Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010720 | XP_003597365.1 | 88.037 | 652 | 63 | 3 | 1 | 649 | 1 | 640 | 0.0 | 1138 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010720 | sp|P0C883|SCL33_ARATH | 41.094 | 640 | 333 | 10 | 50 | 648 | 57 | 693 | 3.84e-162 | 484 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010720 | tr|G7IHQ3|G7IHQ3_MEDTR | 88.037 | 652 | 63 | 3 | 1 | 649 | 1 | 640 | 0.0 | 1138 |
Gene ID | Type | Classification |
---|---|---|
MsaG010720 | TF | GRAS |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG010718 | MsaG010720 | 0.946215 | 2.187093e-104 | 3.583019e-99 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010720 | MtrunA17_Chr2g0328341 | 88.037 | 652 | 63 | 3 | 1 | 649 | 1 | 640 | 0.0 | 1138 |
MsaG010720 | MtrunA17_Chr2g0328381 | 81.763 | 658 | 96 | 5 | 1 | 649 | 1 | 643 | 0.0 | 1072 |
MsaG010720 | MtrunA17_Chr2g0328361 | 77.370 | 654 | 106 | 6 | 1 | 649 | 1 | 617 | 0.0 | 988 |
MsaG010720 | MtrunA17_Chr4g0031721 | 47.776 | 697 | 282 | 13 | 21 | 649 | 4 | 686 | 0.0 | 585 |
MsaG010720 | MtrunA17_Chr2g0328371 | 90.079 | 252 | 25 | 0 | 351 | 602 | 1 | 252 | 2.98e-170 | 485 |
MsaG010720 | MtrunA17_Chr4g0031701 | 42.326 | 619 | 324 | 13 | 46 | 649 | 28 | 628 | 4.93e-157 | 466 |
MsaG010720 | MtrunA17_Chr7g0238891 | 38.270 | 682 | 335 | 14 | 46 | 649 | 69 | 742 | 2.97e-155 | 465 |
MsaG010720 | MtrunA17_Chr4g0031731 | 41.613 | 620 | 327 | 13 | 46 | 649 | 28 | 628 | 3.53e-153 | 456 |
MsaG010720 | MtrunA17_Chr4g0031711 | 50.000 | 450 | 202 | 9 | 219 | 649 | 290 | 735 | 1.44e-150 | 453 |
MsaG010720 | MtrunA17_Chr4g0031741 | 48.090 | 445 | 206 | 6 | 225 | 649 | 213 | 652 | 4.24e-144 | 434 |
MsaG010720 | MtrunA17_Chr2g0328431 | 38.629 | 642 | 316 | 17 | 50 | 649 | 51 | 656 | 2.14e-140 | 424 |
MsaG010720 | MtrunA17_Chr2g0328411 | 38.328 | 634 | 325 | 15 | 50 | 647 | 51 | 654 | 7.99e-140 | 424 |
MsaG010720 | MtrunA17_Chr2g0328401 | 36.650 | 603 | 329 | 15 | 54 | 626 | 55 | 634 | 1.82e-127 | 390 |
MsaG010720 | MtrunA17_Chr5g0447691 | 30.400 | 375 | 252 | 4 | 277 | 646 | 173 | 543 | 3.03e-59 | 207 |
MsaG010720 | MtrunA17_Chr2g0290241 | 30.026 | 383 | 257 | 5 | 272 | 646 | 45 | 424 | 2.01e-57 | 200 |
MsaG010720 | MtrunA17_Chr3g0101141 | 29.278 | 526 | 326 | 16 | 146 | 646 | 37 | 541 | 3.97e-57 | 202 |
