AlfalfaGEDB | MsaG010726

M. sativa ssp. caerulea / MsaG010726

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010726	XP_013465417.1	87.805	656	35	3	1	611	1	656	0.0	1149

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010726	sp\|Q9LTI5\|SCL11_ARATH	42.905	592	253	13	53	611	61	600	3.19e-149	447

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010726	tr\|A0A072VCF8\|A0A072VCF8_MEDTR	87.805	656	35	3	1	611	1	656	0.0	1149

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TFs/TRs:

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Gene ID	Type	Classification
MsaG010726	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010726	MtrunA17_Chr2g0328411	87.615	654	36	3	1	609	1	654	0.0	1143
MsaG010726	MtrunA17_Chr2g0328431	84.909	656	54	3	1	611	1	656	0.0	1120
MsaG010726	MtrunA17_Chr2g0328401	75.629	636	109	3	1	590	1	636	0.0	959
MsaG010726	MtrunA17_Chr4g0031741	52.474	667	246	13	1	611	1	652	0.0	641
MsaG010726	MtrunA17_Chr7g0238891	40.988	688	276	15	43	611	66	742	5.26e-163	484
MsaG010726	MtrunA17_Chr2g0328391	41.504	665	313	13	4	611	26	671	1.46e-156	465
MsaG010726	MtrunA17_Chr4g0031721	51.461	445	178	7	198	611	249	686	2.87e-151	452
MsaG010726	MtrunA17_Chr4g0031701	43.631	628	270	17	43	611	26	628	4.78e-151	449
MsaG010726	MtrunA17_Chr4g0031731	43.312	628	272	17	43	611	26	628	2.02e-147	440
MsaG010726	MtrunA17_Chr4g0031711	48.451	452	189	7	195	611	293	735	1.49e-144	436

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010726	AT2G29060.2	42.787	610	292	15	49	610	56	656	9.26e-155	460
MsaG010726	AT5G59450.1	42.905	592	253	13	53	611	61	600	3.24e-150	447
MsaG010726	AT2G29060.1	41.113	647	287	17	49	610	56	693	5.50e-150	449
MsaG010726	AT2G37650.2	39.692	650	292	14	49	610	65	702	2.76e-145	437
MsaG010726	AT2G37650.1	39.692	650	292	14	49	610	77	714	4.70e-145	437
MsaG010726	AT1G07530.1	47.403	462	211	6	181	611	307	767	1.11e-140	427
MsaG010726	AT3G46600.3	51.621	401	168	3	237	611	149	549	2.22e-138	414
MsaG010726	AT3G46600.1	51.621	401	168	3	237	611	181	581	2.68e-138	415
MsaG010726	AT3G46600.2	53.514	370	151	2	263	611	4	373	3.99e-137	405
MsaG010726	AT2G29065.1	52.468	385	153	6	257	611	246	630	1.13e-131	400

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Find 128 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTCCTGCAACATGCA+TGG	0.559801	2:-77089049	None:intergenic
AAACCAAGAGGCTGATATGA+TGG	0.515320	2:-77089858	None:intergenic
AAACTTTCATTAAGACCTGG+TGG	0.664266	2:+77090057	MsaT010726.1:CDS
AAAGGGTGGAGGAAACTGGA+CGG	0.662270	2:+77090139	MsaT010726.1:CDS
AAATCAATGTGCACAAGCTG+TGG	0.661819	2:+77089701	MsaT010726.1:CDS
AAATCTTGCAGAAAGGTGTT+TGG	0.378133	2:-77088845	None:intergenic
AACACTAAAATCTTGCAGAA+AGG	0.557457	2:-77088852	None:intergenic
AACCAAAGCAATGGTGAAGA+AGG	0.500696	2:+77090677	MsaT010726.1:CDS
AACTTCCATTGGCAACTCCA+TGG	0.540581	2:-77090389	None:intergenic
AAGAGTCGAATTCGACGACA+TGG	0.616744	2:-77089237	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	77088836	77090800	77088836	ID=MsaG010726
Chr2	mRNA	77088836	77090800	77088836	ID=MsaT010726.1;Parent=MsaG010726
Chr2	exon	77088836	77089423	77088836	ID=MsaT010726.1.exon1;Parent=MsaT010726.1
Chr2	CDS	77088836	77089423	77088836	ID=cds.MsaT010726.1;Parent=MsaT010726.1
Chr2	exon	77089498	77089983	77089498	ID=MsaT010726.1.exon2;Parent=MsaT010726.1
Chr2	CDS	77089498	77089983	77089498	ID=cds.MsaT010726.1;Parent=MsaT010726.1
Chr2	exon	77090039	77090800	77090039	ID=MsaT010726.1.exon3;Parent=MsaT010726.1
Chr2	CDS	77090039	77090800	77090039	ID=cds.MsaT010726.1;Parent=MsaT010726.1

