AlfalfaGEDB | MsaG010820

M. sativa ssp. caerulea / MsaG010820

KEGG: -
GO: GO:0000003 GO:0000988 GO:0000989 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0010099 GO:0010100 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141
PFAM: PF00643.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010820	XP_003597525.1	97.119	243	7	0	1	243	1	243	6.79e-177	496

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010820	sp\|Q9SID1\|BBX25_ARATH	57.317	246	94	5	1	243	1	238	2.24e-93	277

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010820	tr\|G7IHV4\|G7IHV4_MEDTR	97.119	243	7	0	1	243	1	243	3.24e-177	496

TFs/TRs:

Gene ID	Type	Classification
MsaG010820	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010820	MtrunA17_Chr2g0329511	97.119	243	7	0	1	243	1	243	0.0	496
MsaG010820	MtrunA17_Chr4g0033641	70.492	244	67	3	1	243	1	240	2.58e-124	352
MsaG010820	MtrunA17_Chr2g0314671	58.333	108	45	0	1	108	1	108	5.11e-42	144
MsaG010820	MtrunA17_Chr1g0155811	35.338	266	142	6	1	242	1	260	9.28e-37	130
MsaG010820	MtrunA17_Chr3g0142221	34.529	223	123	5	1	217	1	206	9.52e-35	124
MsaG010820	MtrunA17_Chr3g0145061	53.211	109	50	1	1	108	1	109	7.03e-34	122
MsaG010820	MtrunA17_Chr4g0035651	48.214	112	57	1	1	111	1	112	1.12e-32	118
MsaG010820	MtrunA17_Chr5g0405151	46.939	98	49	2	1	98	1	95	2.71e-23	93.2
MsaG010820	MtrunA17_Chr3g0136701	42.708	96	46	1	5	100	6	92	1.92e-17	79.7
MsaG010820	MtrunA17_Chr7g0220721	40.217	92	46	1	5	96	26	108	7.41e-17	79.0
MsaG010820	MtrunA17_Chr7g0220721	50.000	50	25	0	5	54	69	118	3.39e-11	62.4
MsaG010820	MtrunA17_Chr1g0150471	40.217	92	46	1	5	96	6	88	2.43e-16	76.6
MsaG010820	MtrunA17_Chr4g0072871	36.957	92	49	1	5	96	22	104	2.92e-15	74.3
MsaG010820	MtrunA17_Chr7g0268691	39.796	98	49	2	5	102	20	107	3.84e-13	68.2
MsaG010820	MtrunA17_Chr5g0429341	33.333	96	55	1	1	96	1	87	6.51e-12	64.7
MsaG010820	MtrunA17_Chr3g0120711	35.417	96	52	2	1	96	1	86	5.46e-11	62.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010820	AT2G31380.1	57.317	246	94	5	1	243	1	238	2.27e-94	277
MsaG010820	AT1G06040.1	57.087	254	92	7	1	243	1	248	8.89e-94	276
MsaG010820	AT1G06040.2	62.941	170	52	4	1	161	1	168	1.21e-67	207
MsaG010820	AT1G78600.1	58.333	108	45	0	1	108	1	108	5.62e-41	142
MsaG010820	AT1G78600.2	58.333	108	45	0	1	108	1	108	9.98e-41	142
MsaG010820	AT4G10240.1	52.632	114	44	2	1	108	1	110	2.32e-35	124
MsaG010820	AT1G75540.1	52.174	115	52	1	1	112	1	115	4.50e-34	125
MsaG010820	AT4G39070.1	44.286	140	73	2	1	135	1	140	8.26e-31	114
MsaG010820	AT2G21320.1	48.980	98	47	2	1	98	1	95	1.71e-23	93.6
MsaG010820	AT4G38960.1	43.089	123	62	3	1	118	1	120	3.34e-23	93.2
MsaG010820	AT4G38960.6	43.089	123	62	3	1	118	1	120	3.34e-23	93.2
MsaG010820	AT5G15850.1	37.705	122	65	2	5	124	12	124	2.61e-17	80.5
MsaG010820	AT2G24790.1	40.625	96	48	1	5	100	8	94	8.51e-17	78.2
MsaG010820	AT2G24790.2	41.304	92	45	1	5	96	8	90	1.01e-16	76.6
MsaG010820	AT5G24930.1	39.583	96	49	1	5	100	6	92	1.54e-15	75.5
MsaG010820	AT4G38960.3	31.928	166	62	4	1	118	1	163	1.65e-15	73.6
MsaG010820	AT3G02380.1	40.217	92	46	1	5	96	16	98	1.79e-15	75.1
MsaG010820	AT5G15840.1	32.520	123	71	2	5	124	20	133	4.93e-15	73.9
MsaG010820	AT5G15840.2	32.520	123	71	2	5	124	20	133	6.12e-15	72.8
MsaG010820	AT2G33500.1	34.000	100	57	1	3	102	10	100	3.09e-12	65.9
MsaG010820	AT2G33500.2	34.000	100	57	1	3	102	10	100	3.17e-12	65.9
MsaG010820	AT1G28050.1	33.663	101	58	1	2	102	6	97	3.24e-12	65.9
MsaG010820	AT2G47890.1	37.647	85	44	1	5	89	13	88	6.38e-11	61.6
MsaG010820	AT2G47890.3	37.647	85	44	1	5	89	13	88	7.23e-11	61.6

