AlfalfaGEDB | MsaG010768

M. sativa ssp. caerulea / MsaG010768

KEGG: -
GO: -
PFAM: PF13837.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010768	XP_003597439.1	95.759	448	16	2	1	448	1	445	0.0	883

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010768	tr\|G7IUC5\|G7IUC5_MEDTR	95.759	448	16	2	1	448	1	445	0.0	883

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TFs/TRs:

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Gene ID	Type	Classification
MsaG010768	TF	Trihelix

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000045	MsaG010768	0.808362	5.473272e-50	8.984714e-48
MsaG000107	MsaG010768	0.804402	3.709088e-49	5.545732e-47
MsaG000117	MsaG010768	0.861870	1.496018e-63	1.249198e-60
MsaG000128	MsaG010768	0.833693	8.359642e-56	2.693347e-53
MsaG000180	MsaG010768	0.818352	3.575434e-52	7.530722e-50
MsaG000190	MsaG010768	0.849024	7.997198e-60	4.192529e-57
MsaG000192	MsaG010768	0.835742	2.565536e-56	8.786540e-54
MsaG000236	MsaG010768	0.872466	6.386908e-67	8.222152e-64
MsaG000237	MsaG010768	0.837902	7.254927e-57	2.652846e-54
MsaG000287	MsaG010768	0.851104	2.105999e-60	1.185687e-57

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010768	MtrunA17_Chr2g0328901	95.759	448	16	2	1	448	1	445	0.0	883
MsaG010768	MtrunA17_Chr1g0201951	47.500	360	162	8	85	419	92	449	1.99e-95	294
MsaG010768	MtrunA17_Chr6g0463911	46.450	338	154	4	103	414	105	441	5.12e-83	262
MsaG010768	MtrunA17_Chr7g0265561	46.748	246	106	7	4	243	3	229	8.48e-60	202
MsaG010768	MtrunA17_Chr1g0179561	60.248	161	58	3	84	243	94	249	9.53e-56	192
MsaG010768	MtrunA17_Chr1g0179561	41.441	111	61	1	310	416	371	481	2.55e-23	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010768	AT1G21200.1	39.787	470	205	12	1	419	1	443	4.89e-89	278
MsaG010768	AT1G21200.2	39.787	470	205	12	1	419	1	443	4.89e-89	278
MsaG010768	AT1G76870.2	42.651	347	167	10	84	419	60	385	1.43e-71	231
MsaG010768	AT1G76870.1	42.651	347	167	10	84	419	60	385	1.43e-71	231
MsaG010768	AT1G76870.3	42.651	347	167	10	84	419	60	385	1.43e-71	231
MsaG010768	AT3G10040.1	41.152	243	126	4	11	243	6	241	2.21e-43	158

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Find 116 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTTGACTTCCAAGCC+AGG	0.526284	2:-77555410	MsaT010768.1:CDS
AAAGCTGAAGCAGAGAGAGC+AGG	0.565355	2:-77555265	MsaT010768.1:CDS
AAATGTTGACTTCCAAGCCA+GGG	0.593930	2:-77555409	MsaT010768.1:CDS
AACTTATCCTCACACTGCTG+CGG	0.618536	2:+77555969	None:intergenic
AACTTGAGAGTGAAATGGCA+AGG	0.557312	2:-77555509	MsaT010768.1:CDS
AAGACCCTGCAAAGTCTCCG+TGG	0.649124	2:-77555479	MsaT010768.1:CDS
AAGAGGTTGAATGAGATGCT+TGG	0.576189	2:-77555924	MsaT010768.1:CDS
AAGGACTCAAGAGATCACGA+TGG	0.786747	2:-77555699	MsaT010768.1:CDS
AAGTCAAGATCATGACTATT+GGG	0.423237	2:+77555747	None:intergenic
AAGTGGACGGATAATGTGGT+TGG	0.613391	2:-77556140	MsaT010768.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	77555164	77556510	77555164	ID=MsaG010768
Chr2	mRNA	77555164	77556510	77555164	ID=MsaT010768.1;Parent=MsaG010768
Chr2	exon	77555164	77556510	77555164	ID=MsaT010768.1.exon1;Parent=MsaT010768.1
Chr2	CDS	77555164	77556510	77555164	ID=cds.MsaT010768.1;Parent=MsaT010768.1

