AlfalfaGEDB | MsaG010789

M. sativa ssp. caerulea / MsaG010789

KEGG: K14514
GO: GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042762 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF04873.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010789	XP_003597476.1	86.589	343	33	2	142	480	286	619	0.0	577
MsaG010789	XP_003597476.1	97.931	145	3	0	1	145	1	145	1.02e-88	294

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010789	sp\|O23116\|EIL3_ARATH	73.793	145	38	0	1	145	1	145	8.61e-65	222

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010789	tr\|G7IUG2\|G7IUG2_MEDTR	86.589	343	33	2	142	480	286	619	0.0	577
MsaG010789	tr\|G7IUG2\|G7IUG2_MEDTR	97.931	145	3	0	1	145	1	145	4.86e-89	294

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TFs/TRs:

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Gene ID	Type	Classification
MsaG010789	TF	EIL

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010789	MtrunA17_Chr2g0329151	86.589	343	33	2	142	480	286	619	0.0	577
MsaG010789	MtrunA17_Chr2g0329151	97.931	145	3	0	1	145	1	145	9.36e-93	294
MsaG010789	MtrunA17_Chr2g0329141	65.359	153	44	3	332	480	35	182	3.23e-63	203
MsaG010789	MtrunA17_Chr2g0329141	85.294	34	5	0	44	77	1	34	5.96e-11	61.6
MsaG010789	MtrunA17_Chr5g0440591	65.926	135	43	2	24	158	35	166	1.77e-53	189
MsaG010789	MtrunA17_Chr3g0118361	68.333	120	35	2	39	158	53	169	1.15e-46	171
MsaG010789	MtrunA17_Chr3g0124291	58.407	113	38	2	35	145	29	134	1.19e-37	142
MsaG010789	MtrunA17_Chr8g0382561	58.333	120	42	3	32	149	16	129	4.63e-36	139
MsaG010789	MtrunA17_Chr6g0476291	67.213	61	19	1	94	154	1	60	4.36e-22	95.9
MsaG010789	MtrunA17_Chr6g0476301	65.574	61	20	1	94	154	1	60	1.04e-21	96.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010789	AT1G73730.1	73.793	145	38	0	1	145	1	145	8.75e-66	222
MsaG010789	AT1G73730.1	29.070	344	187	13	138	480	280	567	7.92e-11	64.7
MsaG010789	AT1G73730.2	78.906	128	27	0	18	145	6	133	1.68e-63	216
MsaG010789	AT1G73730.2	29.070	344	187	13	138	480	268	555	7.26e-11	64.7
MsaG010789	AT2G27050.1	63.433	134	48	1	25	158	36	168	1.47e-52	187
MsaG010789	AT3G20770.1	65.625	128	42	1	24	151	35	160	5.08e-51	183
MsaG010789	AT5G10120.1	54.310	116	51	1	29	144	14	127	4.73e-36	139
MsaG010789	AT5G65100.1	48.000	125	52	1	33	144	33	157	6.18e-32	129
MsaG010789	AT5G21120.3	53.968	126	57	1	31	155	41	166	1.58e-29	121
MsaG010789	AT5G21120.1	53.968	126	57	1	31	155	41	166	1.58e-29	121

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Find 130 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCCAAAATCTAATAA+TGG	0.379865	2:+77865270	None:intergenic
AAAAGGAATGATGGTGATGG+TGG	0.555478	2:+77865240	None:intergenic
AAAATGTCGAGGGCACAAGA+TGG	0.611433	2:-77866794	MsaT010789.1:CDS
AAAGCTCGTGGATTTGTGTA+TGG	0.575890	2:-77866734	MsaT010789.1:CDS
AAAGTGTGTATATGAGTAGA+CGG	0.616455	2:-77865569	MsaT010789.1:CDS
AAATGTCGAGGGCACAAGAT+GGG	0.530650	2:-77866793	MsaT010789.1:CDS
AACAGAACCAACACCATCGT+CGG	0.629982	2:+77866055	None:intergenic
AACCATCAGATAACTCGCGA+AGG	0.657732	2:-77865992	MsaT010789.1:CDS
AACCCATGATATCATCAAAA+AGG	0.311917	2:+77865223	None:intergenic
AACTGAGAATAGTGCAGCGG+TGG	0.612241	2:+77865546	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	77865185	77867967	77865185	ID=MsaG010789
Chr2	mRNA	77865185	77867967	77865185	ID=MsaT010789.1;Parent=MsaG010789
Chr2	exon	77865185	77866193	77865185	ID=MsaT010789.1.exon3;Parent=MsaT010789.1
Chr2	CDS	77865185	77866193	77865185	ID=cds.MsaT010789.1;Parent=MsaT010789.1
Chr2	exon	77866626	77867024	77866626	ID=MsaT010789.1.exon2;Parent=MsaT010789.1
Chr2	CDS	77866626	77867024	77866626	ID=cds.MsaT010789.1;Parent=MsaT010789.1
Chr2	exon	77867933	77867967	77867933	ID=MsaT010789.1.exon1;Parent=MsaT010789.1
Chr2	CDS	77867933	77867967	77867933	ID=cds.MsaT010789.1;Parent=MsaT010789.1

