Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010777 | XP_024632563.1 | 81.379 | 145 | 2 | 1 | 1 | 120 | 1 | 145 | 4.37e-66 | 236 |
MsaG010777 | XP_024632563.1 | 94.044 | 319 | 18 | 1 | 121 | 439 | 424 | 741 | 0.0 | 631 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010777 | sp|Q6NQJ7|FRS4_ARATH | 52.615 | 325 | 142 | 7 | 123 | 438 | 410 | 731 | 1.14e-96 | 308 |
MsaG010777 | sp|Q6NQJ7|FRS4_ARATH | 67.200 | 125 | 15 | 2 | 18 | 116 | 1 | 125 | 9.48e-43 | 163 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010777 | tr|A0A396JDB2|A0A396JDB2_MEDTR | 81.379 | 145 | 2 | 1 | 1 | 120 | 1 | 145 | 2.09e-66 | 236 |
MsaG010777 | tr|A0A396JDB2|A0A396JDB2_MEDTR | 94.044 | 319 | 18 | 1 | 121 | 439 | 424 | 741 | 0.0 | 631 |
Gene ID | Type | Classification |
---|---|---|
MsaG010777 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010777 | MtrunA17_Chr2g0329031 | 94.044 | 319 | 18 | 1 | 121 | 439 | 424 | 741 | 0.0 | 631 |
MsaG010777 | MtrunA17_Chr2g0329031 | 81.379 | 145 | 2 | 1 | 1 | 120 | 1 | 145 | 4.02e-70 | 236 |
MsaG010777 | MtrunA17_Chr1g0207551 | 47.479 | 238 | 119 | 3 | 122 | 356 | 452 | 686 | 6.30e-60 | 209 |
MsaG010777 | MtrunA17_Chr1g0207551 | 59.574 | 94 | 37 | 1 | 8 | 100 | 28 | 121 | 1.63e-24 | 106 |
MsaG010777 | MtrunA17_Chr3g0080351 | 47.748 | 222 | 111 | 2 | 122 | 338 | 486 | 707 | 2.80e-58 | 205 |
MsaG010777 | MtrunA17_Chr3g0080351 | 50.435 | 115 | 41 | 1 | 1 | 99 | 63 | 177 | 5.34e-27 | 114 |
MsaG010777 | MtrunA17_Chr5g0440451 | 36.321 | 212 | 128 | 4 | 122 | 327 | 466 | 676 | 6.40e-34 | 135 |
MsaG010777 | MtrunA17_Chr5g0448511 | 36.098 | 205 | 124 | 3 | 122 | 319 | 259 | 463 | 1.44e-33 | 132 |
MsaG010777 | MtrunA17_Chr3g0118611 | 36.893 | 206 | 125 | 3 | 122 | 322 | 363 | 568 | 9.23e-33 | 131 |
MsaG010777 | MtrunA17_Chr5g0448761 | 33.486 | 218 | 133 | 4 | 123 | 328 | 488 | 705 | 1.51e-32 | 130 |
MsaG010777 | MtrunA17_Chr2g0291581 | 34.579 | 214 | 125 | 5 | 121 | 320 | 475 | 687 | 1.84e-26 | 112 |
MsaG010777 | MtrunA17_Chr1g0202341 | 28.571 | 196 | 132 | 3 | 122 | 309 | 471 | 666 | 5.89e-19 | 89.7 |
MsaG010777 | MtrunA17_Chr2g0287061 | 34.940 | 166 | 103 | 4 | 148 | 308 | 588 | 753 | 1.34e-16 | 82.4 |
MsaG010777 | MtrunA17_Chr6g0477261 | 25.461 | 271 | 159 | 10 | 121 | 374 | 300 | 544 | 3.53e-16 | 80.9 |
MsaG010777 | MtrunA17_Chr1g0203721 | 26.768 | 198 | 135 | 3 | 121 | 310 | 485 | 680 | 5.71e-16 | 80.5 |
MsaG010777 | MtrunA17_Chr5g0441581 | 31.000 | 200 | 124 | 6 | 122 | 311 | 440 | 635 | 9.63e-16 | 79.7 |