Gene Sequence

>MsaT010768.1

ATGAATGGTTCTTCTGGTTTGGGTGGTGGGTTTTTGAGTGGTCCCGCTGGGGGTATTTTGGACCTTGAATCTCCATTGCATAGGCATCAACAACAGACTCAGTTAGCTCATGGTCAACAACATATGAATATGATAACTGGTTTGGAAAATGATGATAATAATAATCAAATTGGTTTAATTGAAGTGAAAAATTTGAATTTTGGTAAAGGAAAGGGAGTTGCTAGTTCTAATCATGATAATAGTAATGATATGAGCGAAGACGATGAGCATGGTTACGGAGAAGATGGGAATTGCGAGAATTTTTTCGATGGTGGGAAGGGGAAAAAAGGGTCTCCTTGGCAGAGAATGAAGTGGACGGATAATGTGGTTGGGCTTCTTATAGCAGTGGTGAGTTGTGTTGGTGATGATGGAACAATTAGTGGTGTGGATGGTGTTAAGAAGAAATCCGGGGTGTCACAGAAGAAGGGTAAGTGGAAAACTGTTTCTAAGATAATGATAAGTAAAGGTTGTCATGTGTCGCCGCAGCAGTGTGAGGATAAGTTCAATGACTTGAATAAGAGATATAAGAGGTTGAATGAGATGCTTGGTAGGGGAACTTGTTGTCAGGTGGTTGAGAATCCTGCATTGATGGATTCAATGGTTAACTTGTCTGCTAAGGCGAAGGATGATGTTAGAAAGATATTGAGCTCAAAACATTTGTTTTATAAAGAAATGTGTGCATACCACAATGGTCAAAGGATACCCAATAGTCATGATCTTGACTTGCATAGTTATTCGTTGGAACACGGGAAGGACTCAAGAGATCACGATGGCTCTGATGATGAAGATGAAGATAACAATGAAAGTGAGGATGATGAGTTGGATAATGGAATTAATATTAATGCACGTGGTGATGGAGGGAGAATGGAAGGGTTTTGTGATAGAAATAAATTAAGTGAGGAGGATGGCCACTTTTGGCCGCAGTCTAGTGGGATGAAGAAACTTGAGAGTGAAATGGCAAGGGTTTTTCAAGACCCTGCAAAGTCTCCGTGGGAGAAAAGAGAGTGGATTAAGGAACAGTTGTTGCAGCTCCAAGAGCAAAATGTTGACTTCCAAGCCAGGGCTTTTGAACTTCAGAAACAGCGGTTTAAGTGGTTAAGATACCGCAGCAAGAAGGATAGGGAGCTGGAGAAGCTGGCGATGGAGAACAAGAGAATGCAATTTGAAAATGAGCACAGGATCTTAAAGCTGAAGCAGAGAGAGCAGGAGGCAGAGTTCAGTAGGTCTGAGATGTCCTTAGACCCTACCTCCATTGGTATCAAGAGGCCACAAGGGAGGGAACATATCAACTTGGCTAGACAGCACTAG

Protein sequence

>MsaT010768.1

MNGSSGLGGGFLSGPAGGILDLESPLHRHQQQTQLAHGQQHMNMITGLENDDNNNQIGLIEVKNLNFGKGKGVASSNHDNSNDMSEDDEHGYGEDGNCENFFDGGKGKKGSPWQRMKWTDNVVGLLIAVVSCVGDDGTISGVDGVKKKSGVSQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNEMLGRGTCCQVVENPALMDSMVNLSAKAKDDVRKILSSKHLFYKEMCAYHNGQRIPNSHDLDLHSYSLEHGKDSRDHDGSDDEDEDNNESEDDELDNGININARGDGGRMEGFCDRNKLSEEDGHFWPQSSGMKKLESEMARVFQDPAKSPWEKREWIKEQLLQLQEQNVDFQARAFELQKQRFKWLRYRSKKDRELEKLAMENKRMQFENEHRILKLKQREQEAEFSRSEMSLDPTSIGIKRPQGREHINLARQH*