Find 42 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACTTGGCATATGTCACATTT+AGG	0.154164	2:+78194537	None:intergenic
TTGGGGTGTTGATGACTTAT+TGG	0.243521	2:-78193637	MsaT010820.1:CDS
GTGAGTTTGTTCGTTGTCTT+TGG	0.277963	2:+78193737	None:intergenic
ACTTGATGTGTATTCCTCTT+AGG	0.287737	2:+78193705	None:intergenic
CTTGGCATATGTCACATTTA+GGG	0.307139	2:+78194538	None:intergenic
TGATTTGCAGAAAGGCTTCC+AGG	0.309803	2:+78193810	None:intergenic
TCACGTATGAGTTCAATTCT+AGG	0.311669	2:+78192796	None:intergenic
AGTTTCTGTGTGATGAATAA+TGG	0.342501	2:+78192845	None:intergenic
CAGAAGGATTCCATGCAGTT+TGG	0.346227	2:-78192973	MsaT010820.1:CDS
TTTGGCGCAGTTAGATTTCA+TGG	0.371828	2:+78193755	None:intergenic
TACTTTACCGTGCCTGATCT+TGG	0.385640	2:-78192748	MsaT010820.1:CDS
TGGTTGCTAGCATGAGTTAC+TGG	0.389027	2:+78192865	None:intergenic
GCACAGCAAATCATTGTTGC+AGG	0.405281	2:+78194666	None:intergenic
TTCCATGCAGTTTGGAGAGA+TGG	0.460835	2:-78192965	MsaT010820.1:CDS
CATTTGCTTCATCCAAGATC+AGG	0.470656	2:+78192736	None:intergenic
AGGAACTTCAGCTGCAGCCA+TGG	0.492244	2:+78192894	None:intergenic
AAGTCAGGCACTTGCTGAGA+AGG	0.502751	2:+78193669	None:intergenic
TGATGTGTATTCCTCTTAGG+TGG	0.511604	2:+78193708	None:intergenic
TTTGTTAGACATGTGTGACT+TGG	0.512562	2:+78192822	None:intergenic
CTCACTTGGAACCACCTAAG+AGG	0.518615	2:-78193719	MsaT010820.1:CDS
CACCAGCGCTTCCTTGCGAC+AGG	0.519290	2:-78193789	MsaT010820.1:CDS
AGCGCTGGTGATTTGCAGAA+AGG	0.527070	2:+78193802	None:intergenic
TGCAGTTTGGAGAGATGGAA+TGG	0.544384	2:-78192960	MsaT010820.1:CDS
AGTTAGATTTCATGGCCACT+TGG	0.554538	2:+78193763	None:intergenic
TTCCATCTCTCCAAACTGCA+TGG	0.555768	2:+78192963	None:intergenic
TACCTGTCGCAAGGAAGCGC+TGG	0.556206	2:+78193787	None:intergenic
AGACAACGAACAAACTCACT+TGG	0.575938	2:-78193733	MsaT010820.1:CDS
GACGAATCGATTCATTTACC+TGG	0.577934	2:-78193828	MsaT010820.1:CDS
GATGGAATGGTTCACAGAGG+AGG	0.579999	2:-78192947	MsaT010820.1:CDS
ATGGAATGGTTCACAGAGGA+GGG	0.583205	2:-78192946	MsaT010820.1:CDS
AGCTTGCAAGCAAGCATCAG+AGG	0.588673	2:-78194590	MsaT010820.1:CDS
TGACTTCACTCAAGAAGCCA+TGG	0.595191	2:-78192911	MsaT010820.1:CDS
AATAAGTCATCAACACCCCA+AGG	0.619248	2:+78193639	None:intergenic
GCTTCATCCAAGATCAGGCA+CGG	0.625901	2:+78192741	None:intergenic
CCACTTGGATACCTGTCGCA+AGG	0.630313	2:+78193778	None:intergenic
ATAAGTCATCAACACCCCAA+GGG	0.636431	2:+78193640	None:intergenic
GCATGAGTTACTGGAAGCTG+AGG	0.655267	2:+78192874	None:intergenic
TAAGTCATCAACACCCCAAG+GGG	0.667753	2:+78193641	None:intergenic
AGACAGGGCACTCTTCTGTG+AGG	0.698154	2:-78193856	MsaT010820.1:CDS
CCTTGCGACAGGTATCCAAG+TGG	0.753321	2:-78193778	MsaT010820.1:CDS
AAGTCATCAACACCCCAAGG+GGG	0.775594	2:+78193642	None:intergenic
AGAGATGGAATGGTTCACAG+AGG	0.780922	2:-78192950	MsaT010820.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	78192744	78194721	78192744	ID=MsaG010820
Chr2	mRNA	78192744	78194721	78192744	ID=MsaT010820.1;Parent=MsaG010820
Chr2	exon	78192744	78192992	78192744	ID=MsaT010820.1.exon3;Parent=MsaT010820.1
Chr2	CDS	78192744	78192992	78192744	ID=cds.MsaT010820.1;Parent=MsaT010820.1
Chr2	exon	78193608	78193907	78193608	ID=MsaT010820.1.exon2;Parent=MsaT010820.1
Chr2	CDS	78193608	78193907	78193608	ID=cds.MsaT010820.1;Parent=MsaT010820.1
Chr2	exon	78194539	78194721	78194539	ID=MsaT010820.1.exon1;Parent=MsaT010820.1
Chr2	CDS	78194539	78194721	78194539	ID=cds.MsaT010820.1;Parent=MsaT010820.1