MsaG010777 | MtrunA17_Chr3g0082121 | 33.918 | 171 | 104 | 4 | 134 | 298 | 468 | 635 | 1.80e-15 | 79.0 |
MsaG010777 | MtrunA17_Chr6g0458391 | 36.842 | 133 | 83 | 1 | 126 | 257 | 632 | 764 | 2.65e-15 | 78.6 |
MsaG010777 | MtrunA17_Chr2g0296781 | 31.126 | 151 | 96 | 3 | 121 | 263 | 411 | 561 | 2.26e-14 | 75.5 |
MsaG010777 | MtrunA17_Chr1g0196541 | 31.176 | 170 | 104 | 5 | 121 | 281 | 411 | 576 | 2.52e-14 | 75.1 |
MsaG010777 | MtrunA17_Chr2g0324011 | 27.857 | 140 | 97 | 3 | 121 | 257 | 429 | 567 | 1.25e-13 | 72.8 |
MsaG010777 | MtrunA17_Chr3g0078041 | 36.842 | 95 | 56 | 1 | 9 | 99 | 45 | 139 | 7.17e-13 | 67.8 |
MsaG010777 | MtrunA17_Chr7g0233911 | 35.354 | 99 | 60 | 1 | 5 | 99 | 25 | 123 | 6.03e-12 | 65.1 |
MsaG010777 | MtrunA17_Chr8g0363841 | 33.654 | 104 | 62 | 3 | 161 | 259 | 477 | 578 | 1.41e-11 | 66.6 |
MsaG010777 | MtrunA17_Chr2g0276841 | 31.092 | 119 | 79 | 1 | 148 | 266 | 522 | 637 | 5.75e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010777 | AT1G76320.2 | 50.751 | 333 | 134 | 6 | 123 | 438 | 410 | 729 | 1.12e-97 | 308 |
MsaG010777 | AT1G76320.2 | 67.200 | 125 | 15 | 2 | 18 | 116 | 1 | 125 | 8.71e-44 | 163 |
MsaG010777 | AT1G76320.1 | 52.615 | 325 | 142 | 7 | 123 | 438 | 410 | 731 | 1.16e-97 | 308 |
MsaG010777 | AT1G76320.1 | 67.200 | 125 | 15 | 2 | 18 | 116 | 1 | 125 | 9.64e-44 | 163 |
MsaG010777 | AT1G76320.4 | 52.615 | 325 | 142 | 7 | 123 | 438 | 410 | 731 | 1.16e-97 | 308 |
MsaG010777 | AT1G76320.4 | 67.200 | 125 | 15 | 2 | 18 | 116 | 1 | 125 | 9.64e-44 | 163 |
MsaG010777 | AT1G76320.3 | 64.840 | 219 | 72 | 2 | 123 | 337 | 410 | 627 | 2.38e-92 | 293 |
MsaG010777 | AT1G76320.3 | 67.200 | 125 | 15 | 2 | 18 | 116 | 1 | 125 | 6.69e-44 | 163 |
MsaG010777 | AT4G15090.1 | 51.244 | 201 | 97 | 1 | 122 | 321 | 472 | 672 | 3.95e-65 | 224 |
MsaG010777 | AT4G15090.1 | 53.333 | 90 | 39 | 1 | 13 | 99 | 50 | 139 | 1.98e-21 | 97.8 |
MsaG010777 | AT4G15090.5 | 51.244 | 201 | 97 | 1 | 122 | 321 | 472 | 672 | 3.95e-65 | 224 |
MsaG010777 | AT4G15090.5 | 53.333 | 90 | 39 | 1 | 13 | 99 | 50 | 139 | 1.98e-21 | 97.8 |
MsaG010777 | AT4G15090.3 | 51.244 | 201 | 97 | 1 | 122 | 321 | 472 | 672 | 3.95e-65 | 224 |
MsaG010777 | AT4G15090.3 | 53.333 | 90 | 39 | 1 | 13 | 99 | 50 | 139 | 1.98e-21 | 97.8 |
MsaG010777 | AT4G15090.2 | 51.244 | 201 | 97 | 1 | 122 | 321 | 472 | 672 | 3.95e-65 | 224 |
MsaG010777 | AT4G15090.2 | 53.333 | 90 | 39 | 1 | 13 | 99 | 50 | 139 | 1.98e-21 | 97.8 |
