Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010723 | XP_003597371.3 | 93.478 | 644 | 36 | 3 | 1 | 639 | 1 | 643 | 0.0 | 1201 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010723 | sp|Q9XE58|SCL14_ARATH | 52.165 | 462 | 198 | 8 | 197 | 639 | 310 | 767 | 7.51e-163 | 488 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010723 | tr|A0A396JHA8|A0A396JHA8_MEDTR | 93.478 | 644 | 36 | 3 | 1 | 639 | 1 | 643 | 0.0 | 1201 |
Gene ID | Type | Classification |
---|---|---|
MsaG010723 | TF | GRAS |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010723 | MtrunA17_Chr2g0328381 | 93.478 | 644 | 36 | 3 | 1 | 639 | 1 | 643 | 0.0 | 1201 |
MsaG010723 | MtrunA17_Chr2g0328341 | 84.259 | 648 | 85 | 7 | 1 | 639 | 1 | 640 | 0.0 | 1075 |
MsaG010723 | MtrunA17_Chr2g0328361 | 77.504 | 649 | 104 | 6 | 1 | 639 | 1 | 617 | 0.0 | 959 |
MsaG010723 | MtrunA17_Chr4g0031721 | 47.983 | 694 | 279 | 16 | 17 | 639 | 4 | 686 | 0.0 | 578 |
MsaG010723 | MtrunA17_Chr2g0328371 | 87.698 | 252 | 31 | 0 | 341 | 592 | 1 | 252 | 1.54e-165 | 473 |
MsaG010723 | MtrunA17_Chr2g0328391 | 43.639 | 621 | 317 | 11 | 42 | 639 | 61 | 671 | 4.45e-158 | 470 |
MsaG010723 | MtrunA17_Chr4g0031701 | 42.834 | 621 | 312 | 16 | 42 | 639 | 28 | 628 | 1.68e-155 | 462 |
MsaG010723 | MtrunA17_Chr4g0031731 | 42.029 | 621 | 317 | 15 | 42 | 639 | 28 | 628 | 1.27e-150 | 449 |
MsaG010723 | MtrunA17_Chr7g0238891 | 51.074 | 419 | 193 | 6 | 226 | 639 | 331 | 742 | 3.52e-150 | 452 |
MsaG010723 | MtrunA17_Chr4g0031711 | 48.747 | 439 | 208 | 7 | 216 | 639 | 299 | 735 | 2.41e-147 | 444 |
MsaG010723 | MtrunA17_Chr4g0031741 | 47.198 | 464 | 211 | 8 | 200 | 639 | 199 | 652 | 3.46e-140 | 423 |
MsaG010723 | MtrunA17_Chr2g0328411 | 37.920 | 625 | 334 | 14 | 46 | 637 | 51 | 654 | 1.78e-138 | 420 |
MsaG010723 | MtrunA17_Chr2g0328431 | 46.207 | 435 | 220 | 6 | 214 | 639 | 227 | 656 | 2.13e-135 | 411 |
MsaG010723 | MtrunA17_Chr2g0328401 | 37.167 | 600 | 324 | 15 | 50 | 616 | 55 | 634 | 8.24e-126 | 385 |
MsaG010723 | MtrunA17_Chr5g0447691 | 28.862 | 492 | 313 | 9 | 160 | 636 | 74 | 543 | 2.09e-65 | 224 |
MsaG010723 | MtrunA17_Chr3g0101141 | 29.401 | 534 | 327 | 14 | 127 | 636 | 34 | 541 | 3.11e-62 | 216 |
MsaG010723 | MtrunA17_Chr2g0290241 | 30.548 | 383 | 255 | 5 | 262 | 636 | 45 | 424 | 5.09e-62 | 212 |
