Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010721 | AES67618.1 | 91.121 | 642 | 57 | 0 | 1 | 642 | 1 | 642 | 0.0 | 1159 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010721 | sp|P0C883|SCL33_ARATH | 42.006 | 638 | 323 | 10 | 50 | 641 | 57 | 693 | 1.73e-167 | 498 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010721 | tr|G7IHQ5|G7IHQ5_MEDTR | 91.121 | 642 | 57 | 0 | 1 | 642 | 1 | 642 | 0.0 | 1159 |
Gene ID | Type | Classification |
---|---|---|
MsaG010721 | TF | GRAS |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010721 | MtrunA17_Chr2g0328361 | 87.383 | 642 | 56 | 1 | 1 | 642 | 1 | 617 | 0.0 | 1092 |
MsaG010721 | MtrunA17_Chr2g0328381 | 83.564 | 651 | 90 | 4 | 1 | 642 | 1 | 643 | 0.0 | 1073 |
MsaG010721 | MtrunA17_Chr2g0328341 | 83.282 | 652 | 87 | 6 | 1 | 642 | 1 | 640 | 0.0 | 1067 |
MsaG010721 | MtrunA17_Chr4g0031721 | 60.135 | 444 | 164 | 6 | 209 | 642 | 246 | 686 | 0.0 | 552 |
MsaG010721 | MtrunA17_Chr2g0328371 | 85.317 | 252 | 37 | 0 | 344 | 595 | 1 | 252 | 5.69e-161 | 461 |
MsaG010721 | MtrunA17_Chr2g0328391 | 44.156 | 616 | 320 | 12 | 46 | 642 | 61 | 671 | 7.06e-161 | 477 |
MsaG010721 | MtrunA17_Chr4g0031701 | 42.345 | 614 | 324 | 13 | 46 | 642 | 28 | 628 | 1.36e-155 | 462 |
MsaG010721 | MtrunA17_Chr7g0238891 | 50.120 | 417 | 197 | 5 | 230 | 642 | 333 | 742 | 7.99e-151 | 454 |
MsaG010721 | MtrunA17_Chr4g0031731 | 41.491 | 617 | 325 | 13 | 46 | 642 | 28 | 628 | 8.61e-151 | 449 |
MsaG010721 | MtrunA17_Chr4g0031711 | 50.000 | 442 | 199 | 9 | 218 | 642 | 299 | 735 | 1.68e-148 | 447 |
MsaG010721 | MtrunA17_Chr2g0328411 | 37.660 | 624 | 336 | 13 | 50 | 640 | 51 | 654 | 9.07e-141 | 426 |
MsaG010721 | MtrunA17_Chr4g0031741 | 45.987 | 461 | 222 | 7 | 202 | 642 | 199 | 652 | 2.34e-140 | 424 |
MsaG010721 | MtrunA17_Chr2g0328431 | 38.462 | 624 | 335 | 13 | 50 | 642 | 51 | 656 | 4.51e-139 | 421 |
MsaG010721 | MtrunA17_Chr2g0328401 | 36.755 | 604 | 322 | 13 | 54 | 620 | 55 | 635 | 2.24e-126 | 387 |
MsaG010721 | MtrunA17_Chr5g0447691 | 31.467 | 375 | 248 | 4 | 270 | 639 | 173 | 543 | 1.11e-61 | 214 |
MsaG010721 | MtrunA17_Chr3g0101141 | 28.597 | 549 | 332 | 16 | 123 | 639 | 21 | 541 | 1.23e-61 | 214 |
MsaG010721 | MtrunA17_Chr2g0290241 | 31.332 | 383 | 252 | 5 | 265 | 639 | 45 | 424 | 9.69e-60 | 206 |
