 None:intergenic
TCTGTCAGAACCAAAGGTAG+AGG 0.585093 2:+75944979 MsaT010644.1:CDS
AGAACTACATCTCGATGCGA+GGG 0.587042 2:+75944226 MsaT010644.1:CDS
CGATGGAAGTGATGCAGAAG+GGG 0.589903 2:+75942934 MsaT010644.1:CDS
GAAGGAAGAAACTTATGTCT+GGG 0.596096 2:+75943853 MsaT010644.1:CDS
GTCATCTTCAAGGTTTGTCG+TGG 0.598881 2:-75944926 None:intergenic
AAACTTATCACTTCAAATAG+GGG 0.599416 2:+75947078 MsaT010644.1:CDS
TGAGGCGAATAGAAAGCGTA+AGG 0.599853 2:+75943246 MsaT010644.1:CDS
ACATTAGTGACTTTGATGAA+GGG 0.602492 2:+75942798 MsaT010644.1:CDS
TTACGACCATGGCAGAAGAT+CGG 0.602602 2:-75944474 None:intergenic
ACGATGGAAGTGATGCAGAA+GGG 0.604212 2:+75942933 MsaT010644.1:CDS
ATGATAAAATTGGTTTCCGG+AGG 0.604330 2:+75943513 MsaT010644.1:CDS
ACTTGAGGTCTCTGGTGCGA+AGG 0.605303 2:+75944408 MsaT010644.1:CDS
CAACTTCATGCGGTATAGAG+AGG 0.605921 2:+75944327 MsaT010644.1:CDS
GCTAGTATCGCAGAACATTG+TGG 0.607824 2:+75943374 MsaT010644.1:intron
TTGACGAAGATGGAGGTAGA+GGG 0.608903 2:+75942765 MsaT010644.1:CDS
GAAAACATGTCCTCAAAGAA+CGG 0.609153 2:+75945083 MsaT010644.1:CDS
ATTGCTCACAGTCAAAAGCT+CGG 0.610556 2:-75942595 None:intergenic
ACATGTCCTCAAAGAACGGT+TGG 0.611044 2:+75945087 MsaT010644.1:CDS
CCAACTGCTGTAATCACTGA+TGG 0.613682 2:+75943914 MsaT010644.1:CDS
GATCACCACATGTAGAACAA+TGG 0.617533 2:-75945047 None:intergenic
ATAGAGGCCCTAAACCACTT+AGG 0.619141 2:-75943045 None:intergenic
TTGAAAGCCGAACAAAAGAG+AGG 0.620386 2:+75944892 MsaT010644.1:CDS
GTCAGAACCAAAGGTAGAGG+TGG 0.620505 2:+75944982 MsaT010644.1:CDS
GTTGTGGCATTGGACCTAAG+TGG 0.621849 2:+75943031 MsaT010644.1:CDS
AATCAACCGATCTTCTGCCA+TGG 0.622000 2:+75944468 MsaT010644.1:CDS
ATGCTCCGTATCTTGTTGCA+TGG 0.623256 2:-75944780 None:intergenic
AGCTATTGTTGCTGATGAGA+AGG 0.624857 2:+75943835 MsaT010644.1:CDS
TTTCGATCCAGTTACGACCA+TGG 0.625726 2:-75944485 None:intergenic
TGATGGAAGTCCCGAAGAAG+GGG 0.626647 2:+75942637 MsaT010644.1:CDS
TCATTTGCAAATCAAGCAGG+AGG 0.627756 2:+75943488 MsaT010644.1:CDS
CGTCGCAGCTAAATTCAACT+GGG 0.629434 2:+75946649 MsaT010644.1:CDS
TGTCCAAGTTGATAGTGTTG+AGG 0.634638 2:+75943006 MsaT010644.1:CDS
ACTGCAATGATATGCTCACA+TGG 0.637565 2:-75944637 None:intergenic
ACATTTGTTTGCCATAGACA+AGG 0.637774 2:+75943199 MsaT010644.1:CDS
GTTGAGTTTGACGAAGATGG+AGG 0.639808 2:+75942758 MsaT010644.1:CDS
GAGCATTGATGTTTAGATGG+GGG 0.641638 2:+75944797 MsaT010644.1:CDS