MsaG010777 | AT4G15090.4 | 51.244 | 201 | 97 | 1 | 122 | 321 | 472 | 672 | 3.95e-65 | 224 |
MsaG010777 | AT4G15090.4 | 53.333 | 90 | 39 | 1 | 13 | 99 | 50 | 139 | 1.98e-21 | 97.8 |
MsaG010777 | AT3G22170.2 | 52.284 | 197 | 92 | 2 | 123 | 318 | 482 | 677 | 8.06e-62 | 215 |
MsaG010777 | AT3G22170.2 | 50.485 | 103 | 35 | 1 | 13 | 99 | 69 | 171 | 5.01e-24 | 105 |
MsaG010777 | AT3G22170.1 | 52.284 | 197 | 92 | 2 | 123 | 318 | 482 | 677 | 8.06e-62 | 215 |
MsaG010777 | AT3G22170.1 | 50.485 | 103 | 35 | 1 | 13 | 99 | 69 | 171 | 5.01e-24 | 105 |
MsaG010777 | AT4G19990.1 | 47.489 | 219 | 111 | 3 | 107 | 321 | 348 | 566 | 1.98e-47 | 173 |
MsaG010777 | AT4G19990.6 | 47.489 | 219 | 111 | 3 | 107 | 321 | 405 | 623 | 2.56e-47 | 174 |
MsaG010777 | AT4G19990.6 | 50.000 | 98 | 31 | 2 | 19 | 99 | 26 | 122 | 9.58e-20 | 92.4 |
MsaG010777 | AT4G19990.2 | 47.489 | 219 | 111 | 3 | 107 | 321 | 405 | 623 | 2.56e-47 | 174 |
MsaG010777 | AT4G19990.2 | 50.000 | 98 | 31 | 2 | 19 | 99 | 26 | 122 | 9.58e-20 | 92.4 |
MsaG010777 | AT4G19990.3 | 47.489 | 219 | 111 | 3 | 107 | 321 | 405 | 623 | 3.04e-47 | 173 |
MsaG010777 | AT4G19990.3 | 50.000 | 98 | 31 | 2 | 19 | 99 | 26 | 122 | 7.64e-20 | 92.8 |
MsaG010777 | AT4G19990.4 | 47.489 | 219 | 111 | 3 | 107 | 321 | 405 | 623 | 3.04e-47 | 173 |
MsaG010777 | AT4G19990.4 | 50.000 | 98 | 31 | 2 | 19 | 99 | 26 | 122 | 7.64e-20 | 92.8 |
MsaG010777 | AT4G19990.5 | 47.489 | 219 | 111 | 3 | 107 | 321 | 405 | 623 | 3.10e-47 | 173 |
MsaG010777 | AT4G19990.5 | 50.000 | 98 | 31 | 2 | 19 | 99 | 26 | 122 | 8.27e-20 | 92.8 |
MsaG010777 | AT4G19990.7 | 47.489 | 219 | 111 | 3 | 107 | 321 | 419 | 637 | 3.19e-47 | 173 |
MsaG010777 | AT4G19990.7 | 50.000 | 98 | 31 | 2 | 19 | 99 | 40 | 136 | 6.82e-20 | 93.2 |
MsaG010777 | AT2G32250.2 | 41.624 | 197 | 114 | 1 | 123 | 318 | 417 | 613 | 5.00e-44 | 164 |
MsaG010777 | AT2G32250.2 | 45.238 | 126 | 59 | 2 | 5 | 120 | 29 | 154 | 1.63e-26 | 113 |
MsaG010777 | AT2G32250.4 | 41.624 | 197 | 114 | 1 | 123 | 318 | 417 | 613 | 5.00e-44 | 164 |
MsaG010777 | AT2G32250.4 | 45.238 | 126 | 59 | 2 | 5 | 120 | 29 | 154 | 1.63e-26 | 113 |
MsaG010777 | AT2G32250.8 | 41.624 | 197 | 114 | 1 | 123 | 318 | 376 | 572 | 5.16e-44 | 164 |
MsaG010777 | AT2G32250.8 | 48.673 | 113 | 48 | 2 | 18 | 120 | 1 | 113 | 3.26e-25 | 109 |
MsaG010777 | AT2G32250.7 | 41.624 | 197 | 114 | 1 | 123 | 318 | 376 | 572 | 5.16e-44 | 164 |