MsaG010720 | MtrunA17_Chr4g0076091 | 30.423 | 378 | 253 | 6 | 276 | 647 | 170 | 543 | 2.00e-56 | 200 |
MsaG010720 | MtrunA17_Chr7g0224271 | 30.435 | 391 | 239 | 7 | 276 | 646 | 295 | 672 | 6.58e-55 | 198 |
MsaG010720 | MtrunA17_Chr2g0319091 | 30.481 | 374 | 253 | 3 | 277 | 646 | 208 | 578 | 9.06e-55 | 196 |
MsaG010720 | MtrunA17_Chr5g0445331 | 30.184 | 381 | 249 | 8 | 277 | 646 | 157 | 531 | 2.02e-52 | 189 |
MsaG010720 | MtrunA17_Chr3g0125811 | 29.459 | 370 | 254 | 3 | 281 | 646 | 203 | 569 | 3.43e-52 | 189 |
MsaG010720 | MtrunA17_Chr1g0159461 | 29.189 | 370 | 255 | 3 | 281 | 646 | 225 | 591 | 3.79e-51 | 186 |
MsaG010720 | MtrunA17_Chr8g0357601 | 27.737 | 411 | 266 | 9 | 258 | 649 | 156 | 554 | 1.54e-47 | 176 |
MsaG010720 | MtrunA17_Chr3g0110971 | 29.847 | 392 | 245 | 8 | 271 | 646 | 209 | 586 | 2.90e-46 | 173 |
MsaG010720 | MtrunA17_Chr8g0376381 | 28.609 | 381 | 249 | 7 | 271 | 646 | 159 | 521 | 3.98e-46 | 171 |
MsaG010720 | MtrunA17_Chr7g0245601 | 31.233 | 365 | 237 | 8 | 285 | 648 | 442 | 793 | 6.40e-46 | 174 |
MsaG010720 | MtrunA17_Chr2g0306641 | 31.152 | 382 | 243 | 9 | 273 | 646 | 117 | 486 | 7.16e-45 | 167 |
MsaG010720 | MtrunA17_Chr4g0057891 | 26.963 | 382 | 258 | 8 | 278 | 646 | 146 | 519 | 1.12e-44 | 167 |
MsaG010720 | MtrunA17_Chr4g0057291 | 26.042 | 384 | 264 | 8 | 277 | 648 | 288 | 663 | 5.38e-43 | 164 |
MsaG010720 | MtrunA17_Chr5g0396491 | 25.850 | 441 | 261 | 9 | 267 | 646 | 42 | 477 | 7.62e-41 | 155 |
MsaG010720 | MtrunA17_Chr3g0085681 | 26.253 | 419 | 246 | 8 | 282 | 646 | 26 | 435 | 5.50e-39 | 149 |
MsaG010720 | MtrunA17_Chr1g0183641 | 27.556 | 450 | 296 | 14 | 208 | 646 | 46 | 476 | 6.22e-35 | 138 |
MsaG010720 | MtrunA17_Chr2g0294461 | 25.773 | 388 | 269 | 7 | 273 | 646 | 202 | 584 | 8.42e-35 | 139 |
MsaG010720 | MtrunA17_Chr4g0038761 | 28.610 | 374 | 241 | 10 | 285 | 649 | 88 | 444 | 2.25e-34 | 136 |
MsaG010720 | MtrunA17_Chr4g0039661 | 27.419 | 372 | 244 | 9 | 286 | 646 | 198 | 554 | 9.31e-34 | 136 |
MsaG010720 | MtrunA17_Chr2g0294471 | 24.611 | 386 | 273 | 7 | 273 | 646 | 196 | 575 | 3.10e-31 | 129 |
MsaG010720 | MtrunA17_Chr1g0200401 | 27.456 | 397 | 239 | 14 | 281 | 646 | 80 | 458 | 1.03e-29 | 122 |
MsaG010720 | MtrunA17_Chr5g0401131 | 24.870 | 386 | 264 | 11 | 281 | 648 | 114 | 491 | 1.19e-29 | 123 |
