AlfalfaGEDB | MsaG010678

M. sativa ssp. caerulea / MsaG010678

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010678	XP_003597326.2	97.034	236	7	0	1	236	1	236	1.98e-170	479

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010678	sp\|Q9LX82\|MYB48_ARATH	58.547	234	66	5	1	212	2	226	5.98e-83	251

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010678	tr\|G7IHL4\|G7IHL4_MEDTR	97.034	236	7	0	1	236	1	236	9.45e-171	479

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TFs/TRs:

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Gene ID	Type	Classification
MsaG010678	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000024	MsaG010678	0.887713	2.440236e-72	6.396172e-69
MsaG000117	MsaG010678	0.843351	2.757653e-58	1.197556e-55
MsaG000237	MsaG010678	0.829642	8.243258e-55	2.361402e-52
MsaG000309	MsaG010678	0.811484	1.173330e-50	2.077718e-48
MsaG000450	MsaG010678	0.807397	8.763011e-50	1.405535e-47
MsaG000534	MsaG010678	0.802377	9.699319e-49	1.384026e-46
MsaG000622	MsaG010678	0.823293	2.645125e-53	6.351900e-51
MsaG000760	MsaG010678	0.803238	6.452134e-49	9.390600e-47
MsaG001046	MsaG010678	0.819129	2.386897e-52	5.130636e-50
MsaG001200	MsaG010678	0.827636	2.504166e-54	6.778436e-52

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010678	MtrunA17_Chr2g0327821	97.034	236	7	0	1	236	1	236	1.82e-174	479
MsaG010678	MtrunA17_Chr4g0030881	56.226	265	68	9	1	233	2	250	1.26e-86	257
MsaG010678	MtrunA17_Chr1g0168661	64.286	112	40	0	1	112	16	127	2.12e-49	162
MsaG010678	MtrunA17_Chr1g0180391	64.151	106	38	0	6	111	19	124	2.86e-48	159
MsaG010678	MtrunA17_Chr1g0209661	61.468	109	42	0	3	111	24	132	1.98e-47	159
MsaG010678	MtrunA17_Chr1g0186061	62.264	106	40	0	7	112	21	126	3.54e-46	154
MsaG010678	MtrunA17_Chr1g0194301	59.633	109	44	0	6	114	33	141	6.76e-46	154
MsaG010678	MtrunA17_Chr7g0228231	60.577	104	41	0	5	108	13	116	3.04e-45	150
MsaG010678	MtrunA17_Chr6g0450101	60.577	104	41	0	5	108	13	116	5.61e-45	149
MsaG010678	MtrunA17_Chr1g0194291	58.716	109	45	0	6	114	21	129	1.80e-42	145

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010678	AT3G46130.1	58.547	234	66	5	1	212	4	228	5.33e-84	251
MsaG010678	AT5G59780.3	59.817	219	69	5	1	212	3	209	2.87e-81	243
MsaG010678	AT3G46130.3	54.545	198	59	5	37	212	8	196	3.83e-61	191
MsaG010678	AT3G46130.4	54.592	196	58	5	39	212	20	206	1.70e-60	190
MsaG010678	AT5G59780.2	55.801	181	61	5	39	212	20	188	4.68e-56	178
MsaG010678	AT3G53200.1	43.256	215	91	4	3	189	6	217	3.69e-50	164
MsaG010678	AT4G13480.1	65.766	111	38	0	1	111	1	111	5.83e-50	164
MsaG010678	AT3G24310.1	65.455	110	38	0	2	111	14	123	2.96e-49	162
MsaG010678	AT3G27810.1	50.355	141	67	2	2	139	16	156	5.51e-48	158
MsaG010678	AT3G30210.1	62.712	118	39	1	6	118	27	144	4.22e-47	157