MsaG010723 | MtrunA17_Chr4g0076091 | 30.239 | 377 | 255 | 4 | 266 | 637 | 170 | 543 | 1.33e-60 | 211 |
MsaG010723 | MtrunA17_Chr2g0319091 | 32.095 | 377 | 243 | 4 | 267 | 636 | 208 | 578 | 3.31e-60 | 211 |
MsaG010723 | MtrunA17_Chr5g0445331 | 31.579 | 380 | 245 | 8 | 267 | 636 | 157 | 531 | 2.65e-57 | 202 |
MsaG010723 | MtrunA17_Chr3g0125811 | 29.839 | 372 | 254 | 3 | 269 | 636 | 201 | 569 | 7.82e-57 | 201 |
MsaG010723 | MtrunA17_Chr1g0159461 | 30.108 | 372 | 253 | 3 | 269 | 636 | 223 | 591 | 8.06e-56 | 199 |
MsaG010723 | MtrunA17_Chr7g0224271 | 30.964 | 394 | 233 | 8 | 266 | 636 | 295 | 672 | 6.95e-53 | 192 |
MsaG010723 | MtrunA17_Chr8g0376381 | 30.184 | 381 | 243 | 7 | 261 | 636 | 159 | 521 | 9.65e-49 | 178 |
MsaG010723 | MtrunA17_Chr2g0306641 | 30.667 | 450 | 281 | 12 | 203 | 636 | 52 | 486 | 1.99e-46 | 171 |
MsaG010723 | MtrunA17_Chr8g0357601 | 28.244 | 393 | 248 | 9 | 266 | 639 | 177 | 554 | 2.90e-46 | 172 |
MsaG010723 | MtrunA17_Chr4g0057891 | 28.010 | 382 | 254 | 8 | 268 | 636 | 146 | 519 | 7.33e-46 | 170 |
MsaG010723 | MtrunA17_Chr3g0110971 | 31.378 | 392 | 239 | 8 | 261 | 636 | 209 | 586 | 8.19e-45 | 168 |
MsaG010723 | MtrunA17_Chr7g0245601 | 30.685 | 365 | 239 | 8 | 275 | 638 | 442 | 793 | 9.37e-44 | 168 |
MsaG010723 | MtrunA17_Chr4g0057291 | 26.425 | 386 | 260 | 9 | 267 | 638 | 288 | 663 | 1.63e-43 | 166 |
MsaG010723 | MtrunA17_Chr5g0396491 | 25.114 | 438 | 262 | 9 | 260 | 636 | 45 | 477 | 3.40e-39 | 150 |
MsaG010723 | MtrunA17_Chr3g0085681 | 24.578 | 415 | 258 | 7 | 272 | 636 | 26 | 435 | 2.58e-38 | 147 |
MsaG010723 | MtrunA17_Chr4g0038851 | 25.172 | 437 | 262 | 9 | 260 | 636 | 37 | 468 | 7.56e-38 | 146 |
MsaG010723 | MtrunA17_Chr4g0039661 | 28.158 | 380 | 246 | 10 | 268 | 636 | 191 | 554 | 3.14e-33 | 134 |
MsaG010723 | MtrunA17_Chr4g0038761 | 28.460 | 383 | 230 | 12 | 275 | 639 | 88 | 444 | 5.94e-32 | 129 |
MsaG010723 | MtrunA17_Chr2g0294461 | 24.742 | 388 | 273 | 6 | 263 | 636 | 202 | 584 | 2.40e-31 | 129 |
MsaG010723 | MtrunA17_Chr1g0200401 | 27.411 | 394 | 243 | 13 | 271 | 636 | 80 | 458 | 4.95e-31 | 126 |
MsaG010723 | MtrunA17_Chr5g0401131 | 25.393 | 382 | 267 | 10 | 271 | 638 | 114 | 491 | 1.62e-30 | 125 |
MsaG010723 | MtrunA17_Chr7g0236851 | 27.778 | 288 | 197 | 5 | 356 | 637 | 375 | 657 | 2.35e-30 | 126 |
