AlfalfaGEDB | MsaG010727

M. sativa ssp. caerulea / MsaG010727

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010727	XP_013465418.1	94.360	656	34	3	1	653	1	656	0.0	1256

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010727	sp\|O80933\|SCL9_ARATH	43.101	645	319	15	49	652	77	714	3.36e-161	483

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010727	tr\|A0A072VDE5\|A0A072VDE5_MEDTR	94.360	656	34	3	1	653	1	656	0.0	1256

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TFs/TRs:

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Gene ID	Type	Classification
MsaG010727	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010727	MtrunA17_Chr2g0328431	94.360	656	34	3	1	653	1	656	0.0	1256
MsaG010727	MtrunA17_Chr2g0328411	90.214	654	61	3	1	651	1	654	0.0	1188
MsaG010727	MtrunA17_Chr2g0328401	80.031	636	123	4	1	632	1	636	0.0	1030
MsaG010727	MtrunA17_Chr4g0031741	53.623	690	245	12	1	653	1	652	0.0	671
MsaG010727	MtrunA17_Chr7g0238891	43.129	684	309	13	43	653	66	742	8.64e-180	528
MsaG010727	MtrunA17_Chr2g0328391	42.986	663	348	14	4	653	26	671	8.93e-170	500
MsaG010727	MtrunA17_Chr4g0031701	45.182	633	307	15	37	653	20	628	2.16e-166	490
MsaG010727	MtrunA17_Chr4g0031721	53.092	469	200	7	198	653	225	686	1.61e-165	490
MsaG010727	MtrunA17_Chr4g0031711	43.070	671	314	18	37	653	79	735	1.97e-163	486
MsaG010727	MtrunA17_Chr4g0031731	44.866	633	309	15	37	653	20	628	1.10e-162	481

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010727	AT2G29060.2	43.265	631	301	13	49	652	56	656	8.50e-166	490
MsaG010727	AT2G37650.1	43.101	645	319	15	49	652	77	714	3.42e-162	483
MsaG010727	AT2G37650.2	43.101	645	319	15	49	652	65	702	3.50e-162	482
MsaG010727	AT2G29060.1	42.434	641	329	12	49	652	56	693	4.25e-162	482
MsaG010727	AT5G59450.1	50.753	465	212	8	202	653	140	600	1.44e-155	462
MsaG010727	AT1G07530.1	49.367	474	224	6	193	653	297	767	4.77e-155	466
MsaG010727	AT3G46600.3	51.556	450	192	7	214	653	116	549	1.05e-148	442
MsaG010727	AT3G46600.1	51.225	449	195	6	214	653	148	581	1.28e-148	443
MsaG010727	AT3G46600.2	56.216	370	159	2	287	653	4	373	2.81e-146	429
MsaG010727	AT2G29065.1	41.311	656	326	16	22	653	10	630	3.04e-144	434

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Find 142 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCTTCCACCATCAC+TGG	0.518831	2:-77092402	None:intergenic
AAACATTCCTGCAACATACA+GGG	0.594260	2:-77092063	None:intergenic
AAAGGGTGGAGGAAACCGGA+CGG	0.693036	2:+77093153	MsaT010727.1:CDS
AAATCAATGTGCACAAGCTG+TGG	0.661819	2:+77092713	MsaT010727.1:CDS
AAATCTTGCAGAAAGGTGTT+TGG	0.378133	2:-77091859	None:intergenic
AACACTAAAATCTTGCAGAA+AGG	0.557457	2:-77091866	None:intergenic
AACTGGATCAGCTTCTGTCA+AGG	0.571830	2:-77092316	None:intergenic
AACTTCCATTGGCAACTCCA+TGG	0.540581	2:-77093403	None:intergenic
AAGATTCGAATTCGACGACA+TGG	0.612871	2:-77092251	None:intergenic
AAGCTCAAATGGAGAATCCT+TGG	0.463718	2:+77091960	MsaT010727.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	77091850	77093811	77091850	ID=MsaG010727
Chr2	mRNA	77091850	77093811	77091850	ID=MsaT010727.1;Parent=MsaG010727
Chr2	exon	77091850	77093811	77091850	ID=MsaT010727.1.exon1;Parent=MsaT010727.1
Chr2	CDS	77091850	77093811	77091850	ID=cds.MsaT010727.1;Parent=MsaT010727.1