MsaG010777 | AT2G32250.7 | 48.673 | 113 | 48 | 2 | 18 | 120 | 1 | 113 | 3.09e-25 | 109 |
MsaG010777 | AT2G32250.6 | 41.624 | 197 | 114 | 1 | 123 | 318 | 417 | 613 | 5.29e-44 | 164 |
MsaG010777 | AT2G32250.6 | 45.238 | 126 | 59 | 2 | 5 | 120 | 29 | 154 | 1.63e-26 | 113 |
MsaG010777 | AT2G32250.1 | 41.624 | 197 | 114 | 1 | 123 | 318 | 417 | 613 | 5.29e-44 | 164 |
MsaG010777 | AT2G32250.1 | 45.238 | 126 | 59 | 2 | 5 | 120 | 29 | 154 | 1.63e-26 | 113 |
MsaG010777 | AT2G32250.3 | 41.624 | 197 | 114 | 1 | 123 | 318 | 417 | 613 | 5.29e-44 | 164 |
MsaG010777 | AT2G32250.3 | 45.238 | 126 | 59 | 2 | 5 | 120 | 29 | 154 | 1.63e-26 | 113 |
MsaG010777 | AT2G32250.5 | 41.624 | 197 | 114 | 1 | 123 | 318 | 417 | 613 | 6.02e-44 | 164 |
MsaG010777 | AT2G32250.5 | 47.107 | 121 | 54 | 2 | 10 | 120 | 34 | 154 | 1.45e-26 | 113 |
MsaG010777 | AT2G27110.3 | 37.073 | 205 | 125 | 3 | 123 | 323 | 297 | 501 | 4.00e-36 | 141 |
MsaG010777 | AT2G27110.2 | 37.073 | 205 | 125 | 3 | 123 | 323 | 442 | 646 | 4.70e-36 | 141 |
MsaG010777 | AT2G27110.1 | 37.073 | 205 | 125 | 3 | 123 | 323 | 442 | 646 | 4.70e-36 | 141 |
MsaG010777 | AT4G38180.1 | 33.333 | 198 | 125 | 3 | 123 | 313 | 497 | 694 | 4.16e-28 | 117 |
MsaG010777 | AT4G38170.1 | 33.498 | 203 | 126 | 4 | 122 | 317 | 261 | 461 | 3.36e-24 | 105 |
MsaG010777 | AT1G52520.1 | 30.732 | 205 | 127 | 5 | 121 | 311 | 491 | 694 | 6.40e-22 | 99.0 |
MsaG010777 | AT1G80010.1 | 29.851 | 201 | 128 | 5 | 123 | 314 | 519 | 715 | 4.16e-19 | 90.5 |
MsaG010777 | AT3G06250.2 | 35.246 | 122 | 77 | 2 | 138 | 257 | 582 | 703 | 8.52e-17 | 83.6 |
MsaG010777 | AT3G06250.1 | 35.246 | 122 | 77 | 2 | 138 | 257 | 582 | 703 | 8.52e-17 | 83.6 |
MsaG010777 | AT3G06250.3 | 35.246 | 122 | 77 | 2 | 138 | 257 | 582 | 703 | 8.52e-17 | 83.6 |
MsaG010777 | AT5G18960.2 | 34.783 | 138 | 88 | 2 | 122 | 257 | 590 | 727 | 2.67e-15 | 79.0 |
MsaG010777 | AT5G18960.1 | 34.783 | 138 | 88 | 2 | 122 | 257 | 590 | 727 | 2.67e-15 | 79.0 |
MsaG010777 | AT1G10240.2 | 26.619 | 139 | 99 | 1 | 121 | 259 | 473 | 608 | 2.21e-11 | 66.2 |
MsaG010777 | AT1G10240.1 | 26.619 | 139 | 99 | 1 | 121 | 259 | 473 | 608 | 2.21e-11 | 66.2 |
MsaG010777 | AT2G43280.1 | 35.165 | 91 | 55 | 1 | 13 | 99 | 21 | 111 | 6.62e-11 | 62.0 |
Find 90 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAAATTCCATTTCATTATT+AGG | 0.082825 | 2:+77687174 | None:intergenic |
TATGGATTCTTCTATTATTA+TGG | 0.187730 | 2:-77687214 | MsaT010777.1:CDS |
CTTCAACATTGCAACCAATA+TGG | 0.212680 | 2:+77685327 | None:intergenic |