MsaG010723 | MtrunA17_Chr7g0270031 | 25.526 | 380 | 264 | 9 | 266 | 636 | 184 | 553 | 8.88e-30 | 124 |
MsaG010723 | MtrunA17_Chr1g0183641 | 26.036 | 507 | 316 | 20 | 143 | 636 | 16 | 476 | 3.60e-29 | 121 |
MsaG010723 | MtrunA17_Chr2g0294471 | 23.575 | 386 | 277 | 7 | 263 | 636 | 196 | 575 | 2.33e-28 | 120 |
MsaG010723 | MtrunA17_Chr6g0468561 | 25.132 | 378 | 258 | 10 | 272 | 636 | 296 | 661 | 1.56e-25 | 111 |
MsaG010723 | MtrunA17_Chr3g0085361 | 23.796 | 353 | 212 | 8 | 334 | 636 | 4 | 349 | 1.85e-24 | 105 |
MsaG010723 | MtrunA17_Chr5g0424131 | 26.031 | 388 | 257 | 13 | 271 | 637 | 121 | 499 | 2.06e-23 | 104 |
MsaG010723 | MtrunA17_Chr1g0194621 | 24.359 | 390 | 263 | 13 | 266 | 636 | 141 | 517 | 3.35e-23 | 103 |
MsaG010723 | MtrunA17_Chr4g0053901 | 22.877 | 424 | 266 | 10 | 268 | 639 | 56 | 470 | 1.09e-22 | 101 |
MsaG010723 | MtrunA17_Chr2g0329591 | 29.097 | 299 | 197 | 6 | 271 | 562 | 74 | 364 | 6.59e-22 | 99.4 |
MsaG010723 | MtrunA17_Chr5g0401421 | 21.647 | 425 | 272 | 10 | 268 | 639 | 32 | 448 | 2.06e-21 | 97.8 |
MsaG010723 | MtrunA17_Chr3g0114841 | 24.257 | 404 | 256 | 14 | 266 | 637 | 115 | 500 | 4.60e-21 | 97.1 |
MsaG010723 | MtrunA17_Chr8g0383981 | 23.691 | 401 | 271 | 16 | 252 | 639 | 120 | 498 | 6.05e-19 | 90.5 |
MsaG010723 | MtrunA17_Chr7g0230771 | 24.074 | 378 | 251 | 11 | 272 | 636 | 376 | 730 | 2.33e-16 | 83.2 |
MsaG010723 | MtrunA17_Chr4g0012071 | 23.720 | 371 | 252 | 12 | 276 | 636 | 201 | 550 | 5.87e-16 | 81.3 |
MsaG010723 | MtrunA17_Chr7g0230731 | 23.810 | 378 | 252 | 11 | 272 | 636 | 373 | 727 | 1.17e-15 | 80.9 |
MsaG010723 | MtrunA17_Chr8g0344101 | 23.821 | 403 | 244 | 15 | 271 | 636 | 223 | 599 | 1.25e-11 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010723 | AT2G29060.2 | 43.436 | 617 | 308 | 12 | 46 | 638 | 57 | 656 | 2.36e-168 | 496 |
MsaG010723 | AT1G07530.1 | 52.165 | 462 | 198 | 8 | 197 | 639 | 310 | 767 | 7.64e-164 | 488 |
MsaG010723 | AT2G29060.1 | 49.563 | 458 | 214 | 6 | 197 | 638 | 237 | 693 | 3.24e-160 | 476 |
MsaG010723 | AT1G07520.2 | 48.655 | 446 | 214 | 8 | 205 | 639 | 90 | 531 | 5.85e-143 | 426 |
MsaG010723 | AT1G07520.4 | 48.655 | 446 | 214 | 8 | 205 | 639 | 90 | 531 | 5.85e-143 | 426 |
MsaG010723 | AT1G07520.3 | 49.195 | 435 | 207 | 7 | 215 | 639 | 266 | 696 | 1.60e-141 | 428 |