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Find 52 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAGGGTCATCACTCAT+AGG	0.461038	2:+76458735	None:intergenic
AAATTTCAATGGATGATATA+TGG	0.321782	2:-76458920	MsaT010678.1:CDS
AACAAACCTATTTCCCCATT+TGG	0.293831	2:+76459372	None:intergenic
AAGAAGTACGAAAAGGACCA+TGG	0.640168	2:-76459698	MsaT010678.1:CDS
AAGATGGGACTTTATTGCTA+AGG	0.557083	2:-76459622	MsaT010678.1:CDS
AAGCTTGTGAATTCATTGCA+TGG	0.630600	2:+76459033	None:intergenic
AAGTCTTCTTGTTCTGTCCA+TGG	0.397521	2:+76459681	None:intergenic
ACAGATTCACTATGGGTGAT+GGG	0.576749	2:-76458786	MsaT010678.1:CDS
ACCAAAGACTTCTTCATCAT+GGG	0.486633	2:-76458820	MsaT010678.1:CDS
ACTTTCTTCTCCTGCCTCTT+TGG	0.272221	2:+76459010	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	76458713	76459730	76458713	ID=MsaG010678
Chr2	mRNA	76458713	76459730	76458713	ID=MsaT010678.1;Parent=MsaG010678
Chr2	exon	76458713	76459178	76458713	ID=MsaT010678.1.exon3;Parent=MsaT010678.1
Chr2	CDS	76458713	76459178	76458713	ID=cds.MsaT010678.1;Parent=MsaT010678.1
Chr2	exon	76459379	76459508	76459379	ID=MsaT010678.1.exon2;Parent=MsaT010678.1
Chr2	CDS	76459379	76459508	76459379	ID=cds.MsaT010678.1;Parent=MsaT010678.1
Chr2	exon	76459616	76459730	76459616	ID=MsaT010678.1.exon1;Parent=MsaT010678.1
Chr2	CDS	76459616	76459730	76459616	ID=cds.MsaT010678.1;Parent=MsaT010678.1

Gene Sequence

>MsaT010678.1

ATGGCTCAAGAAGAAGTACGAAAAGGACCATGGACAGAACAAGAAGACTTCAAATTGGTGTCATTTGTAGGATTATTTGGAGACAGAAGATGGGACTTTATTGCTAAGGTATCAGGTTTGAATAGAACAGGTAAGAGTTGTAGGTTAAGATGGGTTAATTACCTTCATCCTGGTCTCAAAAGAGGAAAGATGACACCTCATGAAGAACGCCTTGTCCTTGAGCTTCAATCCAAATGGGGAAATAGGTGGTCACGAATTGCTCGCAAGCTACCTGGACGAACGGATAATGAGATCAAGAATTATTGGAGAACTCACATGAGGAAGAAGGCTCAAGACAAAAAGAGAGGATCCATTCCATCCACAGAACACCATGCAATGAATTCACAAGCTTCCAAAGAGGCAGGAGAAGAAAGTTTTTATGACACAGGAGGATCATCAACTTCAACACAAGTTAAACTAGTAGGAGAAGAGCATGAACAAGAAATTTCAATGGATGATATATGGAAAGATATTGATCTATCAGAAGAGAATAGTCTACAGAATGAAGAGTGCTGCAATAATATTAATAACATATCTTGTTTACCAAAGACTTCTTCATCATGGGAGTATAATTCCACAGATTCACTATGGGTGATGGGTGAAGAAAGTATGTTATTCCCTATGGCTCCTATGAGTGATGACCCTTATTTTTCTGGCTATGCTAATTACTAA

Protein sequence

>MsaT010678.1

MAQEEVRKGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPHEERLVLELQSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQDKKRGSIPSTEHHAMNSQASKEAGEESFYDTGGSSTSTQVKLVGEEHEQEISMDDIWKDIDLSEENSLQNEECCNNINNISCLPKTSSSWEYNSTDSLWVMGEESMLFPMAPMSDDPYFSGYANY*