Gene Sequence

>MsaT010789.1

ATGGGTGAACTCGTTGAAATTGGAGCTGATATTGGCTCAGATTTAGATGTCGACGATATTAGATATCACAATATTCCGGAGAAAGATGTCAGTGATGAAGAGATTGAGGCAGAAGATTTGGAGAGGCGGATGTGGAAGGATCGTATCAAACTCAAAAGGCTCAAGGAAAAACAAAAGCTTGCAGCACAGCAAGCCCTAGAGAAGCAAAAGCCGAGGCAGTCATCTGATCAAGCTCGTAGGAAGAAAATGTCGAGGGCACAAGATGGGATTCTTAAGTACATGCTGAAGCTCATGGAAGTGTGCAAAGCTCGTGGATTTGTGTATGGAATCATTCCTGAGAAGGGAAAACCAGTTAGTGGTTCCTCTGATAACATTAGAGCTTGGTGGAAAGAAAAGGTGAAGTTTGATAGGAATGGTCCTGCAGCCATAGCCAAGCAGCCTAGTAGCGATAACGGTACGTCTGGAATTACCGATATGCCAACTGGTGTTCTTCTTCTTGAGTATAAGCAACCTGCTGCTAGTAGTGCTAGCAACTATGATGTTGATGGTACCGACGATGGTGTTGGTTCTGTTTCTTCTAAGGAAGACAGGAGCAATCAGTTTATGGATGCCGAACCATCAGATAACTCGCGAAGGAATTCTGTCCAAGATTCCGATCGAGCTAAGAAGCAACCTAGGAAGAAACGACCACGTTCGAGGTCAAGTGCAGCCGACACATTACCAGCACAATCTGACAATGAAATTTTGCATGTTGAACCTAGAAGTAAACTGCCGAATATGAATGAGAGAGACGAAACACATGTAGCTGCACTCCAGATTCACGGGAATGAACAGGTCAATGAGACAGAATCTGCTTTGAGGCCGCCGGAAATAAGACATGAGGGGCCAAGTCATCTATCTGGAAGCGAGGTGCCAGTTCATTTATCAGGACACGGGGTGCCAGTTCATTTATCAGGACACGGGGTGCCAGTTCATGTAACAGCACCCGGGTTTGATCATTACTCTTATATGCATGCAAACAGTATGATTTCCTCGGAAAGTGTGTATATGAGTAGACGGCCACCGCTGCACTATTCTCAGTTGCAAAACCCTGTTATGCCTCATGAAGCTGATTATAATCTGTACAATCCAGTCACAAGATATGGTCCCAGTCAGGATGGGCAACATCAACATCTGCAGCCTGGTCCCGCCGCGAACAGTGAACCAATTAGGCAACCAGAGAATGCTGCAATAACTATGCCTGCAGCAAATATGAATGGTGATGAAATTATCGGAGGAGGCTTGAATTATCTTGCTAAAGACACATTCCCAAACGAGCTGGATAGGTTTGGATCACCATTATTAGATTTTGGAGTTTTTGAGAATCCACCATCACCATCATTCCTTTTTGATGATATCATGGGTTTGGGTGACGATGAAATGATGCAGTACTTTGGAGCATAG

Protein sequence

>MsaT010789.1

MGELVEIGADIGSDLDVDDIRYHNIPEKDVSDEEIEAEDLERRMWKDRIKLKRLKEKQKLAAQQALEKQKPRQSSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGSSDNIRAWWKEKVKFDRNGPAAIAKQPSSDNGTSGITDMPTGVLLLEYKQPAASSASNYDVDGTDDGVGSVSSKEDRSNQFMDAEPSDNSRRNSVQDSDRAKKQPRKKRPRSRSSAADTLPAQSDNEILHVEPRSKLPNMNERDETHVAALQIHGNEQVNETESALRPPEIRHEGPSHLSGSEVPVHLSGHGVPVHLSGHGVPVHVTAPGFDHYSYMHANSMISSESVYMSRRPPLHYSQLQNPVMPHEADYNLYNPVTRYGPSQDGQHQHLQPGPAANSEPIRQPENAAITMPAANMNGDEIIGGGLNYLAKDTFPNELDRFGSPLLDFGVFENPPSPSFLFDDIMGLGDDEMMQYFGA*