MsaG010721 | MtrunA17_Chr2g0319091 | 31.467 | 375 | 248 | 4 | 270 | 639 | 208 | 578 | 2.59e-59 | 209 |
MsaG010721 | MtrunA17_Chr3g0125811 | 32.888 | 374 | 240 | 6 | 272 | 639 | 201 | 569 | 2.22e-58 | 206 |
MsaG010721 | MtrunA17_Chr4g0076091 | 30.239 | 377 | 255 | 4 | 269 | 640 | 170 | 543 | 4.13e-58 | 204 |
MsaG010721 | MtrunA17_Chr1g0159461 | 31.452 | 372 | 248 | 3 | 272 | 639 | 223 | 591 | 3.68e-56 | 200 |
MsaG010721 | MtrunA17_Chr5g0445331 | 30.789 | 380 | 248 | 9 | 270 | 639 | 157 | 531 | 1.84e-54 | 194 |
MsaG010721 | MtrunA17_Chr7g0224271 | 30.612 | 392 | 237 | 7 | 269 | 639 | 295 | 672 | 2.89e-53 | 194 |
MsaG010721 | MtrunA17_Chr8g0357601 | 29.897 | 388 | 242 | 10 | 269 | 639 | 177 | 551 | 8.55e-49 | 179 |
MsaG010721 | MtrunA17_Chr4g0057891 | 28.272 | 382 | 253 | 8 | 271 | 639 | 146 | 519 | 1.47e-48 | 177 |
MsaG010721 | MtrunA17_Chr8g0376381 | 29.921 | 381 | 244 | 7 | 264 | 639 | 159 | 521 | 2.46e-48 | 177 |
MsaG010721 | MtrunA17_Chr3g0110971 | 31.122 | 392 | 240 | 8 | 264 | 639 | 209 | 586 | 2.88e-48 | 178 |
MsaG010721 | MtrunA17_Chr7g0245601 | 32.055 | 365 | 234 | 8 | 278 | 641 | 442 | 793 | 6.16e-48 | 180 |
MsaG010721 | MtrunA17_Chr2g0306641 | 31.675 | 382 | 241 | 9 | 266 | 639 | 117 | 486 | 5.45e-45 | 167 |
MsaG010721 | MtrunA17_Chr5g0396491 | 26.364 | 440 | 260 | 8 | 260 | 639 | 42 | 477 | 4.53e-41 | 156 |
MsaG010721 | MtrunA17_Chr4g0057291 | 26.110 | 383 | 265 | 8 | 270 | 641 | 288 | 663 | 4.99e-41 | 159 |
MsaG010721 | MtrunA17_Chr4g0038851 | 26.316 | 437 | 257 | 9 | 263 | 639 | 37 | 468 | 2.08e-39 | 151 |
MsaG010721 | MtrunA17_Chr3g0085681 | 26.506 | 415 | 250 | 7 | 275 | 639 | 26 | 435 | 2.41e-39 | 150 |
MsaG010721 | MtrunA17_Chr4g0038761 | 29.539 | 369 | 244 | 9 | 278 | 642 | 88 | 444 | 4.10e-37 | 144 |
MsaG010721 | MtrunA17_Chr4g0039661 | 28.684 | 380 | 244 | 10 | 271 | 639 | 191 | 554 | 1.03e-36 | 144 |
MsaG010721 | MtrunA17_Chr5g0401131 | 25.654 | 382 | 266 | 9 | 274 | 641 | 114 | 491 | 1.23e-32 | 132 |
MsaG010721 | MtrunA17_Chr2g0294461 | 25.641 | 390 | 267 | 8 | 266 | 639 | 202 | 584 | 3.59e-32 | 131 |
MsaG010721 | MtrunA17_Chr1g0183641 | 27.968 | 379 | 251 | 11 | 266 | 639 | 115 | 476 | 5.04e-32 | 130 |
MsaG010721 | MtrunA17_Chr2g0294471 | 24.352 | 386 | 274 | 7 | 266 | 639 | 196 | 575 | 8.90e-30 | 124 |
MsaG010721 | MtrunA17_Chr7g0236851 | 27.178 | 287 | 198 | 5 | 359 | 639 | 375 | 656 | 1.68e-28 | 120 |