Gene Sequence

>MsaT010820.1

ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCTCCTGCAACAATGATTTGCTGTGCTGATGAAGCAGCTTTGTGTGCTAAATGTGATATTGAAGTTCATGCTGCTAACAAGCTTGCAAGCAAGCATCAGAGGATTCATCTTCAATCTCTCTCTAACAAGCTCCCTAAATGTGACATATGCCAAGACAAGACAGCTTTCATATTTTGTGTTGAAGACAGGGCACTCTTCTGTGAGGATTGTGACGAATCGATTCATTTACCTGGAAGCCTTTCTGCAAATCACCAGCGCTTCCTTGCGACAGGTATCCAAGTGGCCATGAAATCTAACTGCGCCAAAGACAACGAACAAACTCACTTGGAACCACCTAAGAGGAATACACATCAAGTTTCTCTTGAAACTCCTTCTCAGCAAGTGCCTGACTTTACACCCCCTTGGGGTGTTGATGACTTATTGGAGTTAGCAGACTTTAATTCTCATGACAAAAAGGATTCCATGCAGTTTGGAGAGATGGAATGGTTCACAGAGGAGGGTCTTTTTGGTGATGACTTCACTCAAGAAGCCATGGCTGCAGCTGAAGTTCCTCAGCTTCCAGTAACTCATGCTAGCAACCATTATTCATCACACAGAAACTCCAAGTCACACATGTCTAACAAAAAGCCTAGAATTGAACTCATACGTGATTATGATTATGATGATGAAGATGAGTACTTTACCGTGCCTGATCTTGGATGA

Protein sequence

>MsaT010820.1

MKIQCDVCEKAPATMICCADEAALCAKCDIEVHAANKLASKHQRIHLQSLSNKLPKCDICQDKTAFIFCVEDRALFCEDCDESIHLPGSLSANHQRFLATGIQVAMKSNCAKDNEQTHLEPPKRNTHQVSLETPSQQVPDFTPPWGVDDLLELADFNSHDKKDSMQFGEMEWFTEEGLFGDDFTQEAMAAAEVPQLPVTHASNHYSSHRNSKSHMSNKKPRIELIRDYDYDDEDEYFTVPDLG*