MsaG010723 | AT1G07520.1 | 49.195 | 435 | 207 | 7 | 215 | 639 | 265 | 695 | 2.12e-141 | 428 |
MsaG010723 | AT2G29065.1 | 41.283 | 608 | 332 | 13 | 46 | 639 | 34 | 630 | 1.99e-140 | 423 |
MsaG010723 | AT2G37650.2 | 48.947 | 380 | 186 | 4 | 263 | 638 | 327 | 702 | 1.56e-126 | 390 |
MsaG010723 | AT2G37650.1 | 48.947 | 380 | 186 | 4 | 263 | 638 | 339 | 714 | 1.89e-126 | 390 |
MsaG010723 | AT3G46600.3 | 43.059 | 425 | 232 | 5 | 219 | 639 | 131 | 549 | 3.16e-119 | 366 |
MsaG010723 | AT3G46600.1 | 43.059 | 425 | 232 | 5 | 219 | 639 | 163 | 581 | 5.71e-119 | 366 |
MsaG010723 | AT5G59450.1 | 39.825 | 457 | 261 | 6 | 195 | 639 | 146 | 600 | 8.95e-116 | 359 |
MsaG010723 | AT3G46600.2 | 45.213 | 376 | 199 | 4 | 268 | 639 | 1 | 373 | 9.55e-114 | 346 |
MsaG010723 | AT5G48150.1 | 33.600 | 375 | 241 | 5 | 267 | 636 | 118 | 489 | 1.87e-67 | 229 |
MsaG010723 | AT5G48150.4 | 33.600 | 375 | 241 | 5 | 267 | 636 | 118 | 489 | 1.87e-67 | 229 |
MsaG010723 | AT5G48150.2 | 33.600 | 375 | 241 | 5 | 267 | 636 | 118 | 489 | 1.87e-67 | 229 |
MsaG010723 | AT5G48150.3 | 33.600 | 375 | 241 | 5 | 267 | 636 | 118 | 489 | 1.87e-67 | 229 |
MsaG010723 | AT2G04890.1 | 31.892 | 370 | 246 | 3 | 267 | 636 | 49 | 412 | 6.03e-66 | 222 |
MsaG010723 | AT1G50600.3 | 31.830 | 399 | 257 | 5 | 245 | 636 | 135 | 525 | 1.76e-63 | 219 |
MsaG010723 | AT1G50600.1 | 31.830 | 399 | 257 | 5 | 245 | 636 | 206 | 596 | 3.82e-63 | 220 |
MsaG010723 | AT1G50600.2 | 31.830 | 399 | 257 | 5 | 245 | 636 | 210 | 600 | 4.71e-63 | 219 |
MsaG010723 | AT1G21450.1 | 28.383 | 532 | 351 | 15 | 122 | 636 | 74 | 592 | 1.84e-57 | 204 |
MsaG010723 | AT4G17230.1 | 29.708 | 377 | 258 | 3 | 266 | 638 | 153 | 526 | 6.68e-52 | 187 |
MsaG010723 | AT4G17230.2 | 29.708 | 377 | 258 | 3 | 266 | 638 | 153 | 526 | 6.68e-52 | 187 |
MsaG010723 | AT2G01570.1 | 30.570 | 386 | 239 | 10 | 261 | 636 | 214 | 580 | 1.92e-45 | 171 |
MsaG010723 | AT1G66350.1 | 31.332 | 383 | 234 | 10 | 261 | 636 | 145 | 505 | 3.51e-45 | 168 |
MsaG010723 | AT3G54220.1 | 31.429 | 385 | 247 | 9 | 258 | 638 | 280 | 651 | 6.91e-45 | 170 |
MsaG010723 | AT3G03450.1 | 28.497 | 386 | 252 | 8 | 261 | 636 | 173 | 544 | 7.03e-44 | 165 |
MsaG010723 | AT1G14920.1 | 28.796 | 382 | 251 | 7 | 261 | 636 | 162 | 528 | 7.70e-44 | 165 |