MsaG010720 | MtrunA17_Chr7g0270031 | 25.330 | 379 | 266 | 9 | 276 | 646 | 184 | 553 | 3.53e-29 | 122 |
MsaG010720 | MtrunA17_Chr4g0038851 | 27.481 | 262 | 175 | 5 | 266 | 520 | 33 | 286 | 1.68e-27 | 116 |
MsaG010720 | MtrunA17_Chr7g0236851 | 26.736 | 288 | 200 | 5 | 366 | 647 | 375 | 657 | 1.59e-26 | 115 |
MsaG010720 | MtrunA17_Chr3g0085361 | 25.490 | 357 | 201 | 9 | 344 | 646 | 4 | 349 | 6.55e-25 | 106 |
MsaG010720 | MtrunA17_Chr6g0468561 | 25.199 | 377 | 259 | 8 | 282 | 646 | 296 | 661 | 9.06e-25 | 109 |
MsaG010720 | MtrunA17_Chr1g0194621 | 25.000 | 392 | 258 | 15 | 276 | 646 | 141 | 517 | 2.78e-24 | 107 |
MsaG010720 | MtrunA17_Chr3g0114841 | 24.439 | 401 | 259 | 13 | 276 | 647 | 115 | 500 | 3.49e-24 | 106 |
MsaG010720 | MtrunA17_Chr5g0424131 | 24.882 | 422 | 278 | 13 | 246 | 647 | 97 | 499 | 6.80e-24 | 105 |
MsaG010720 | MtrunA17_Chr2g0329591 | 26.276 | 392 | 256 | 11 | 279 | 648 | 72 | 452 | 7.77e-23 | 102 |
MsaG010720 | MtrunA17_Chr4g0053901 | 22.803 | 421 | 270 | 11 | 278 | 649 | 56 | 470 | 1.47e-22 | 101 |
MsaG010720 | MtrunA17_Chr5g0401421 | 21.596 | 426 | 271 | 10 | 278 | 649 | 32 | 448 | 7.08e-22 | 99.0 |
MsaG010720 | MtrunA17_Chr8g0383981 | 24.505 | 404 | 262 | 16 | 267 | 649 | 117 | 498 | 6.35e-20 | 93.6 |
MsaG010720 | MtrunA17_Chr4g0012071 | 23.989 | 371 | 251 | 12 | 286 | 646 | 201 | 550 | 5.19e-17 | 84.7 |
MsaG010720 | MtrunA17_Chr7g0230771 | 23.885 | 381 | 248 | 12 | 282 | 646 | 376 | 730 | 1.83e-16 | 83.6 |
MsaG010720 | MtrunA17_Chr7g0230731 | 23.885 | 381 | 248 | 12 | 282 | 646 | 373 | 727 | 1.86e-15 | 80.1 |
MsaG010720 | MtrunA17_Chr8g0344101 | 23.030 | 495 | 305 | 18 | 195 | 646 | 138 | 599 | 3.87e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010720 | AT2G29060.1 | 41.094 | 640 | 333 | 10 | 50 | 648 | 57 | 693 | 3.90e-163 | 484 |
MsaG010720 | AT2G29060.2 | 41.680 | 619 | 322 | 10 | 50 | 648 | 57 | 656 | 1.38e-162 | 481 |
MsaG010720 | AT1G07530.1 | 51.068 | 468 | 205 | 9 | 201 | 649 | 305 | 767 | 5.33e-161 | 481 |
MsaG010720 | AT2G29065.1 | 41.894 | 623 | 313 | 18 | 50 | 649 | 34 | 630 | 1.34e-141 | 427 |
MsaG010720 | AT1G07520.2 | 48.764 | 445 | 207 | 10 | 219 | 649 | 94 | 531 | 3.29e-141 | 422 |
MsaG010720 | AT1G07520.4 | 48.764 | 445 | 207 | 10 | 219 | 649 | 94 | 531 | 3.29e-141 | 422 |
MsaG010720 | AT1G07520.1 | 48.764 | 445 | 207 | 10 | 219 | 649 | 258 | 695 | 6.02e-140 | 424 |