Gene Sequence

>MsaT010727.1

ATGCTTTCTCCAAACACCTTTCTGCAAGATTTTAGTGTTCCAAACTCAGTAAACCAAGTAACAAATGGGTTTGAATTAGAAGATTCACCATCTTCACCTTCTTCTGGCACAAGCTCAAATGGAGAATCCTTGGAACCGACAAGATATTCCAATAACATCCTAAGATACATAAGTGACATCCTCATGGATGAAGAAGATGACTTGGAGCAAAATCCCTGTATGTTGCAGGAATGTTTAAGACTTCAGGCTGCTGAAAAGTCCTTCTATGATGTTCTTGGCCATAACCAGCCTTCACCAAATGATAGCACTGACCCAAATGGAAATTTCGATCGCGCTGCTAGTTTTGAGAGAAATGGCAGCAGCTGCATCGCTGGTAACTCATATGAATCTAACTGTGTCAACCATGTCGTCGAATTCGAATCTTCTTCCATACAACTACAAAGTCCTTTAATAGAAAAAAACTATGCCTTGACAGAAGCTGATCCAGTTGTCATCGAGACACAAGGTGCTAACCATTGTCATAACGGAACTTGGAGTTGGAATGACATTCAGCCAGTGATGGTGGAAGAAGTTTTACCTTCAACAGTACCAGAAAAAAGAAGTCGTAAGATGGATAATGATAATGATACTTGTAATGAACAAGAGGGAAGAGGTAGCAAGGTTTCAGCTATTTTCTCTGATGAATTAGAGCCACCAGAGATTTTAGATGAGGTACTGCTTTATCAGAAAGGAAAGACTCTCACTCAACACCAACAAGCATCACATAATGTTGATTCAGGAGGAAAGGCAAAGGAAACACATTCGCGTTTGAAGAAAGCATCTACTACAAACAATGCCGCGGCTGTGGATTTGTGGACCATGCTAAATCAATGTGCACAAGCTGTGGCGAGCTACGATCAAAGGAATACAGATGAGCTACTCAAACAGATTAGGCAACACTCTTTGTCTTTTGGGGATGGACTCCAGCGTTTAGCTCATTACTTTGCTAATGGTCTTGAGATAAGATTGGCTGCTGAGACGCCATCATATCAGCCTCTTGATGTGGCAACTGCTGGAGATATGTTGAAAGCTTACAAACTATTTGTTACCGCGTCTCCTTTGCAGAGAGTGACAAATACTTTGCTAACCAAAACGATTTTCAAAATAGTGAACAACGAGAGCAGCGTTCATATTATTGATTTTGGAATTTGCTATGGTTTCCAGTGGCCGTGCCTCGTCAGAAGACTATCATTAAGACCTGGTGGTCCTCCAAAGCTTCGAATTACAGGAATTGAGCTTCCTCGGCCAGGATTTAGACCTGCAGAAAGGGTGGAGGAAACCGGACGGCGTCTAGCAAACTACTGCAAGAAGTTCAATGTACCATTTGAATACAACTTCATTGCACAGAAATGGGAAACCATCTGCCTGGAGGATCTAAAGATAGACAGGAATGAAATAACTCTTGTTAGCTGTTTGTACAGACTGAAGAACCTTCCTGATGAAACTGTGGCATTGAATTGTCCAAGAGAAGCTGTGTTGAAGCTGATCAGGATGATTAATCCAAAAGTATTCTTCCATGGAGTTGCCAATGGAAGTTATAGCGCACCGTTTTTCCTGACTCGGTTTAAGGAAGCACTCTACCACTTCTCATCGTTGTTTGATATGTTTGAGGCTAACGTGCCTCGTGAAGACATGCAGAGATTGATGCTTGAGAGAGGGTTGTTTGGAAGAGATGCCATAAATGTTATAGCTTGTGAGGGTGCAGAAAGGGTTGAAAGGCCTGAGACCTACAAGCAGTGGCAGGTCAGGAATAAGAGAGCTGGGTTCAAGCAAATCAGGTTGGATTCTGATTTAGTGAATGAAACGAAAACAATCGTGAAGGAATACCATAAAGATTTTGTAGTCGATGTGGATGGTAAGTGGGTTTTGCAGGGATGGAAGGGACGCATTTTGAATGCTTTATCAGCTTGGGTTCCTGCTTAA

Protein sequence

>MsaT010727.1

MLSPNTFLQDFSVPNSVNQVTNGFELEDSPSSPSSGTSSNGESLEPTRYSNNILRYISDILMDEEDDLEQNPCMLQECLRLQAAEKSFYDVLGHNQPSPNDSTDPNGNFDRAASFERNGSSCIAGNSYESNCVNHVVEFESSSIQLQSPLIEKNYALTEADPVVIETQGANHCHNGTWSWNDIQPVMVEEVLPSTVPEKRSRKMDNDNDTCNEQEGRGSKVSAIFSDELEPPEILDEVLLYQKGKTLTQHQQASHNVDSGGKAKETHSRLKKASTTNNAAAVDLWTMLNQCAQAVASYDQRNTDELLKQIRQHSLSFGDGLQRLAHYFANGLEIRLAAETPSYQPLDVATAGDMLKAYKLFVTASPLQRVTNTLLTKTIFKIVNNESSVHIIDFGICYGFQWPCLVRRLSLRPGGPPKLRITGIELPRPGFRPAERVEETGRRLANYCKKFNVPFEYNFIAQKWETICLEDLKIDRNEITLVSCLYRLKNLPDETVALNCPREAVLKLIRMINPKVFFHGVANGSYSAPFFLTRFKEALYHFSSLFDMFEANVPREDMQRLMLERGLFGRDAINVIACEGAERVERPETYKQWQVRNKRAGFKQIRLDSDLVNETKTIVKEYHKDFVVDVDGKWVLQGWKGRILNALSAWVPA*