MsaG010723 | AT5G17490.1 | 26.984 | 378 | 258 | 7 | 263 | 636 | 152 | 515 | 1.07e-41 | 159 |
MsaG010723 | AT1G50420.1 | 23.364 | 428 | 260 | 9 | 271 | 636 | 57 | 478 | 2.22e-36 | 143 |
MsaG010723 | AT5G66770.1 | 29.679 | 374 | 237 | 11 | 275 | 636 | 224 | 583 | 4.96e-35 | 140 |
MsaG010723 | AT1G63100.2 | 28.249 | 354 | 233 | 9 | 267 | 611 | 273 | 614 | 1.29e-33 | 137 |
MsaG010723 | AT1G63100.1 | 28.249 | 354 | 233 | 9 | 267 | 611 | 248 | 589 | 1.50e-33 | 136 |
MsaG010723 | AT5G41920.1 | 29.016 | 386 | 237 | 14 | 265 | 636 | 37 | 399 | 5.69e-31 | 125 |
MsaG010723 | AT4G37650.1 | 25.556 | 360 | 234 | 9 | 270 | 604 | 145 | 495 | 1.04e-30 | 127 |
MsaG010723 | AT3G50650.1 | 26.171 | 363 | 235 | 10 | 291 | 636 | 195 | 541 | 2.55e-29 | 123 |
MsaG010723 | AT5G52510.1 | 24.806 | 387 | 259 | 9 | 269 | 636 | 266 | 639 | 1.53e-28 | 121 |
MsaG010723 | AT4G08250.1 | 24.297 | 391 | 270 | 12 | 263 | 637 | 97 | 477 | 3.95e-23 | 103 |
MsaG010723 | AT3G49950.1 | 24.103 | 390 | 270 | 9 | 268 | 638 | 27 | 409 | 5.26e-23 | 102 |
MsaG010723 | AT1G55580.1 | 25.362 | 414 | 254 | 11 | 268 | 636 | 41 | 444 | 2.06e-22 | 100 |
MsaG010723 | AT3G60630.1 | 28.571 | 210 | 125 | 8 | 342 | 537 | 327 | 525 | 1.91e-11 | 67.8 |
Find 104 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGAGAAAATGGAGGAGTATT+TGG | 0.132396 | 2:-77065617 | None:intergenic |
TTCTATTTGGTTCTTCTTGC+TGG | 0.149493 | 2:+77067025 | MsaT010723.1:CDS |
TTCACTCTCTCCAATGAATT+TGG | 0.151096 | 2:-77066379 | None:intergenic |
AGTCTTCACATTATAGATTT+TGG | 0.160984 | 2:+77066262 | MsaT010723.1:CDS |
TCTTAATCTGGTTTAATAAT+TGG | 0.162293 | 2:-77066003 | None:intergenic |
ATGCTATGAATAAATATATT+TGG | 0.170780 | 2:-77066628 | None:intergenic |
GATTGAGAAACAAAGTTATT+AGG | 0.220917 | 2:-77065638 | None:intergenic |
GAATTCTCTTCAACTGTTCT+TGG | 0.222104 | 2:+77065173 | MsaT010723.1:CDS |
ACAAAGTTATTAGGAGAAAA+TGG | 0.226727 | 2:-77065629 | None:intergenic |
TTTCTCAATGTGTCACAAAA+TGG | 0.237333 | 2:+77065740 | MsaT010723.1:CDS |
AGTCTTCTTCCATTAGAAAT+TGG | 0.248268 | 2:-77065301 | None:intergenic |
TTTATTCATAGCATTGTTAA+TGG | 0.248656 | 2:+77066637 | MsaT010723.1:CDS |
GTGAAGACTTTCTGTTTCTT+TGG | 0.249798 | 2:-77066248 | None:intergenic |
TAGAAGAATGTTTCTTAATC+TGG | 0.256983 | 2:-77066015 | None:intergenic |