MsaG010720 | AT1G07520.3 | 48.764 | 445 | 207 | 10 | 219 | 649 | 259 | 696 | 6.06e-140 | 424 |
MsaG010720 | AT2G37650.2 | 47.105 | 380 | 193 | 4 | 273 | 648 | 327 | 702 | 9.97e-123 | 380 |
MsaG010720 | AT2G37650.1 | 47.105 | 380 | 193 | 4 | 273 | 648 | 339 | 714 | 1.00e-122 | 381 |
MsaG010720 | AT5G59450.1 | 34.584 | 613 | 320 | 10 | 49 | 649 | 57 | 600 | 3.00e-115 | 358 |
MsaG010720 | AT3G46600.3 | 41.972 | 436 | 241 | 6 | 219 | 649 | 121 | 549 | 1.15e-113 | 352 |
MsaG010720 | AT3G46600.1 | 41.972 | 436 | 241 | 6 | 219 | 649 | 153 | 581 | 2.02e-113 | 352 |
MsaG010720 | AT3G46600.2 | 44.681 | 376 | 201 | 4 | 278 | 649 | 1 | 373 | 2.08e-111 | 340 |
MsaG010720 | AT5G48150.1 | 31.888 | 392 | 259 | 5 | 260 | 646 | 101 | 489 | 3.32e-61 | 212 |
MsaG010720 | AT5G48150.4 | 31.888 | 392 | 259 | 5 | 260 | 646 | 101 | 489 | 3.32e-61 | 212 |
MsaG010720 | AT5G48150.2 | 31.888 | 392 | 259 | 5 | 260 | 646 | 101 | 489 | 3.32e-61 | 212 |
MsaG010720 | AT5G48150.3 | 31.888 | 392 | 259 | 5 | 260 | 646 | 101 | 489 | 3.32e-61 | 212 |
MsaG010720 | AT2G04890.1 | 31.081 | 370 | 249 | 3 | 277 | 646 | 49 | 412 | 1.30e-60 | 208 |
MsaG010720 | AT1G50600.3 | 30.941 | 404 | 255 | 6 | 261 | 646 | 128 | 525 | 5.09e-58 | 204 |
MsaG010720 | AT1G50600.1 | 30.941 | 404 | 255 | 6 | 261 | 646 | 199 | 596 | 9.30e-58 | 205 |
MsaG010720 | AT1G50600.2 | 30.941 | 404 | 255 | 6 | 261 | 646 | 203 | 600 | 1.35e-57 | 205 |
MsaG010720 | AT1G21450.1 | 29.199 | 387 | 257 | 8 | 271 | 646 | 212 | 592 | 1.43e-49 | 182 |
MsaG010720 | AT3G54220.1 | 31.579 | 399 | 250 | 10 | 257 | 648 | 269 | 651 | 4.75e-48 | 179 |
MsaG010720 | AT1G66350.1 | 30.829 | 386 | 232 | 11 | 271 | 646 | 145 | 505 | 1.03e-47 | 176 |
MsaG010720 | AT3G03450.1 | 27.792 | 385 | 256 | 8 | 271 | 646 | 173 | 544 | 1.06e-45 | 171 |
MsaG010720 | AT2G01570.1 | 29.016 | 386 | 245 | 10 | 271 | 646 | 214 | 580 | 1.65e-45 | 171 |
MsaG010720 | AT4G17230.1 | 28.382 | 377 | 263 | 3 | 276 | 648 | 153 | 526 | 1.78e-45 | 170 |
MsaG010720 | AT4G17230.2 | 28.382 | 377 | 263 | 3 | 276 | 648 | 153 | 526 | 1.78e-45 | 170 |
MsaG010720 | AT1G14920.1 | 27.749 | 382 | 255 | 7 | 271 | 646 | 162 | 528 | 2.20e-44 | 167 |
MsaG010720 | AT5G17490.1 | 25.995 | 377 | 263 | 7 | 273 | 646 | 152 | 515 | 8.60e-43 | 162 |