MsaG010721 | MtrunA17_Chr1g0200401 | 28.715 | 397 | 234 | 17 | 274 | 639 | 80 | 458 | 1.82e-28 | 119 |
MsaG010721 | MtrunA17_Chr7g0270031 | 25.654 | 382 | 261 | 10 | 269 | 639 | 184 | 553 | 2.35e-27 | 117 |
MsaG010721 | MtrunA17_Chr6g0468561 | 26.260 | 377 | 255 | 8 | 275 | 639 | 296 | 661 | 6.95e-27 | 115 |
MsaG010721 | MtrunA17_Chr2g0329591 | 27.436 | 390 | 250 | 11 | 274 | 641 | 74 | 452 | 1.04e-24 | 107 |
MsaG010721 | MtrunA17_Chr3g0085361 | 25.000 | 352 | 209 | 7 | 337 | 639 | 4 | 349 | 3.21e-24 | 104 |
MsaG010721 | MtrunA17_Chr5g0424131 | 25.783 | 415 | 268 | 16 | 251 | 639 | 98 | 498 | 2.58e-23 | 103 |
MsaG010721 | MtrunA17_Chr4g0053901 | 22.170 | 424 | 269 | 10 | 271 | 642 | 56 | 470 | 5.84e-22 | 99.8 |
MsaG010721 | MtrunA17_Chr3g0114841 | 26.173 | 405 | 245 | 15 | 269 | 639 | 115 | 499 | 7.49e-22 | 99.8 |
MsaG010721 | MtrunA17_Chr1g0194621 | 23.469 | 392 | 264 | 13 | 269 | 639 | 141 | 517 | 1.74e-21 | 98.6 |
MsaG010721 | MtrunA17_Chr8g0383981 | 23.961 | 409 | 278 | 14 | 247 | 642 | 110 | 498 | 5.46e-18 | 87.4 |
MsaG010721 | MtrunA17_Chr4g0012071 | 23.200 | 375 | 257 | 12 | 275 | 639 | 197 | 550 | 1.34e-14 | 77.0 |
MsaG010721 | MtrunA17_Chr7g0230771 | 23.947 | 380 | 249 | 12 | 275 | 639 | 376 | 730 | 5.47e-14 | 75.5 |
MsaG010721 | MtrunA17_Chr7g0230731 | 23.947 | 380 | 249 | 12 | 275 | 639 | 373 | 727 | 1.98e-13 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010721 | AT2G29060.2 | 43.065 | 620 | 305 | 10 | 50 | 641 | 57 | 656 | 6.30e-171 | 503 |
MsaG010721 | AT2G29060.1 | 42.006 | 638 | 323 | 10 | 50 | 641 | 57 | 693 | 1.75e-168 | 498 |
MsaG010721 | AT1G07530.1 | 51.183 | 465 | 199 | 7 | 199 | 642 | 310 | 767 | 9.11e-166 | 493 |
MsaG010721 | AT1G07520.2 | 48.322 | 447 | 215 | 8 | 207 | 642 | 90 | 531 | 1.55e-145 | 433 |
MsaG010721 | AT1G07520.4 | 48.322 | 447 | 215 | 8 | 207 | 642 | 90 | 531 | 1.55e-145 | 433 |
MsaG010721 | AT2G29065.1 | 41.100 | 618 | 318 | 15 | 50 | 642 | 34 | 630 | 1.45e-144 | 434 |
MsaG010721 | AT1G07520.3 | 48.322 | 447 | 215 | 8 | 207 | 642 | 255 | 696 | 2.58e-144 | 436 |
MsaG010721 | AT1G07520.1 | 48.322 | 447 | 215 | 8 | 207 | 642 | 254 | 695 | 2.88e-144 | 436 |
MsaG010721 | AT2G37650.2 | 49.479 | 384 | 186 | 4 | 262 | 641 | 323 | 702 | 8.17e-131 | 401 |