CAAACAGATTCTATCGTTCT+AGG | 0.263554 | 2:+77065891 | MsaT010723.1:CDS |
CATATATGCATTGGCATTCT+AGG | 0.265664 | 2:+77066857 | MsaT010723.1:CDS |
TTTGATAAAGTACTAGTTCT+TGG | 0.268048 | 2:+77065809 | MsaT010723.1:CDS |
TGAAATATCATTACAAGAAA+TGG | 0.276552 | 2:-77065972 | None:intergenic |
ATTATTGAAAGAAGGGAAAA+AGG | 0.276813 | 2:-77065669 | None:intergenic |
TGGGTTTAGATCTTTGAAAT+TGG | 0.278226 | 2:+77066891 | MsaT010723.1:CDS |
AAACTATAATCACTGAAGTT+AGG | 0.291953 | 2:-77065515 | None:intergenic |
GAATCCGAGAGGTGCTGTTT+TGG | 0.303272 | 2:+77066585 | MsaT010723.1:CDS |
GAGAAAATGGAGGAGTATTT+GGG | 0.303863 | 2:-77065616 | None:intergenic |
TGTTTGAGGTGAAGGAAAAT+TGG | 0.305166 | 2:+77066977 | MsaT010723.1:CDS |
TTCTATAAACCAATTTCTAA+TGG | 0.312579 | 2:+77065292 | MsaT010723.1:CDS |
TGGAAGGGTAGAATTCTATT+TGG | 0.313548 | 2:+77067012 | MsaT010723.1:CDS |
CATTCTAGGCACATGGGAAA+TGG | 0.323083 | 2:+77066871 | MsaT010723.1:CDS |
GATAGATCTTCCAAATTCAT+TGG | 0.350686 | 2:+77066369 | MsaT010723.1:CDS |
TCTATTTGGTTCTTCTTGCT+GGG | 0.374895 | 2:+77067026 | MsaT010723.1:CDS |
TTGATGATTCTTCATTCTGC+TGG | 0.378672 | 2:-77065871 | None:intergenic |
TCCTCAAACATCAACCTAAC+AGG | 0.379387 | 2:-77066763 | None:intergenic |
GGAGTATTTGGGAGTAGAAA+AGG | 0.380526 | 2:-77065605 | None:intergenic |
ACCTGATGAGACAGTTGTTT+CGG | 0.393796 | 2:+77066561 | MsaT010723.1:CDS |
TAGCCTGTGAAGGCTGTGAT+AGG | 0.399278 | 2:+77066818 | MsaT010723.1:CDS |
GCAATACCATTGTACTCAAA+AGG | 0.401991 | 2:-77066448 | None:intergenic |
CTTGGTACTAAATTCACAAA+AGG | 0.404219 | 2:+77065827 | MsaT010723.1:CDS |
CTTGAAGAGCAAAAGAATCT+TGG | 0.409666 | 2:-77065346 | None:intergenic |
GATGTTTGAGGAAGACGTTT+GGG | 0.411150 | 2:+77066774 | MsaT010723.1:CDS |
AAGAAACATTCTTCTACAAC+AGG | 0.417986 | 2:+77066022 | MsaT010723.1:CDS |
GAGTGAATGAAACAGGTCTT+AGG | 0.420195 | 2:+77066395 | MsaT010723.1:CDS |
GAAAGAGCATTATTGAAAGA+AGG | 0.427388 | 2:-77065677 | None:intergenic |
GAGTATTTGGGAGTAGAAAA+GGG | 0.432472 | 2:-77065604 | None:intergenic |
TTGGAGAGAGTGAATGAAAC+AGG | 0.438708 | 2:+77066388 | MsaT010723.1:CDS |
ATGAGGAAGTTGTGGATTTG+AGG | 0.441434 | 2:+77065924 | MsaT010723.1:CDS |
AACTATAATCACTGAAGTTA+GGG | 0.442010 | 2:-77065514 | None:intergenic |
AAAGAGCATTATTGAAAGAA+GGG | 0.443472 | 2:-77065676 | None:intergenic |