MsaG010720 | AT5G66770.1 | 29.947 | 374 | 236 | 11 | 285 | 646 | 224 | 583 | 1.23e-36 | 145 |
MsaG010720 | AT1G50420.1 | 22.833 | 473 | 292 | 11 | 241 | 646 | 12 | 478 | 1.07e-35 | 141 |
MsaG010720 | AT1G63100.1 | 28.531 | 354 | 232 | 9 | 277 | 621 | 248 | 589 | 8.51e-35 | 140 |
MsaG010720 | AT1G63100.2 | 28.531 | 354 | 232 | 9 | 277 | 621 | 273 | 614 | 9.77e-35 | 140 |
MsaG010720 | AT5G41920.1 | 29.870 | 385 | 233 | 14 | 276 | 646 | 38 | 399 | 1.75e-34 | 136 |
MsaG010720 | AT4G37650.1 | 25.833 | 360 | 233 | 9 | 280 | 614 | 145 | 495 | 2.66e-33 | 135 |
MsaG010720 | AT3G50650.1 | 27.424 | 361 | 233 | 9 | 301 | 646 | 195 | 541 | 4.34e-32 | 131 |
MsaG010720 | AT3G49950.1 | 26.276 | 392 | 259 | 9 | 278 | 648 | 27 | 409 | 6.63e-30 | 122 |
MsaG010720 | AT1G55580.1 | 25.240 | 416 | 252 | 12 | 278 | 646 | 41 | 444 | 7.06e-26 | 111 |
MsaG010720 | AT4G08250.1 | 25.485 | 361 | 243 | 12 | 300 | 646 | 128 | 476 | 2.65e-25 | 110 |
MsaG010720 | AT5G52510.1 | 24.093 | 386 | 257 | 9 | 282 | 646 | 269 | 639 | 5.55e-25 | 110 |
MsaG010720 | AT3G13840.1 | 23.238 | 383 | 256 | 11 | 281 | 646 | 148 | 509 | 7.30e-13 | 72.0 |
Find 108 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTAATCTGATTTAATATT+TGG | 0.081879 | 2:-77045380 | None:intergenic |
TTCTATTTGGTTCTTCTTGC+TGG | 0.149493 | 2:+77046402 | MsaT010720.1:CDS |
TTCACTCTCTCCATTGAATT+TGG | 0.151096 | 2:-77045756 | None:intergenic |
AGTCTTCACATTATAGATTT+TGG | 0.160984 | 2:+77045639 | MsaT010720.1:CDS |
AATCTTCTTCCATGAGAAAT+TGG | 0.197500 | 2:-77044660 | None:intergenic |
TATCCCTGTGATCTTCAATT+TGG | 0.207790 | 2:-77045727 | None:intergenic |
GAATTCTCTTCAACTGTTCT+TGG | 0.222104 | 2:+77044532 | MsaT010720.1:CDS |
TGGGTTTAAGTCTTTGAAAT+TGG | 0.243482 | 2:+77046268 | MsaT010720.1:CDS |
TTTATTCATAGCATTGTTAA+TGG | 0.246687 | 2:+77046014 | MsaT010720.1:CDS |
CAAAGATTGACACATTTCTT+TGG | 0.253475 | 2:+77045432 | MsaT010720.1:CDS |
GAATCCGAAGGGTGCTGTTT+TGG | 0.259645 | 2:+77045962 | MsaT010720.1:CDS |
TGAAATATCATTACAAGAAA+TGG | 0.276552 | 2:-77045349 | None:intergenic |
TTATTTGATAAATTACTTCT+TGG | 0.283709 | 2:+77045183 | MsaT010720.1:CDS |
CATATAGGCATTGGCATTCT+AGG | 0.286084 | 2:+77046234 | MsaT010720.1:CDS |
CCAAATATTAAATCAGATTA+AGG | 0.286177 | 2:+77045380 | MsaT010720.1:CDS |
TAGTTGTATGAGTCTATAAT+TGG | 0.294656 | 2:-77044961 | None:intergenic |