GTCACCCATTGTTCTACATG+TGG 0.642108 2:+75945042 MsaT010644.1:CDS
CTGGATCGAAAGAAACATGT+GGG 0.648357 2:+75944497 MsaT010644.1:CDS
AGGGGTCAATTATGGTGACA+TGG 0.648973 2:+75942817 MsaT010644.1:CDS
GGAGCATTGATGTTTAGATG+GGG 0.651394 2:+75944796 MsaT010644.1:CDS
ACCGTTGTCTCAACTTCATG+CGG 0.651626 2:+75944317 MsaT010644.1:CDS
TCTAAATTAGTCGTTGACAA+CGG 0.655153 2:+75944826 MsaT010644.1:CDS
ACTTACTAACAGTATAAATG+TGG 0.657066 2:-75944522 None:intergenic
AATGCTGACATTGAAGACGA+TGG 0.658945 2:+75942917 MsaT010644.1:CDS
AGGGGTAGACTATGGTGACA+TGG 0.659480 2:+75942952 MsaT010644.1:CDS
TAGATGGACAAAGAATGCTA+AGG 0.660597 2:+75944708 MsaT010644.1:CDS
TCCACAAAGAGACGATTGGG+AGG 0.661851 2:-75947195 None:intergenic
AGGGGTTGCATTCAGAGATG+GGG 0.662827 2:+75944245 MsaT010644.1:CDS
CAAAGAGCACATGGACATTG+CGG 0.663062 2:+75944858 MsaT010644.1:CDS
ACTGGATCGAAAGAAACATG+TGG 0.663241 2:+75944496 MsaT010644.1:CDS
TAATGACTACAAAGAGCACA+TGG 0.664831 2:+75944849 MsaT010644.1:CDS
TAAACATTACGACACAACGC+TGG 0.669639 2:+75943317 MsaT010644.1:CDS
TGGTGCGAGTCCCAATATGT+CGG 0.670798 2:-75944760 None:intergenic
AAGGACCGTAGACTAAGGAA+AGG 0.676015 2:+75947144 MsaT010644.1:CDS
TGATAGTGTTGAGGACGTTG+TGG 0.677130 2:+75943015 MsaT010644.1:CDS
ACCGCATGAAGTTGAGACAA+CGG 0.680018 2:-75944318 None:intergenic
CAAACACAACTAAAGGGCAA+TGG 0.680294 2:-75943772 None:intergenic
GAACTACATCTCGATGCGAG+GGG 0.681347 2:+75944227 MsaT010644.1:CDS
ATAATCAAATAGCAAGACAA+CGG 0.682137 2:+75943546 MsaT010644.1:CDS
TGTCCATCTACTCAGTACAA+GGG 0.684486 2:-75944695 None:intergenic
AGATTGGCCCAAGTTCGTGA+AGG 0.684958 2:+75947125 MsaT010644.1:CDS
GACAAACCTTGAAGATGACG+CGG 0.713712 2:+75944930 MsaT010644.1:CDS
CTTATCATAGACTGTGTGCG+TGG 0.715235 2:+75943981 MsaT010644.1:CDS
AAACCTTGAAGATGACGCGG+TGG 0.719654 2:+75944933 MsaT010644.1:CDS
TGGGCAACAGCACATATACG+TGG 0.756622 2:+75944184 MsaT010644.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 75942587 75947239 75942587 ID=MsaG010644
Chr2 mRNA 75942587 75947239 75942587 ID=MsaT010644.1;Parent=MsaG010644
Chr2 exon 75942587 75943338 75942587 ID=MsaT010644.1.exon1;Parent=MsaT010644.1
Chr2 CDS 75942587 75943338 75942587 ID=cds.MsaT010644.1;Parent=MsaT010644.1
Chr2 exon 75943379 75945108 75943379 ID=MsaT010644.1.exon2;Parent=MsaT010644.1