ACCTTCTTCACCCAATATTA+TGG | 0.238949 | 2:+77685454 | None:intergenic |
AAAGTTTCAGTTCGAGGTTT+TGG | 0.254700 | 2:-77685801 | MsaT010777.1:CDS |
CAAATTCCATTTCATTATTA+GGG | 0.256855 | 2:+77687175 | None:intergenic |
GAAAGTTACTACATGGCTTT+AGG | 0.264793 | 2:-77685419 | MsaT010777.1:CDS |
TGTCACTTGTTTGAATATAA+AGG | 0.267118 | 2:-77685650 | MsaT010777.1:CDS |
AGTTAAGTAGTCGCCGATCT+AGG | 0.332224 | 2:-77687086 | MsaT010777.1:CDS |
AAGCCATGTAGTAACTTTCT+TGG | 0.341888 | 2:+77685423 | None:intergenic |
GGGGAAGGTGACTTTAATTC+AGG | 0.347918 | 2:+77685869 | None:intergenic |
CCAAGCATCAAAATTTGCTT+TGG | 0.356859 | 2:+77685901 | None:intergenic |
TGTAGACGAGCCATAATATT+GGG | 0.380324 | 2:-77685464 | MsaT010777.1:CDS |
GCAGCCTTAGCTACCCATAT+TGG | 0.380779 | 2:-77685341 | MsaT010777.1:CDS |
TTCAACATTGCAACCAATAT+GGG | 0.390404 | 2:+77685328 | None:intergenic |
TTCAAACAAGTGACAGGAAC+AGG | 0.401839 | 2:+77685658 | None:intergenic |
ATGTAGACGAGCCATAATAT+TGG | 0.410423 | 2:-77685465 | MsaT010777.1:CDS |
CCGCGTCCTTCCCCGAAAAT+CGG | 0.414368 | 2:-77686985 | MsaT010777.1:CDS |
AGAGAAAACAGGATGGTAAA+TGG | 0.421573 | 2:-77686939 | MsaT010777.1:intron |
TTGCTTTAGAGCCTCGCTTA+AGG | 0.423117 | 2:+77685394 | None:intergenic |
TCAAGACCCTAATAATGAAA+TGG | 0.426644 | 2:-77687181 | MsaT010777.1:CDS |
AGCCATGTAGTAACTTTCTT+GGG | 0.427360 | 2:+77685424 | None:intergenic |
CTATCAAAAGTTTCAGTTCG+AGG | 0.433567 | 2:-77685807 | MsaT010777.1:CDS |
CTCTATCTTCAAGAATCAAT+TGG | 0.436835 | 2:+77685936 | None:intergenic |
AGGAGGTGTTGAAGGAAGTA+AGG | 0.444639 | 2:-77685204 | MsaT010777.1:CDS |
ATCATTTAATCTCCGGACCT+TGG | 0.446449 | 2:+77685490 | None:intergenic |
TTACTTCCTTCAACACCTCC+TGG | 0.448450 | 2:+77685206 | None:intergenic |
AAAGAGTATGCAAAATCAGC+AGG | 0.457157 | 2:-77687123 | MsaT010777.1:CDS |
TATGCAAAATCAGCAGGGTT+TGG | 0.458192 | 2:-77687117 | MsaT010777.1:CDS |
TAACCATGGCTTTCAACAAA+TGG | 0.462363 | 2:-77685064 | MsaT010777.1:intron |
AGGAGTCCAGGAGGTGTTGA+AGG | 0.470185 | 2:-77685212 | MsaT010777.1:CDS |
GACAGGAGCATACTGATATA+AGG | 0.470455 | 2:-77683258 | MsaT010777.1:intron |
ATTGTTGTTCTACAAATGTC+TGG | 0.476184 | 2:-77685608 | MsaT010777.1:CDS |
GTATCCTATTGGTGAAAACT+TGG | 0.480416 | 2:-77685525 | MsaT010777.1:CDS |
GTCATATAGGTGCCTCAGCT+TGG | 0.482653 | 2:-77685102 | MsaT010777.1:intron |
AGTAAGAAGGCTGCAAGGAC+TGG | 0.483811 | 2:-77685245 | MsaT010777.1:CDS |
ATATGGTAATAAACAACAAT+CGG | 0.483815 | 2:-77687022 | MsaT010777.1:CDS |