MsaG010721 | AT2G37650.1 | 49.479 | 384 | 186 | 4 | 262 | 641 | 335 | 714 | 8.26e-131 | 401 |
MsaG010721 | AT5G59450.1 | 37.171 | 608 | 304 | 13 | 49 | 642 | 57 | 600 | 3.31e-122 | 376 |
MsaG010721 | AT3G46600.3 | 43.192 | 426 | 231 | 6 | 221 | 642 | 131 | 549 | 8.26e-118 | 362 |
MsaG010721 | AT3G46600.1 | 43.192 | 426 | 231 | 6 | 221 | 642 | 163 | 581 | 9.68e-118 | 363 |
MsaG010721 | AT3G46600.2 | 44.947 | 376 | 200 | 4 | 271 | 642 | 1 | 373 | 4.00e-113 | 344 |
MsaG010721 | AT5G48150.1 | 33.333 | 375 | 242 | 5 | 270 | 639 | 118 | 489 | 2.13e-63 | 218 |
MsaG010721 | AT5G48150.4 | 33.333 | 375 | 242 | 5 | 270 | 639 | 118 | 489 | 2.13e-63 | 218 |
MsaG010721 | AT5G48150.2 | 33.333 | 375 | 242 | 5 | 270 | 639 | 118 | 489 | 2.13e-63 | 218 |
MsaG010721 | AT5G48150.3 | 33.333 | 375 | 242 | 5 | 270 | 639 | 118 | 489 | 2.13e-63 | 218 |
MsaG010721 | AT1G50600.3 | 33.422 | 374 | 242 | 4 | 270 | 639 | 155 | 525 | 3.10e-63 | 218 |
MsaG010721 | AT1G50600.2 | 33.422 | 374 | 242 | 4 | 270 | 639 | 230 | 600 | 5.48e-63 | 219 |
MsaG010721 | AT1G50600.1 | 33.422 | 374 | 242 | 4 | 270 | 639 | 226 | 596 | 5.73e-63 | 219 |
MsaG010721 | AT2G04890.1 | 31.351 | 370 | 248 | 3 | 270 | 639 | 49 | 412 | 2.52e-62 | 213 |
MsaG010721 | AT1G21450.1 | 28.253 | 538 | 332 | 14 | 130 | 639 | 81 | 592 | 8.44e-55 | 197 |
MsaG010721 | AT3G54220.1 | 33.081 | 396 | 248 | 9 | 250 | 641 | 269 | 651 | 4.61e-52 | 190 |
MsaG010721 | AT4G17230.1 | 30.239 | 377 | 256 | 4 | 269 | 641 | 153 | 526 | 9.27e-52 | 187 |
MsaG010721 | AT4G17230.2 | 30.239 | 377 | 256 | 4 | 269 | 641 | 153 | 526 | 9.27e-52 | 187 |
MsaG010721 | AT1G66350.1 | 31.316 | 380 | 238 | 8 | 264 | 639 | 145 | 505 | 6.62e-49 | 179 |
MsaG010721 | AT3G03450.1 | 29.534 | 386 | 248 | 9 | 264 | 639 | 173 | 544 | 1.07e-48 | 179 |
MsaG010721 | AT2G01570.1 | 29.948 | 384 | 244 | 9 | 264 | 639 | 214 | 580 | 7.68e-46 | 172 |
MsaG010721 | AT5G17490.1 | 27.778 | 378 | 255 | 7 | 266 | 639 | 152 | 515 | 1.11e-44 | 167 |
MsaG010721 | AT1G14920.1 | 28.534 | 382 | 252 | 7 | 264 | 639 | 162 | 528 | 3.44e-44 | 166 |
MsaG010721 | AT5G66770.1 | 30.541 | 370 | 239 | 9 | 278 | 639 | 224 | 583 | 2.07e-38 | 150 |
MsaG010721 | AT1G50420.1 | 23.490 | 447 | 278 | 8 | 253 | 639 | 36 | 478 | 2.72e-37 | 145 |
MsaG010721 | AT1G63100.1 | 28.212 | 358 | 240 | 8 | 262 | 614 | 244 | 589 | 5.95e-34 | 137 |