ATTCACTCTTACTTTGTTCA+TGG | 0.301028 | 2:-77044513 | None:intergenic |
TGATGTTTGAGGAAGTGTTT+TGG | 0.302555 | 2:+77046150 | MsaT010720.1:CDS |
TGTTTGAGGTGAAGGAAAAT+TGG | 0.305166 | 2:+77046354 | MsaT010720.1:CDS |
TGGAAGGGTAGAATTCTATT+TGG | 0.313548 | 2:+77046389 | MsaT010720.1:CDS |
GGAGGGAATGGAAGAGTAGT+TGG | 0.316336 | 2:-77045006 | None:intergenic |
CATTCTAGGCACGTGGGAAA+TGG | 0.320991 | 2:+77046248 | MsaT010720.1:CDS |
ATCCCTGTGATCTTCAATTT+GGG | 0.345121 | 2:-77045726 | None:intergenic |
AGAGTAGTTGGGAGTAGAAA+AGG | 0.358921 | 2:-77044994 | None:intergenic |
TCCTCAAACATCAACCTATT+AGG | 0.361937 | 2:-77046140 | None:intergenic |
GAGTGAATGAAGCAGGTCTT+AGG | 0.373688 | 2:+77045772 | MsaT010720.1:CDS |
TCTATTTGGTTCTTCTTGCT+GGG | 0.374895 | 2:+77046403 | MsaT010720.1:CDS |
CATTATTGAAAGAAGGGAAA+AGG | 0.380669 | 2:-77045059 | None:intergenic |
ATGCTATGAATAAATATATT+CGG | 0.399119 | 2:-77046005 | None:intergenic |
GCAATACAATTGAACTCAAA+AGG | 0.401581 | 2:-77045825 | None:intergenic |
GTTGAAGAGCATAGGAATCT+TGG | 0.409119 | 2:-77044705 | None:intergenic |
TTGAGAGGCCAGAGACATAT+AGG | 0.413255 | 2:+77046219 | MsaT010720.1:CDS |
AGAAGGGAAAAGGGTTGGAT+TGG | 0.418599 | 2:-77045049 | None:intergenic |
TATAATTGGATCAAGTTCAT+AGG | 0.422425 | 2:-77044947 | None:intergenic |
GAAAGAGCATTATTGAAAGA+AGG | 0.427798 | 2:-77045066 | None:intergenic |
GTGAACGTGAGGATCCTAAT+AGG | 0.434511 | 2:+77046126 | MsaT010720.1:CDS |
ACTCTTCATGTTCATTGTGT+TGG | 0.439658 | 2:-77044612 | None:intergenic |
AAGGAACATTCTTCTCCAAC+AGG | 0.441908 | 2:+77045399 | MsaT010720.1:CDS |
AAAGAGCATTATTGAAAGAA+GGG | 0.443472 | 2:-77045065 | None:intergenic |
ACTCGATGAGACAGTAGTTT+CGG | 0.444774 | 2:+77045938 | MsaT010720.1:CDS |
AGACGAAGAAGAGGAAGAAG+AGG | 0.446816 | 2:-77044815 | None:intergenic |
TTGAAAGAAGGGAAAAGGGT+TGG | 0.454471 | 2:-77045054 | None:intergenic |
CTTTGAGTTCCATCACCTGT+TGG | 0.456885 | 2:-77045414 | None:intergenic |
GATAGATCTTCCAAATTCAA+TGG | 0.460382 | 2:+77045746 | MsaT010720.1:CDS |
TAGGAGAAAGAGAAGTTATG+AGG | 0.463600 | 2:+77045284 | MsaT010720.1:CDS |
ATTCTAGGCACGTGGGAAAT+GGG | 0.464304 | 2:+77046249 | MsaT010720.1:CDS |
AGAATAAGAAGACGAAGAAG+AGG | 0.467187 | 2:-77044824 | None:intergenic |
GAGTAGTTGGGAGTAGAAAA+GGG | 0.473309 | 2:-77044993 | None:intergenic |
GAAGCACGTTTAGCAGGAAC+TGG | 0.473702 | 2:+77045465 | MsaT010720.1:CDS |