TACATAAATCATTTAATCTC+CGG | 0.485589 | 2:+77685483 | None:intergenic |
GCTGCAAGGACTGGTGTAGC+TGG | 0.488741 | 2:-77685236 | MsaT010777.1:CDS |
TCTTGAAGATAGAGATGAAG+AGG | 0.488747 | 2:-77685927 | MsaT010777.1:CDS |
TATTATACCATCTAACGATA+AGG | 0.493893 | 2:-77685291 | MsaT010777.1:CDS |
CGGAGGAAGAATTCGACTGC+AGG | 0.496134 | 2:-77686805 | MsaT010777.1:CDS |
ATCAGAACTACATGGTAGAA+TGG | 0.499877 | 2:-77685703 | MsaT010777.1:CDS |
TCGGAGACCTTATCGTTAGA+TGG | 0.500112 | 2:+77685284 | None:intergenic |
CAAAGTATATATTGAAAAGA+TGG | 0.500276 | 2:-77685568 | MsaT010777.1:CDS |
GGTGTAGCTGGTAGGAGTCC+AGG | 0.504600 | 2:-77685224 | MsaT010777.1:CDS |
GCTTTAAGTAGGTATCCTAT+TGG | 0.508050 | 2:-77685536 | MsaT010777.1:CDS |
GCCATAATATTGGGTGAAGA+AGG | 0.513780 | 2:-77685455 | MsaT010777.1:CDS |
TATGCATGTGAAGAGAAAAC+AGG | 0.515366 | 2:-77686950 | MsaT010777.1:CDS |
TTTATATTCAAACAAGTGAC+AGG | 0.515815 | 2:+77685652 | None:intergenic |
ATCCCAAGAAAGTTACTACA+TGG | 0.521925 | 2:-77685426 | MsaT010777.1:CDS |
GCAGTTTCACAGCATGGTGC+CGG | 0.523705 | 2:-77683215 | MsaT010777.1:CDS |
ATACCATTTGTTGAAAGCCA+TGG | 0.528664 | 2:+77685061 | None:intergenic |
ATTCTTTCGATGCCCTAGAT+CGG | 0.531419 | 2:+77687073 | None:intergenic |
AAGAGGTTCAATCCAAGGTC+CGG | 0.533736 | 2:-77685502 | MsaT010777.1:CDS |
CAACAATTGCATGTCTACAT+AGG | 0.534107 | 2:+77685624 | None:intergenic |
TATTGGTGAAAACTTGGAAG+AGG | 0.534284 | 2:-77685519 | MsaT010777.1:CDS |
GTTAAGTAGTCGCCGATCTA+GGG | 0.536955 | 2:-77687085 | MsaT010777.1:CDS |
CGAAAATAATCAGAACTACA+TGG | 0.553895 | 2:-77685711 | MsaT010777.1:CDS |
GAAAATGAATACGAGTAAGA+AGG | 0.555256 | 2:-77685258 | MsaT010777.1:CDS |
GGCTTTAGGTTCCTTAAGCG+AGG | 0.555372 | 2:-77685405 | MsaT010777.1:CDS |
CATCTAAAGAAAGAAAATGA+TGG | 0.556147 | 2:-77685764 | MsaT010777.1:CDS |
GCAACCAATATGGGTAGCTA+AGG | 0.558177 | 2:+77685337 | None:intergenic |
AGTTGAGGCTGCACTGTGAA+AGG | 0.558850 | 2:+77683165 | None:intergenic |
ACCATGCTGTGAAACTGCAC+TGG | 0.564697 | 2:+77683220 | None:intergenic |
CAAGGACTGGTGTAGCTGGT+AGG | 0.565226 | 2:-77685232 | MsaT010777.1:CDS |
ATACGTTGAGTAATGATGTT+CGG | 0.569177 | 2:-77686834 | MsaT010777.1:CDS |
GCCAGTGCAGTTTCACAGCA+TGG | 0.570308 | 2:-77683221 | MsaT010777.1:CDS |
CCTCAGCTTGGAGCAGTAAG+TGG | 0.574296 | 2:-77685090 | MsaT010777.1:CDS |
GTTGAGGCTGCACTGTGAAA+GGG | 0.574401 | 2:+77683166 | None:intergenic |
AAGAATTCGACTGCAGGTGG+TGG | 0.578130 | 2:-77686799 | MsaT010777.1:intron |