MsaG010721 | AT1G63100.2 | 28.212 | 358 | 240 | 8 | 262 | 614 | 269 | 614 | 6.23e-34 | 138 |
MsaG010721 | AT4G37650.1 | 26.257 | 358 | 234 | 9 | 273 | 607 | 145 | 495 | 4.74e-33 | 134 |
MsaG010721 | AT3G50650.1 | 27.147 | 361 | 234 | 9 | 294 | 639 | 195 | 541 | 2.86e-32 | 132 |
MsaG010721 | AT5G41920.1 | 29.211 | 380 | 244 | 12 | 268 | 639 | 37 | 399 | 5.16e-32 | 129 |
MsaG010721 | AT5G52510.1 | 25.065 | 387 | 258 | 9 | 272 | 639 | 266 | 639 | 1.96e-29 | 124 |
MsaG010721 | AT1G55580.1 | 27.163 | 416 | 244 | 11 | 271 | 639 | 41 | 444 | 1.18e-28 | 119 |
MsaG010721 | AT3G49950.1 | 24.450 | 409 | 279 | 9 | 254 | 641 | 10 | 409 | 1.65e-25 | 109 |
MsaG010721 | AT4G08250.1 | 24.936 | 389 | 268 | 12 | 266 | 639 | 97 | 476 | 9.96e-23 | 102 |
MsaG010721 | AT3G13840.1 | 24.021 | 383 | 253 | 13 | 274 | 639 | 148 | 509 | 4.23e-12 | 69.3 |
Find 112 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCACTCTCTCCAACAAATT+TGG | 0.135021 | 2:-77049998 | None:intergenic |
AGCCTTCACATTATAGATTT+TGG | 0.143420 | 2:+77049881 | MsaT010721.1:CDS |
GGAGGAATTGGAAGAGTATT+TGG | 0.153984 | 2:-77049254 | None:intergenic |
AATCTTCTTCCATGAGAAAT+TGG | 0.203759 | 2:-77048923 | None:intergenic |
CTTGGTACTAAAGTAATAAA+AGG | 0.213486 | 2:+77049443 | MsaT010721.1:CDS |
CAAAGGTTGGCACATTTCTT+TGG | 0.213920 | 2:+77049674 | MsaT010721.1:CDS |
GAATTCTCTTCAACTGTTCT+TGG | 0.222104 | 2:+77048795 | MsaT010721.1:CDS |
TGGGTTTAAGTCTTTGAAAT+TGG | 0.243482 | 2:+77050510 | MsaT010721.1:CDS |
TATCCCTGTGATCCTCAATT+TGG | 0.247519 | 2:-77049969 | None:intergenic |
GAATCCAAGGGGTGCTGTTT+TGG | 0.248365 | 2:+77050204 | MsaT010721.1:CDS |
TCTTAATCTGGTTTAATAAC+TGG | 0.258792 | 2:-77049622 | None:intergenic |
CAAACAGATTCTATAGTTAT+AGG | 0.264646 | 2:+77049507 | MsaT010721.1:CDS |
GAAACAAAGTTTGGAGGAAT+TGG | 0.270095 | 2:-77049266 | None:intergenic |
TTCTATTTGGTTCTTCTTGT+TGG | 0.274191 | 2:+77050644 | MsaT010721.1:CDS |
TGAAATATCATTACAAGAAA+TGG | 0.276552 | 2:-77049591 | None:intergenic |
TGTTTGAGGTGAATGAAAAT+TGG | 0.282920 | 2:+77050596 | MsaT010721.1:CDS |
ATTCACTCTCCCTTTGTTCA+TGG | 0.291853 | 2:-77048776 | None:intergenic |
TAGTTGTATGAGTCTATAAT+TGG | 0.294656 | 2:-77049209 | None:intergenic |
AGTAATTTATCAAATAATTC+TGG | 0.301090 | 2:-77049416 | None:intergenic |
TTTGTTCATAGCATTGTTAA+TGG | 0.316703 | 2:+77050256 | MsaT010721.1:CDS |
