AlfalfaGEDB | MsaG010695

M. sativa ssp. caerulea / MsaG010695

KEGG: -
GO: -
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010695	XP_013465384.1	96.393	305	6	4	1	302	1	303	0.0	592

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010695	sp\|Q9M2U1\|DOF36_ARATH	39.498	319	157	14	1	290	1	312	1.06e-46	162

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010695	tr\|A0A072VBP4\|A0A072VBP4_MEDTR	96.393	305	6	4	1	302	1	303	0.0	592

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TFs/TRs:

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Gene ID	Type	Classification
MsaG010695	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010695	MtrunA17_Chr2g0328021	91.475	305	6	5	1	302	1	288	0.0	553
MsaG010695	MtrunA17_Chr4g0031411	43.099	355	119	17	1	296	1	331	6.65e-62	199
MsaG010695	MtrunA17_Chr4g0010151	40.549	328	108	17	1	261	1	308	1.22e-47	163
MsaG010695	MtrunA17_Chr7g0237921	37.818	275	115	6	1	238	1	256	2.59e-43	151
MsaG010695	MtrunA17_Chr7g0223311	52.500	160	45	5	1	146	1	143	6.47e-42	148
MsaG010695	MtrunA17_Chr8g0367161	56.000	100	41	1	55	154	12	108	4.33e-33	124
MsaG010695	MtrunA17_Chr8g0374251	62.069	87	29	1	78	164	68	150	1.70e-32	122
MsaG010695	MtrunA17_Chr3g0117601	52.475	101	48	0	28	128	11	111	2.25e-31	119
MsaG010695	MtrunA17_Chr4g0047001	68.919	74	18	1	79	147	56	129	2.64e-31	120
MsaG010695	MtrunA17_Chr8g0341671	76.119	67	14	1	73	139	15	79	7.10e-31	115

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010695	AT3G55370.1	39.498	319	157	14	1	290	1	312	1.08e-47	162
MsaG010695	AT3G55370.2	42.975	242	114	9	1	224	1	236	8.08e-46	158
MsaG010695	AT3G55370.3	37.742	310	158	13	9	290	55	357	5.11e-41	146
MsaG010695	AT2G37590.1	51.351	148	55	4	1	134	1	145	1.45e-40	144
MsaG010695	AT2G28810.1	48.408	157	41	4	1	129	1	145	1.03e-37	137
MsaG010695	AT5G65590.1	72.500	80	17	1	65	139	23	102	8.49e-35	128
MsaG010695	AT5G02460.1	56.303	119	35	2	39	157	73	174	1.28e-34	130
MsaG010695	AT2G28810.2	61.702	94	24	1	36	129	47	128	7.52e-34	126
MsaG010695	AT1G07640.1	73.611	72	18	1	64	135	8	78	2.24e-33	124
MsaG010695	AT5G60200.1	65.333	75	26	0	71	145	48	122	4.49e-33	122

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Find 73 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGTCTTGGTTGAGAC+AGG	0.461945	2:-76731359	None:intergenic
AAAGCTGTCTCTGAAGGTGG+TGG	0.586444	2:-76731279	None:intergenic
AAATCGGAACACAACGGAGG+AGG	0.573191	2:+76731843	MsaT010695.1:CDS
AAGGAGGAGTTGTGGATCAG+TGG	0.442180	2:+76731688	MsaT010695.1:CDS
AAGGTGGTGGTAACTTAGCT+TGG	0.577015	2:-76731266	None:intergenic
AATCTGAACCGGTTCGGTGT+TGG	0.507539	2:+76731618	MsaT010695.1:CDS
ACAACCATTACAATAATTCA+TGG	0.381419	2:+76731907	MsaT010695.1:CDS
ACATGTTTCCAACACCGAAC+CGG	0.484940	2:-76731626	None:intergenic
ACCGGATCAAGCTCAAGCTC+AGG	0.531426	2:+76731203	MsaT010695.1:CDS
AGAAATGTTCCTGTTGGTGG+AGG	0.558097	2:+76731423	MsaT010695.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	76730873	76731977	76730873	ID=MsaG010695
Chr2	mRNA	76730873	76731977	76730873	ID=MsaT010695.1;Parent=MsaG010695
Chr2	exon	76730873	76730923	76730873	ID=MsaT010695.1.exon1;Parent=MsaT010695.1
Chr2	CDS	76730873	76730923	76730873	ID=cds.MsaT010695.1;Parent=MsaT010695.1
Chr2	exon	76731120	76731977	76731120	ID=MsaT010695.1.exon2;Parent=MsaT010695.1
Chr2	CDS	76731120	76731977	76731120	ID=cds.MsaT010695.1;Parent=MsaT010695.1

Gene Sequence

>MsaT010695.1

ATGGTTTTCTCTTCTATTCCATCTTATTTAGATCCTCTCAATTGGCAGCAACAACCAAATCAACATCAGTTGCTTCCACCACTATCCTCATCACAGCCACATGGTGCAGGCTCAATTATCAGGCCCGGTTCGATACCGGATCAAGCTCAAGCTCAGGCAGCTCATGAAGTTCAAACTGGTCATCAGGTTCAAACTCACCAAGCTAAGTTACCACCACCTTCAGAGACAGCTTTGAAGTGTCCTCGTTGTGAATCAACCAACACAAAATTTTGTTACTACAACAACTATAACCTGTCTCAACCAAGACACTTTTGCAAGACATGTAGGCGTTATTGGACAAGAGGGGGTGCATTAAGAAATGTTCCTGTTGGTGGAGGGTGTCGTAGAAGCAAAAAGACCAAAAAGAGTAACACCTCTACTCCCTCAAAATCTCCAATATCAAATAGTAATGAGAAAGATTATTCAACAAGTGCAATCCATTCAACTTCAACTCCTCTTGGTGAATTCTTACACCCAACTAATAGACCTAATTACATGACATCTCTTCAGAATCTGAACCGGTTCGGTGTTGGAAACATGTTTCAAATTGGTGATTATAGTTCAAGTACTGGTGGAGGAGAAGGAGGAGTTGTGGATCAGTGGAGATTTCAGCAGTTTCCTTTCATGAATAATGGTTTTGATTCAAGTACTTCAAATGTTTCTTTCCCATTTCAAAGTGAAATTGTTGAACCAACAACTACTTCTAGGGTTACTACTTTGATGCCTGCATCGGTTAAATCGGAACACAACGGAGGAGGTTTTAATCTGCTTAGATCTCCAATGAATATGTCAGAGAATAACAACCATTACAATAATTCATGGACTGATTTTCATGGTCTTGCATCTTCTTCGGCTAGTCGTCTGTTATAA

Protein sequence

>MsaT010695.1

MVFSSIPSYLDPLNWQQQPNQHQLLPPLSSSQPHGAGSIIRPGSIPDQAQAQAAHEVQTGHQVQTHQAKLPPPSETALKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRSKKTKKSNTSTPSKSPISNSNEKDYSTSAIHSTSTPLGEFLHPTNRPNYMTSLQNLNRFGVGNMFQIGDYSSSTGGGEGGVVDQWRFQQFPFMNNGFDSSTSNVSFPFQSEIVEPTTTSRVTTLMPASVKSEHNGGGFNLLRSPMNMSENNNHYNNSWTDFHGLASSSASRLL*