GGACAAACGTCGCTTTAAGT+AGG | 0.584827 | 2:-77685547 | MsaT010777.1:CDS |
CTTGGAAGAGGTTCAATCCA+AGG | 0.589927 | 2:-77685507 | MsaT010777.1:CDS |
GTTTCACAGCATGGTGCCGG+CGG | 0.596454 | 2:-77683212 | MsaT010777.1:CDS |
TGTTGAAGGAAGTAAGGGAA+AGG | 0.609259 | 2:-77685198 | MsaT010777.1:intron |
GTAATGATGTTCGGATGAGA+CGG | 0.611128 | 2:-77686825 | MsaT010777.1:CDS |
GCAGTAAGTGGTAGTAACCA+TGG | 0.616206 | 2:-77685078 | MsaT010777.1:CDS |
AGGAAGAATTCGACTGCAGG+TGG | 0.619877 | 2:-77686802 | MsaT010777.1:CDS |
GGAGGTGTTGAAGGAAGTAA+GGG | 0.627245 | 2:-77685203 | MsaT010777.1:CDS |
CCACTTACTGCTCCAAGCTG+AGG | 0.628390 | 2:+77685090 | None:intergenic |
AAGAGTATGCAAAATCAGCA+GGG | 0.632144 | 2:-77687122 | MsaT010777.1:CDS |
AGAATGGAACACATCAAACT+CGG | 0.636732 | 2:-77685687 | MsaT010777.1:CDS |
TTGAGGCTGCACTGTGAAAG+GGG | 0.645901 | 2:+77683167 | None:intergenic |
TCATTATGGAACATAGCCGC+CGG | 0.651164 | 2:+77683196 | None:intergenic |
TGAGGCTGCACTGTGAAAGG+GGG | 0.670500 | 2:+77683168 | None:intergenic |
ATACGAGTAAGAAGGCTGCA+AGG | 0.675579 | 2:-77685250 | MsaT010777.1:CDS |
ATGATGTTCGGATGAGACGG+AGG | 0.681860 | 2:-77686822 | MsaT010777.1:CDS |
CATGTGAAGAGAAAACAGGA+TGG | 0.699872 | 2:-77686946 | MsaT010777.1:CDS |
GTAGCTGGTAGGAGTCCAGG+AGG | 0.701373 | 2:-77685221 | MsaT010777.1:CDS |
ATTGTCATGCAAATGAGTTG+AGG | 0.717124 | 2:+77683150 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 77683135 | 77687235 | 77683135 | ID=MsaG010777 |
Chr2 | mRNA | 77683135 | 77687235 | 77683135 | ID=MsaT010777.1;Parent=MsaG010777 |
Chr2 | exon | 77683135 | 77683275 | 77683135 | ID=MsaT010777.1.exon5;Parent=MsaT010777.1 |
Chr2 | CDS | 77683135 | 77683275 | 77683135 | ID=cds.MsaT010777.1;Parent=MsaT010777.1 |
Chr2 | exon | 77685065 | 77685115 | 77685065 | ID=MsaT010777.1.exon4;Parent=MsaT010777.1 |
Chr2 | CDS | 77685065 | 77685115 | 77685065 | ID=cds.MsaT010777.1;Parent=MsaT010777.1 |
Chr2 | exon | 77685199 | 77685965 | 77685199 | ID=MsaT010777.1.exon3;Parent=MsaT010777.1 |
Chr2 | CDS | 77685199 | 77685965 | 77685199 | ID=cds.MsaT010777.1;Parent=MsaT010777.1 |
Chr2 | exon | 77686800 | 77686864 | 77686800 | ID=MsaT010777.1.exon2;Parent=MsaT010777.1 |
Chr2 | CDS | 77686800 | 77686864 | 77686800 | ID=cds.MsaT010777.1;Parent=MsaT010777.1 |
Chr2 | exon | 77686940 | 77687235 | 77686940 | ID=MsaT010777.1.exon1;Parent=MsaT010777.1 |
Chr2 | CDS | 77686940 | 77687235 | 77686940 | ID=cds.MsaT010777.1;Parent=MsaT010777.1 |
Gene Sequence |
Protein sequence |