GAGAAGAATGTGTCTTAATC+TGG | 0.320149 | 2:-77049634 | None:intergenic |
GAGGAATTGGAAGAGTATTT+GGG | 0.326156 | 2:-77049253 | None:intergenic |
TGGAAGGGTAGAGTTCTATT+TGG | 0.329745 | 2:+77050631 | MsaT010721.1:CDS |
TCGAATTGAGAAACAAAGTT+TGG | 0.339338 | 2:-77049275 | None:intergenic |
GCAACTTATTGCGAACGTTT+CGG | 0.343573 | 2:+77050040 | MsaT010721.1:CDS |
TGATGTTTGAGGAAGAGTTT+TGG | 0.352833 | 2:+77050392 | MsaT010721.1:CDS |
TGGAAGACTCTTCATGTTCA+TGG | 0.366829 | 2:-77048881 | None:intergenic |
AGAGTATTTGGGAGTGGAAA+AGG | 0.382981 | 2:-77049242 | None:intergenic |
ATCCCTGTGATCCTCAATTT+GGG | 0.383992 | 2:-77049968 | None:intergenic |
GAAGAAATCTGCTGCAGATA+TGG | 0.397365 | 2:+77049760 | MsaT010721.1:CDS |
GAGTGAATGGAACAGGTCTT+AGG | 0.405752 | 2:+77050014 | MsaT010721.1:CDS |
ATGCTATGAACAAATATATT+CGG | 0.406151 | 2:-77050247 | None:intergenic |
GTTGAAGAGCAAAGGAATCT+TGG | 0.406232 | 2:-77048968 | None:intergenic |
GCAATACCATTGAACTCAAA+AGG | 0.418002 | 2:-77050067 | None:intergenic |
GATAGATCTTCCAAATTTGT+TGG | 0.422261 | 2:+77049988 | MsaT010721.1:CDS |
AAACTATAATCACTGATGTC+AGG | 0.427646 | 2:-77049152 | None:intergenic |
TTGAGAGGCCAGAGACATAT+AGG | 0.428001 | 2:+77050461 | MsaT010721.1:CDS |
TTTGATAAATTACTAGTCCT+TGG | 0.440112 | 2:+77049425 | MsaT010721.1:CDS |
ATGAGGAAGTTGTGGATTTG+AGG | 0.441434 | 2:+77049543 | MsaT010721.1:CDS |
TAGCTTGTGAAGGCTGTGAT+AGG | 0.447026 | 2:+77050437 | MsaT010721.1:CDS |
ACTCTTCATGTTCATGGTGT+TGG | 0.448056 | 2:-77048875 | None:intergenic |
TTGGAGAGAGTGAATGGAAC+AGG | 0.449006 | 2:+77050007 | MsaT010721.1:CDS |
AAGACACATTCTTCTCCAAC+AGG | 0.450645 | 2:+77049641 | MsaT010721.1:CDS |
AAAGCACGTTTAGCAGGAAC+TGG | 0.455780 | 2:+77049707 | MsaT010721.1:CDS |
CTTTGAGTTCCATCACCTGT+TGG | 0.463702 | 2:-77049656 | None:intergenic |
TGCCATTGCCTATATGTCTC+TGG | 0.465075 | 2:-77050469 | None:intergenic |
CACTTGAAAACACAAGCTTT+CGG | 0.465170 | 2:+77049468 | MsaT010721.1:CDS |
AATTTGTTGGAGAGAGTGAA+TGG | 0.471019 | 2:+77050001 | MsaT010721.1:CDS |
TCCTAGTAGGTTGATGTTTG+AGG | 0.474185 | 2:+77050381 | MsaT010721.1:CDS |
GAAGAGTCTTCCAATGCTCT+TGG | 0.479029 | 2:+77048891 | MsaT010721.1:CDS |
GAGTATTTGGGAGTGGAAAA+GGG | 0.483840 | 2:-77049241 | None:intergenic |
CATCGTTTATCGAAAAGATC+TGG | 0.488523 | 2:+77049938 | MsaT010721.1:CDS |