TCCTAATAGGTTGATGTTTG+AGG | 0.474185 | 2:+77046139 | MsaT010720.1:CDS |
GAGGGAATGGAAGAGTAGTT+GGG | 0.474502 | 2:-77045005 | None:intergenic |
ATTATTGAAAGAAGGGAAAA+GGG | 0.478667 | 2:-77045058 | None:intergenic |
GAAGAGTCTTCCAATGCTCT+TGG | 0.479029 | 2:+77044628 | MsaT010720.1:CDS |
GAGAAGTTATGAGGAAGTTG+TGG | 0.483254 | 2:+77045293 | MsaT010720.1:CDS |
TGCCAATGCCTATATGTCTC+TGG | 0.483967 | 2:-77046227 | None:intergenic |
TAGCCTCTGAAGGTTGTGAC+AGG | 0.486539 | 2:+77046195 | MsaT010720.1:CDS |
GCAGTAGCAGCAGTAGGAGG+AGG | 0.489711 | 2:-77044763 | None:intergenic |
GCAGATTATAGATAAATTGA+AGG | 0.495433 | 2:+77046295 | MsaT010720.1:CDS |
GACGAAGAAGAGGAAGAAGA+GGG | 0.495930 | 2:-77044814 | None:intergenic |
GCAGCAGCAGTAGCAGCAGT+AGG | 0.498059 | 2:-77044769 | None:intergenic |
GAAGAATTATCAAACAGATT+CGG | 0.502364 | 2:+77045255 | MsaT010720.1:CDS |
AAATTATAATCACTGAAGCT+AGG | 0.502389 | 2:-77044904 | None:intergenic |
CCACCCAAATTGAAGATCAC+AGG | 0.507118 | 2:+77045723 | MsaT010720.1:CDS |
AAAATTGGATGCTACAAGGT+TGG | 0.509330 | 2:+77046369 | MsaT010720.1:CDS |
AAAATGTGATTAGGAGGGAA+TGG | 0.510292 | 2:-77045018 | None:intergenic |
CTTCAATTTGGGTGGCCCAC+CGG | 0.513811 | 2:-77045715 | None:intergenic |
CATATTGTGAAGGTCTATGC+TGG | 0.514011 | 2:-77046428 | None:intergenic |
GTTGATATAACCAAGAGCAT+TGG | 0.514520 | 2:-77044638 | None:intergenic |
CATTCTTCTCCAACAGGTGA+TGG | 0.515669 | 2:+77045405 | MsaT010720.1:CDS |
GCACTCGAAGCACGTTTAGC+AGG | 0.522176 | 2:+77045459 | MsaT010720.1:CDS |
GGCCAGAGACATATAGGCAT+TGG | 0.526736 | 2:+77046225 | MsaT010720.1:CDS |
GGAAGAAGAGGGAAGAGTAG+TGG | 0.529525 | 2:-77044803 | None:intergenic |
TTATATCAACCAATTTCTCA+TGG | 0.530130 | 2:+77044651 | MsaT010720.1:CDS |
AAATCCAAAACAGCACCCTT+CGG | 0.534191 | 2:-77045966 | None:intergenic |
CACCGTCTATCGAAAAGATC+CGG | 0.539937 | 2:+77045696 | MsaT010720.1:CDS |
CTTGGTACTAAAGTCGCAAA+AGG | 0.541250 | 2:+77045201 | MsaT010720.1:CDS |
CAATAATGCTCTTTCTCACG+AGG | 0.541791 | 2:+77045074 | MsaT010720.1:CDS |
GGCATGCTGATGAATAAACT+TGG | 0.547453 | 2:-77045551 | None:intergenic |
TTGGATGCTACAAGGTTGGA+AGG | 0.548278 | 2:+77046373 | MsaT010720.1:CDS |
TTGGGAAAGTATCAAAGTTG+AGG | 0.550259 | 2:+77045854 | MsaT010720.1:CDS |
CAGATTATAGATAAATTGAA+GGG | 0.550818 | 2:+77046296 | MsaT010720.1:CDS |