Chr2 CDS 75943379 75945108 75943379 ID=cds.MsaT010644.1;Parent=MsaT010644.1
Chr2 exon 75946034 75946081 75946034 ID=MsaT010644.1.exon3;Parent=MsaT010644.1
Chr2 CDS 75946034 75946081 75946034 ID=cds.MsaT010644.1;Parent=MsaT010644.1
Chr2 exon 75946546 75946779 75946546 ID=MsaT010644.1.exon4;Parent=MsaT010644.1
Chr2 CDS 75946546 75946779 75946546 ID=cds.MsaT010644.1;Parent=MsaT010644.1
Chr2 exon 75947067 75947239 75947067 ID=MsaT010644.1.exon5;Parent=MsaT010644.1
Chr2 CDS 75947067 75947239 75947067 ID=cds.MsaT010644.1;Parent=MsaT010644.1
Gene Sequence

>MsaT010644.1

ATGGGATACCGAGCTTTTGACTGTGAGCAATTTATTGGGCCTGAAAAAGGTGATGGAAGTCCCGAAGAAGGGGTAGACATTAGAGAATCTGAAGAAGAGGTTAGGGTTGAGGAGGGGGGATACAGTGGTAACATGGAATATGATGGAAGTGATTATGAAGGCGAAGACAATGTTGAGTTTGACGAAGATGGAGGTAGAGGGCAATCCGGAAACATTAGTGACTTTGATGAAGGGGTCAATTATGGTGACATGGAAGAAGATGGAAGTGATGAAGAAGGGGTAGACAATGCTGACATTGAAGACTATGGAAGTGATGAAGAAGGGGTAGACAATGCTGACATTGAAGACGATGGAAGTGATGCAGAAGGGGTAGACTATGGTGACATGGAAGAAGATGGAAGTCACAATGAAGACCACTATGTCCAAGTTGATAGTGTTGAGGACGTTGTGGCATTGGACCTAAGTGGTTTAGGGCCTCTATTTGTTAGGAGAATTGCGTTTGGAAGCCTAGACATTGCATATGAGTTCTATAAATCCTATGGAAGAGCGAATGGATTTTCAGTTCGCAAAGGCAAGTTGCTTTATTGCAAAACGGGAGAACTAGTGCAACGCACATTTGTTTGCCATAGACAAGGATATAGGGAAAAAAGAGGATTAAGTGAGGCGAATAGAAAGCGTAAGGAAAAACCTAATACTCGATGTGGATGTCAAGCTATGTTTCGGGTGCACATAAACATTACGACACAACGCTGTATCGCAGAACATTGTGGGTACTATCTTCACTGTGTAATGACAGATTCAGACATAATGCAAATGAACAATATGTTAAAAAGTGGTATTTTACCCAATCGCATATATGCTTCATTTGCAAATCAAGCAGGAGGATATGATAAAATTGGTTTCCGGAGGAAAGATCTGTATAATCAAATAGCAAGACAACGGCGTTTGCGAAAGTCAGATGCAAGTTCTGCATTAAGTTATCTTCGTGGATTGGCTGTAAATGATCCCATGATGTTTTTCAAGCACACTACTGATTCTACAGGTAGACTACAACACCTGTTTTGGTGTGACGGAAAAAGTCGTCTTGATTACCAAATTTATGGCGACGTAGTCGCATTTGATGCAACATATGGTAAGAACAAATACCATTGCCCTTTAGTTGTGTTTGCTGGTGTGAATAATCATAACTCTACTATTGTTTTTGGTGGAGCTATTGTTGCTGATGAGAAGGAAGAAACTTATGTCTGGGTGCTTTCACGGTTCTTGGAAGCAATGTCTGGAAAGTCGCCAACTGCTGTAATCACTGATGGTGATTTATCAATGAAGAATGCCATAAAACAAGTGTTTCCAAATGCTTATCATAGACTGTGTGCGTGGCACTTGATTCGCAATGCATCGTCCAACATAGGCGATCCTGCATTTGTGAATGAATTTAGAAAGTGTATGTTGGGCGACTATGAGATTGGAGAATTTTCCAGGAAGTGGGCTGAAAATGTTGATTCATTTGGATTGCATGACAACAATTGGATCAAAGAAACATATATGAATAGAAAGGCATGGGCAACAGCACATATACGTGGCCATTTTTTTGCAGGCTTCAGAACTACATCTCGATGCGAGGGGTTGCATTCAGAGATGGGGAAGTTTGTTCATTCTCGTTACAACTTGGCAGATTTTTTACTACACTATCACCGTTGTCTCAACTTCATGCGGTATAGAGAGGTCCAAGCAGACTTTGAAAGTGATTATGGTGAGCCTGTTCTCATTACAAGATTCCCTAAACTTGAGGTCTCTGGTGCGAAGGTATTTACGAAAGAGATATTTTGTAAATATCAGATGTTAATCAACCGATCTTCTGCCATGGTCGTAACTGGATCGAAAGAAACATGTGGGTACCACATTTATACTGTTAGTAAGTACAGGAGACCAGACCGGGAGTGGTGTGTATCATTTAACCCTTCAGAAGAAATTTTCAGGTGTGCTTGTCGGAGGATGGAGTCATTTGGAATTCCATGTGAGCATATCATTGCAGTTTTGGTTTTTACTGATTTTGCTGAGTTGCCTGAATCCCTTGTACTGAGTAGATGGACAAAGAATGCTAAGGATGTATTAGGTAGCATCTCAAATGGTCGTCCGACATATTGGGACTCGCACCATGCAACAAGATACGGAGCATTGATGTTTAGATGGGGGAGATTGTCTAAATTAGTCGTTGACAACGGTAATGACTACAAAGAGCACATGGACATTGCGGCTGCAGCTATTTTGAAAGCCGAACAAAAGAGAGGCATAAGTGATACCACGACAAACCTTGAAGATGACGCGGTGGACGAAAATTTGCAAAATCCAGCTTCTGTCAGAACCAAAGGTAGAGGTGGTGGTGTTGGTTCCACTAGTGGAACAAACAATAGGCGTGTCACCCATTGTTCTACATGTGGTGATCCTGGTCATAATAAGAAAACATGTCCTCAAAGAACGGTTGTTTTTTCTTCCAAATTTTTTTATTCTGAAAACCACATATCCTTATCAACGCAAAAGTATGATTATGGATGGATTAGGGATCCAAATGGCACCTGTGTACGAGTTAAGTTTGGGAGAAATTTAAGCCAAAATTTCATGACTTCTGGTAGGGACGTCGCAGCTAAATTCAACTGGGAGAAACCAACACGTGTTAGGCTTGAATATACTGGCGCTTTTAACGAGTTCAAGATGATGGTTTTGGTGGATGAAGTAGGAAGTTCAGGGAAATACAATCAAGGAAGAAAATATGAGTGCAAACTTATCACTTCAAATAGGGGTCCAAATGAGAAATACTTAGGTGAAGATTGGCCCAAGTTCGTGAAGGACCGTAGACTAAGGAAAGGTGATAAGTTGATATTTGATCTTTGTGCTCCTCCCAATCGTCTCTTTGTGGAGGTTGTCAAGCGTCGTCGTTAG

Protein sequence

>MsaT010644.1

MGYRAFDCEQFIGPEKGDGSPEEGVDIRESEEEVRVEEGGYSGNMEYDGSDYEGEDNVEFDEDGGRGQSGNISDFDEGVNYGDMEEDGSDEEGVDNADIEDYGSDEEGVDNADIEDDGSDAEGVDYGDMEEDGSHNEDHYVQVDSVEDVVALDLSGLGPLFVRRIAFGSLDIAYEFYKSYGRANGFSVRKGKLLYCKTGELVQRTFVCHRQGYREKRGLSEANRKRKEKPNTRCGCQAMFRVHINITTQRCIAEHCGYYLHCVMTDSDIMQMNNMLKSGILPNRIYASFANQAGGYDKIGFRRKDLYNQIARQRRLRKSDASSALSYLRGLAVNDPMMFFKHTTDSTGRLQHLFWCDGKSRLDYQIYGDVVAFDATYGKNKYHCPLVVFAGVNNHNSTIVFGGAIVADEKEETYVWVLSRFLEAMSGKSPTAVITDGDLSMKNAIKQVFPNAYHRLCAWHLIRNASSNIGDPAFVNEFRKCMLGDYEIGEFSRKWAENVDSFGLHDNNWIKETYMNRKAWATAHIRGHFFAGFRTTSRCEGLHSEMGKFVHSRYNLADFLLHYHRCLNFMRYREVQADFESDYGEPVLITRFPKLEVSGAKVFTKEIFCKYQMLINRSSAMVVTGSKETCGYHIYTVSKYRRPDREWCVSFNPSEEIFRCACRRMESFGIPCEHIIAVLVFTDFAELPESLVLSRWTKNAKDVLGSISNGRPTYWDSHHATRYGALMFRWGRLSKLVVDNGNDYKEHMDIAAAAILKAEQKRGISDTTTNLEDDAVDENLQNPASVRTKGRGGGVGSTSGTNNRRVTHCSTCGDPGHNKKTCPQRTVVFSSKFFYSENHISLSTQKYDYGWIRDPNGTCVRVKFGRNLSQNFMTSGRDVAAKFNWEKPTRVRLEYTGAFNEFKMMVLVDEVGSSGKYNQGRKYECKLITSNRGPNEKYLGEDWPKFVKDRRLRKGDKLIFDLCAPPNRLFVEVVKRRR*