GCACTTAAAGCACGTTTAGC+AGG | 0.497655 | 2:+77049701 | MsaT010721.1:CDS |
CATGTTGTGAAGCTCTATGC+TGG | 0.501576 | 2:-77050670 | None:intergenic |
TCCTCAAACATCAACCTACT+AGG | 0.501588 | 2:-77050382 | None:intergenic |
ACTTGATGAGACAGTTGCTT+CGG | 0.501704 | 2:+77050180 | MsaT010721.1:CDS |
CCACCCAAATTGAGGATCAC+AGG | 0.502169 | 2:+77049965 | MsaT010721.1:CDS |
GTTAATATAACCAAGAGCAT+TGG | 0.505462 | 2:-77048901 | None:intergenic |
CTCAGTAAGTTGAAGAGCAA+AGG | 0.507074 | 2:-77048976 | None:intergenic |
TAGGAGACAAAGAAGTTATG+AGG | 0.508963 | 2:+77049526 | MsaT010721.1:CDS |
AAAATTGGATGCTACAAGGT+TGG | 0.509330 | 2:+77050611 | MsaT010721.1:CDS |
GCAGTAGCAGTAGGAGGAGG+AGG | 0.511002 | 2:-77049041 | None:intergenic |
GAAGTGAAAGAAGGAGGAGG+AGG | 0.513604 | 2:-77049071 | None:intergenic |
CAGTTGCTTCGGAGAATCCA+AGG | 0.513959 | 2:+77050191 | MsaT010721.1:CDS |
CATTCTTCTCCAACAGGTGA+TGG | 0.515669 | 2:+77049647 | MsaT010721.1:CDS |
ATTGGAAGAGTATTTGGGAG+TGG | 0.520042 | 2:-77049248 | None:intergenic |
TTGGTACTAAAGTAATAAAA+GGG | 0.520896 | 2:+77049444 | MsaT010721.1:CDS |
AATTGAGAAACAAAGTTTGG+AGG | 0.522706 | 2:-77049272 | None:intergenic |
TACCTCATGAGAAGGGAAAA+CGG | 0.524121 | 2:-77049303 | None:intergenic |
TTATATTAACCAATTTCTCA+TGG | 0.526067 | 2:+77048914 | MsaT010721.1:CDS |
AAGAAGTTATGAGGAAGTTG+TGG | 0.533441 | 2:+77049535 | MsaT010721.1:CDS |
GCATGTTATAGATAAATTGA+AGG | 0.536806 | 2:+77050537 | MsaT010721.1:CDS |
CATGTTATAGATAAATTGAA+GGG | 0.543479 | 2:+77050538 | MsaT010721.1:CDS |
GTCTTAATTACCTCATGAGA+AGG | 0.545201 | 2:-77049311 | None:intergenic |
AAATCCAAAACAGCACCCCT+TGG | 0.545355 | 2:-77050208 | None:intergenic |
GGCATGCTGATGAATAAACT+TGG | 0.547453 | 2:-77049793 | None:intergenic |
TTGGATGCTACAAGGTTGGA+AGG | 0.548278 | 2:+77050615 | MsaT010721.1:CDS |
TTGGGAAAGTATCAAAGTTG+AGG | 0.550259 | 2:+77050096 | MsaT010721.1:CDS |
GTAGCAGTAGGAGGAGGAGG+AGG | 0.552690 | 2:-77049038 | None:intergenic |
GTTCATAGCATTGTTAATGG+TGG | 0.554304 | 2:+77050259 | MsaT010721.1:CDS |
AACTATAATCACTGATGTCA+GGG | 0.555622 | 2:-77049151 | None:intergenic |
TGATTCACACCATGAACAAA+GGG | 0.556404 | 2:+77048767 | MsaT010721.1:CDS |
GCAGCAGTAGCAGTAGGAGG+AGG | 0.561458 | 2:-77049044 | None:intergenic |
GGAGCAGCAGCAGTAGCAGT+AGG | 0.562763 | 2:-77049050 | None:intergenic |
GACGACGAAGAAGTGAAAGA+AGG | 0.569183 | 2:-77049080 | None:intergenic |