GAAGCACGTTTAGCAGGAAC+TGG | 0.446336 | 2:+77066088 | MsaT010723.1:CDS |
TGATGTTTGAGGAAGACGTT+TGG | 0.448987 | 2:+77066773 | MsaT010723.1:CDS |
ATTCTAGGCACATGGGAAAT+GGG | 0.456200 | 2:+77066872 | MsaT010723.1:CDS |
GGTTATGGTTTCAAGTGGCT+TGG | 0.456727 | 2:+77066289 | MsaT010723.1:CDS |
TATCCCTGTGATCCTCAACT+TGG | 0.460979 | 2:-77066350 | None:intergenic |
GCAGATTATAAATAAATTGA+AGG | 0.461295 | 2:+77066918 | MsaT010723.1:CDS |
GTAACAGCAGCAGCAATAGT+AGG | 0.465452 | 2:-77065419 | None:intergenic |
TCCTGTTAGGTTGATGTTTG+AGG | 0.467599 | 2:+77066762 | MsaT010723.1:CDS |
ACTCTTCATGTTCATTGTGT+TGG | 0.472559 | 2:-77065253 | None:intergenic |
GCGCTTGAAGCACGTTTAGC+AGG | 0.476214 | 2:+77066082 | MsaT010723.1:CDS |
GTTTATAGAATCAAGAGCAT+TGG | 0.477886 | 2:-77065279 | None:intergenic |
TCCGAAACAACTGTCTCATC+AGG | 0.480396 | 2:-77066562 | None:intergenic |
TGCCAATGCATATATGTCTC+TGG | 0.481671 | 2:-77066850 | None:intergenic |
CCACCCAAGTTGAGGATCAC+AGG | 0.486139 | 2:+77066346 | MsaT010723.1:CDS |
TATCGTTTATCGAAAAGATC+TGG | 0.498438 | 2:+77066319 | MsaT010723.1:CDS |
TTCTAGGAAACGAAGTTATG+AGG | 0.503468 | 2:+77065907 | MsaT010723.1:CDS |
AAAATTGGATGCTACAAGGT+TGG | 0.509330 | 2:+77066992 | MsaT010723.1:CDS |
TTGGTACTAAATTCACAAAA+GGG | 0.510419 | 2:+77065828 | MsaT010723.1:CDS |
AACCCTATCACAGCCTTCAC+AGG | 0.513850 | 2:-77066821 | None:intergenic |
GCAATAGTAGGAGGAGGAAG+AGG | 0.518270 | 2:-77065407 | None:intergenic |
CAATAATGCTCTTTCTCATG+AGG | 0.525022 | 2:+77065685 | MsaT010723.1:CDS |
ACGAAGTTATGAGGAAGTTG+TGG | 0.528730 | 2:+77065916 | MsaT010723.1:CDS |
TTGAACGTGAGGATCCTGTT+AGG | 0.532080 | 2:+77066749 | MsaT010723.1:CDS |
CATTCTTCTACAACAGGTGA+TGG | 0.532486 | 2:+77066028 | MsaT010723.1:CDS |
CTAGTTGTGAAGGTCTATGC+TGG | 0.539897 | 2:-77067051 | None:intergenic |
GGCCAGAGACATATATGCAT+TGG | 0.541953 | 2:+77066848 | MsaT010723.1:CDS |
GGCATGCTGATGAATAAACT+TGG | 0.547453 | 2:-77066174 | None:intergenic |
TTGGATGCTACAAGGTTGGA+AGG | 0.548278 | 2:+77066996 | MsaT010723.1:CDS |
TTGGGAAAGTATCAAAGTTG+AGG | 0.550259 | 2:+77066477 | MsaT010723.1:CDS |
CAGATTATAAATAAATTGAA+GGG | 0.550775 | 2:+77066919 | MsaT010723.1:CDS |
ATTCATAGCATTGTTAATGG+TGG | 0.554304 | 2:+77066640 | MsaT010723.1:CDS |
ATCCCTGTGATCCTCAACTT+GGG | 0.558025 | 2:-77066349 | None:intergenic |