Gene Sequence

>MsaT010726.1

ATGCTTTCTCCAAACACCTTTCTGCAAGATTTTAGTGTTCCAAACTCGGTAAACCAAGTAACAAATGGGTTTGAGTTAGAAGATTCATCATCTTCACCTTCTTCTGGCACAAGCTCAAATGGAGAATCCTTGGAAATGACAAGATATTCCAATAACATCCTAAGATACATAAGTGACATCCTCATGGATGAAGAAGATGACTTGGAGCAAAAACCATGCATGTTGCAGGAATGTTTAAGACTTCAGGCTGCTGAAAAGTCCTTCTATGATGTTCTTGGCCATAACCATCCATCCCCAAATGGTAGCACTGACCAAGATGGAAATTTCGATCGTGCTGCTAGTTTTGAGAGAAATGGCAGCAGCTGCACCACTGATAACTCATATGAATCTAACTGGGTCAACCATGTCGTCGAATTCGACTCTTCTTCCATACAACTACAAACTCCTTTAATAGAAAAAAACTACTATGACTTGACAGAAGCTGATCCAGTTGTCATCGAGACACGAGGTGCTAACCATTGTCACAACGGAACTTGGAGTTGGAATGACATTCAGCCAGTGACGGTGGAAGAAGTTTCACCTTCAACAGTTTCAGCTATTTTCTCTGATGAATTAGAGCCACCAGAGATTTTAGATGAGGTGCTGCTTTATCAGACAGGAAAGACTCTCACTCAACACCAACAAGCATCTTATAATTTTGATTCAGGAGGAAAGGCAAAGGAAACACATTCGCGTTTGAAGAAAGCATCTACTACGAAAAATGTTGCGGCTGTTGATTTGTGGACCATGCTAAATCAATGTGCACAAGCTGTGGCGAGCTACGATCAAAGGAATACAGATGAGCTACTCAAACAGATTAGGCAACACTCTTCGCCTTTTGGCAATGGACTCCAACGTTTAGCTCATTACTTTGCTAATGGTCTTGAGATAAGATTGGCTGCTGAGACGCCATCATATCAGCCTCTTGGTTTGGCAACTGCTGGAGATATGTTGAAAGCTTACAAACTATTTGTTACTGCGTCTCCTTTGCAGAGAATGACAAATGCTTTGCTAACCAAAACGATTTTCGAAATATGGCCGTGCCTCGTCAGAAAACTTTCATTAAGACCTGGTGGTCCTCCAAAGCTTCGAATTACAGGAATTGAGCTTCCTCAGCCAGGATTTAGACCTGCAGAAAGGGTGGAGGAAACTGGACGGCGTCTAGCAAACTACTGCAAGAAGTTCAATGTACCATTTGAATACAACTTCATTGCACAGAGATGGGAAACCATCCGTCTCAAGGATCTCAAGATAGACAGGAATGAAATAACTCTTGTTAGCTGTTTGTACAGACTGAAGAACCTTCCTGATGAAACTGTGGCATTGAATTGTCCAAGAGAAGCTGCGTTGAAGCTGATCAGGAAGATTAATCCAAAAGTCTTCTTCCATGGAGTTGCCAATGGAAGTTATAGCGCACCGTTTTTCCTGACTCGGTTTAAGGAAGCACTCTATCACTTCTCATCGCTGTTTGATATGTTTGAGGCTAACGTGCCTCGTGAAGACACGCAGAGGTCGATGCTTGAGAGAGGGTTGTTTGGAAGGGATTCTATAAATGTTATAGCTTGTGAGGGAGCAGAAAGGGTTGAAAGGCCTGAGACGTACAAGCAGTGGCAGGTCAGGAACAAGAGAGCTGGGTTCAAGCAAATCAGGTTGGATTCTGATTTGGTGAATGAAACCAAAGCAATGGTGAAGAAGGAATACCATAAAGATTTTGTAGTCGATGTGGATGGTAAGTGGGTTTTAAAGGGATGGAAAGGACGCATTTTGTATGCTTTATCTGCTTGGGTTCCTGCTTAA

Protein sequence

>MsaT010726.1

MLSPNTFLQDFSVPNSVNQVTNGFELEDSSSSPSSGTSSNGESLEMTRYSNNILRYISDILMDEEDDLEQKPCMLQECLRLQAAEKSFYDVLGHNHPSPNGSTDQDGNFDRAASFERNGSSCTTDNSYESNWVNHVVEFDSSSIQLQTPLIEKNYYDLTEADPVVIETRGANHCHNGTWSWNDIQPVTVEEVSPSTVSAIFSDELEPPEILDEVLLYQTGKTLTQHQQASYNFDSGGKAKETHSRLKKASTTKNVAAVDLWTMLNQCAQAVASYDQRNTDELLKQIRQHSSPFGNGLQRLAHYFANGLEIRLAAETPSYQPLGLATAGDMLKAYKLFVTASPLQRMTNALLTKTIFEIWPCLVRKLSLRPGGPPKLRITGIELPQPGFRPAERVEETGRRLANYCKKFNVPFEYNFIAQRWETIRLKDLKIDRNEITLVSCLYRLKNLPDETVALNCPREAALKLIRKINPKVFFHGVANGSYSAPFFLTRFKEALYHFSSLFDMFEANVPREDTQRSMLERGLFGRDSINVIACEGAERVERPETYKQWQVRNKRAGFKQIRLDSDLVNETKAMVKKEYHKDFVVDVDGKWVLKGWKGRILYALSAWVPA*