TATAATTGGATCAAGTTCAA+AGG | 0.570239 | 2:-77049195 | None:intergenic |
CACCAAAATCTATAATGTGA+AGG | 0.575769 | 2:-77049883 | None:intergenic |
TTGAACGTGAGGATCCTAGT+AGG | 0.577844 | 2:+77050368 | MsaT010721.1:CDS |
GAAGAAGTGAAAGAAGGAGG+AGG | 0.579367 | 2:-77049074 | None:intergenic |
GGCCAGAGACATATAGGCAA+TGG | 0.582352 | 2:+77050467 | MsaT010721.1:CDS |
GAATGGAACAGGTCTTAGGC+TGG | 0.584610 | 2:+77050018 | MsaT010721.1:CDS |
CATGGAAGATGATGACATAG+AGG | 0.588846 | 2:+77048836 | MsaT010721.1:CDS |
CGTTTATCGAAAAGATCTGG+TGG | 0.590533 | 2:+77049941 | MsaT010721.1:CDS |
TCTTAATTACCTCATGAGAA+GGG | 0.597606 | 2:-77049310 | None:intergenic |
TTGATTCACACCATGAACAA+AGG | 0.599099 | 2:+77048766 | MsaT010721.1:CDS |
CACCCAAATTGAGGATCACA+GGG | 0.601284 | 2:+77049966 | MsaT010721.1:CDS |
AGTTGCTTCGGAGAATCCAA+GGG | 0.606761 | 2:+77050192 | MsaT010721.1:CDS |
CTGGTGGGCCACCCAAATTG+AGG | 0.614366 | 2:+77049957 | MsaT010721.1:CDS |
GCAGCAGCAGTAGCAGTAGG+AGG | 0.617587 | 2:-77049047 | None:intergenic |
CCTGTGATCCTCAATTTGGG+TGG | 0.623258 | 2:-77049965 | None:intergenic |
AGGTGATGGAACTCAAAGGT+TGG | 0.629359 | 2:+77049661 | MsaT010721.1:CDS |
GACGAAGAAGTGAAAGAAGG+AGG | 0.633102 | 2:-77049077 | None:intergenic |
CAACAGGTGATGGAACTCAA+AGG | 0.635236 | 2:+77049657 | MsaT010721.1:CDS |
AATGAAAATTGGATGCTACA+AGG | 0.641663 | 2:+77050607 | MsaT010721.1:CDS |
TGGATGCTACAAGGTTGGAA+GGG | 0.641743 | 2:+77050616 | MsaT010721.1:CDS |
TTGTTGTAGATGGACAAAAG+AGG | 0.645747 | 2:+77048741 | None:intergenic |
TAACAACAATGTTGAACGTG+AGG | 0.650267 | 2:+77050357 | MsaT010721.1:CDS |
GATAAACGATGTATAAAACC+AGG | 0.661852 | 2:-77049926 | None:intergenic |
ATGAATGTTATAGCTTGTGA+AGG | 0.662961 | 2:+77050427 | MsaT010721.1:CDS |
GTTTATCGAAAAGATCTGGT+GGG | 0.689733 | 2:+77049942 | MsaT010721.1:CDS |
AAGGCTGTGATAGGATTGAG+AGG | 0.704778 | 2:+77050446 | MsaT010721.1:CDS |
GTTGCTTCGGAGAATCCAAG+GGG | 0.756075 | 2:+77050193 | MsaT010721.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 77048750 | 77050678 | 77048750 | ID=MsaG010721 |
Chr2 | mRNA | 77048750 | 77050678 | 77048750 | ID=MsaT010721.1;Parent=MsaG010721 |
Chr2 | exon | 77048750 | 77050678 | 77048750 | ID=MsaT010721.1.exon1;Parent=MsaT010721.1 |
Chr2 | CDS | 77048750 | 77050678 | 77048750 | ID=cds.MsaT010721.1;Parent=MsaT010721.1 |
Gene Sequence |
Protein sequence |