ATGTTTGAGGAAGACGTTTG+GGG | 0.578234 | 2:+77066775 | MsaT010723.1:CDS |
AAATCCAAAACAGCACCTCT+CGG | 0.585044 | 2:-77066589 | None:intergenic |
GCAGCAGCAATAGTAGGAGG+AGG | 0.588588 | 2:-77065413 | None:intergenic |
GCATTGGCATTCTAGGCACA+TGG | 0.590416 | 2:+77066864 | MsaT010723.1:CDS |
TATATGTGGATCAAGTTCAA+AGG | 0.594302 | 2:-77065558 | None:intergenic |
CACCCAAGTTGAGGATCACA+GGG | 0.601694 | 2:+77066347 | MsaT010723.1:CDS |
CGTTTATCGAAAAGATCTGG+TGG | 0.602238 | 2:+77066322 | MsaT010723.1:CDS |
AAGGAAAATTGGATGCTACA+AGG | 0.606455 | 2:+77066988 | MsaT010723.1:CDS |
CCTGTGATCCTCAACTTGGG+TGG | 0.609546 | 2:-77066346 | None:intergenic |
GTGTTGGTTATGGTTTCAAG+TGG | 0.612035 | 2:+77066284 | MsaT010723.1:CDS |
AGCCTGTGAAGGCTGTGATA+GGG | 0.615111 | 2:+77066819 | MsaT010723.1:CDS |
AGTGATTATAGTTTAAGCAG+TGG | 0.619865 | 2:+77065524 | MsaT010723.1:CDS |
TGTTTGAGGAAGACGTTTGG+GGG | 0.623857 | 2:+77066776 | MsaT010723.1:CDS |
TAGTTGTATGAGTCTATATG+TGG | 0.625308 | 2:-77065572 | None:intergenic |
ACAGCAGCAGCAATAGTAGG+AGG | 0.628822 | 2:-77065416 | None:intergenic |
TTGTTGATACTCATGCTGGA+TGG | 0.638387 | 2:-77065471 | None:intergenic |
TGGATGCTACAAGGTTGGAA+GGG | 0.641743 | 2:+77066997 | MsaT010723.1:CDS |
CATTGGCATTCTAGGCACAT+GGG | 0.643663 | 2:+77066865 | MsaT010723.1:CDS |
GTATGCTTTAACCATATCTG+CGG | 0.649034 | 2:-77066152 | None:intergenic |
TAACAACAATGTTGAACGTG+AGG | 0.650267 | 2:+77066738 | MsaT010723.1:CDS |
CTGGTGGGCCACCCAAGTTG+AGG | 0.658509 | 2:+77066338 | MsaT010723.1:CDS |
ATGAATGTTATAGCCTGTGA+AGG | 0.667099 | 2:+77066808 | MsaT010723.1:CDS |
AAGTTATTAGGAGAAAATGG+AGG | 0.670375 | 2:-77065626 | None:intergenic |
GTTTATCGAAAAGATCTGGT+GGG | 0.689733 | 2:+77066323 | MsaT010723.1:CDS |
AAGGCTGTGATAGGGTTGAG+AGG | 0.704778 | 2:+77066827 | MsaT010723.1:CDS |
GTTGTTTCGGAGAATCCGAG+AGG | 0.745211 | 2:+77066574 | MsaT010723.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 77065140 | 77067059 | 77065140 | ID=MsaG010723 |
Chr2 | mRNA | 77065140 | 77067059 | 77065140 | ID=MsaT010723.1;Parent=MsaG010723 |
Chr2 | exon | 77065140 | 77067059 | 77065140 | ID=MsaT010723.1.exon1;Parent=MsaT010723.1 |
Chr2 | CDS | 77065140 | 77067059 | 77065140 | ID=cds.MsaT010723.1;Parent=MsaT010723.1 |
Gene Sequence |
Protein sequence |