ATGGAGAGAGTGAATGAAGC+AGG | 0.553640 | 2:+77045765 | MsaT010720.1:CDS |
TTATAGATAAATTGAAGGGT+AGG | 0.554979 | 2:+77046300 | MsaT010720.1:CDS |
AATTATAATCACTGAAGCTA+GGG | 0.560160 | 2:-77044903 | None:intergenic |
AACCCTGTCACAACCTTCAG+AGG | 0.560545 | 2:-77046198 | None:intergenic |
CCTGTGATCTTCAATTTGGG+TGG | 0.565831 | 2:-77045723 | None:intergenic |
GATAGACGGTGTATAAAAGC+AGG | 0.571505 | 2:-77045684 | None:intergenic |
GCAGCAGTAGCAGCAGTAGG+AGG | 0.573244 | 2:-77044766 | None:intergenic |
AGTGATTATAATTTCAGCAG+TGG | 0.578633 | 2:+77044913 | MsaT010720.1:CDS |
GAATTATCAAACAGATTCGG+TGG | 0.598197 | 2:+77045258 | MsaT010720.1:CDS |
CACCCAAATTGAAGATCACA+GGG | 0.598988 | 2:+77045724 | MsaT010720.1:CDS |
CTCAGTAAGTTGAAGAGCAT+AGG | 0.600415 | 2:-77044713 | None:intergenic |
AAGGTTGTGACAGGGTTGAG+AGG | 0.603768 | 2:+77046204 | MsaT010720.1:CDS |
ATGAATGTTATAGCCTCTGA+AGG | 0.605131 | 2:+77046185 | MsaT010720.1:CDS |
CAGTAGCAGCAGTAGGAGGA+GGG | 0.605945 | 2:-77044762 | None:intergenic |
AAGGAAAATTGGATGCTACA+AGG | 0.606455 | 2:+77046365 | MsaT010720.1:CDS |
GTTATCAAGCGTATCAAACA+AGG | 0.610647 | 2:-77046096 | None:intergenic |
GTGTTGGTTATGGTTTCAAG+TGG | 0.612035 | 2:+77045661 | MsaT010720.1:CDS |
AGTAGTTTCGGAGAATCCGA+AGG | 0.616125 | 2:+77045950 | MsaT010720.1:CDS |
ATTCATAGCATTGTTAATGG+CGG | 0.619293 | 2:+77046017 | MsaT010720.1:CDS |
CGTCTATCGAAAAGATCCGG+TGG | 0.631429 | 2:+77045699 | MsaT010720.1:CDS |
GTCTATCGAAAAGATCCGGT+GGG | 0.632717 | 2:+77045700 | MsaT010720.1:CDS |
AGCCTCTGAAGGTTGTGACA+GGG | 0.632967 | 2:+77046196 | MsaT010720.1:CDS |
TGGATGCTACAAGGTTGGAA+GGG | 0.641743 | 2:+77046374 | MsaT010720.1:CDS |
GCATTGGCATTCTAGGCACG+TGG | 0.643333 | 2:+77046241 | MsaT010720.1:CDS |
TAACAACAATAGTGAACGTG+AGG | 0.667397 | 2:+77046115 | MsaT010720.1:CDS |
CATTGGCATTCTAGGCACGT+GGG | 0.682240 | 2:+77046242 | MsaT010720.1:CDS |
GTAGTTTCGGAGAATCCGAA+GGG | 0.706195 | 2:+77045951 | MsaT010720.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 77044487 | 77046436 | 77044487 | ID=MsaG010720 |
Chr2 | mRNA | 77044487 | 77046436 | 77044487 | ID=MsaT010720.1;Parent=MsaG010720 |
Chr2 | exon | 77044487 | 77046436 | 77044487 | ID=MsaT010720.1.exon1;Parent=MsaT010720.1 |
Chr2 | CDS | 77044487 | 77046436 | 77044487 | ID=cds.MsaT010720.1;Parent=MsaT010720.1 |
Gene Sequence |
Protein sequence |