AlfalfaGEDB | MsaG010824

M. sativa ssp. caerulea / MsaG010824

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010824	XP_003597529.1	97.680	431	8	1	1	431	1	429	0.0	861

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010824	sp\|Q04088\|POF21_ARATH	66.027	365	93	10	1	361	1	338	3.37e-150	435

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010824	tr\|G7IHV8\|G7IHV8_MEDTR	97.680	431	8	1	1	431	1	429	0.0	861

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TFs/TRs:

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Gene ID	Type	Classification
MsaG010824	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000274	MsaG010824	0.805547	2.142649e-49	3.289811e-47
MsaG000584	MsaG010824	0.825936	6.348677e-54	1.638996e-51
MsaG000700	MsaG010824	0.813070	5.308894e-51	9.777351e-49
MsaG001132	MsaG010824	0.819348	2.128306e-52	4.601367e-50
MsaG003721	MsaG010824	0.801559	1.426013e-48	1.997125e-46
MsaG003870	MsaG010824	0.808103	6.212234e-50	1.013459e-47
MsaG004275	MsaG010824	0.803228	6.483036e-49	9.433565e-47
MsaG004361	MsaG010824	0.815033	1.967312e-51	3.806154e-49
MsaG004428	MsaG010824	0.800855	1.983620e-48	2.734197e-46
MsaG004431	MsaG010824	0.824194	1.630472e-53	4.012127e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010824	MtrunA17_Chr2g0329551	97.680	431	8	1	1	431	1	429	0.0	861
MsaG010824	MtrunA17_Chr3g0107491	45.115	348	142	10	72	406	38	349	5.92e-66	215
MsaG010824	MtrunA17_Chr5g0432701	52.941	255	67	9	72	320	51	258	5.55e-65	212
MsaG010824	MtrunA17_Chr3g0128781	44.161	274	79	8	72	335	7	216	3.86e-51	174
MsaG010824	MtrunA17_Chr4g0036071	44.318	264	88	8	109	323	213	466	2.24e-49	175
MsaG010824	MtrunA17_Chr6g0463571	42.208	308	123	12	66	366	22	281	1.45e-47	165
MsaG010824	MtrunA17_Chr1g0156051	59.712	139	53	2	176	313	343	479	1.49e-32	129
MsaG010824	MtrunA17_Chr2g0316551	38.462	156	81	2	219	374	206	346	1.39e-20	92.4
MsaG010824	MtrunA17_Chr2g0325131	45.614	114	57	2	219	327	189	302	1.22e-19	89.7
MsaG010824	MtrunA17_Chr4g0040891	46.000	100	54	0	219	318	192	291	6.93e-19	87.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010824	AT1G06070.1	73.512	336	70	6	19	352	21	339	6.28e-168	478
MsaG010824	AT2G31370.5	66.027	365	93	10	1	361	1	338	1.18e-151	435
MsaG010824	AT2G31370.2	66.027	365	93	10	1	361	1	338	3.42e-151	435
MsaG010824	AT2G31370.4	66.027	365	93	10	1	361	1	338	3.42e-151	435
MsaG010824	AT2G31370.1	66.027	365	93	10	1	361	1	338	3.42e-151	435
MsaG010824	AT2G31370.7	66.027	365	93	10	1	361	1	338	3.42e-151	435
MsaG010824	AT2G31370.3	66.027	365	93	10	1	361	1	338	3.42e-151	435
MsaG010824	AT2G31370.6	66.027	365	93	10	1	361	1	338	3.42e-151	435
MsaG010824	AT2G40620.1	49.615	260	94	7	66	324	28	251	1.44e-61	204
MsaG010824	AT1G43700.1	49.746	197	90	3	161	348	129	325	2.69e-49	171

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Find 119 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGAGATGTTAATCTC+GGG	0.567313	2:-78218154	MsaT010824.1:CDS
AAAGCCACTAGAATCTGAGC+TGG	0.591242	2:+78218576	None:intergenic
AAAGCTAATATCATCCGGCA+AGG	0.625947	2:+78218477	None:intergenic
AAATCATTGGGTCTTGGCGG+TGG	0.469321	2:-78218706	MsaT010824.1:CDS
AAGGACAAATCATTGGGTCT+TGG	0.496632	2:-78218712	MsaT010824.1:CDS
AAGTTCATAGGTCCTCCATT+TGG	0.480765	2:+78215804	None:intergenic
AATGGAAAAGGACAAATCAT+TGG	0.426956	2:-78218719	MsaT010824.1:CDS
AATTGAACTTATCCATATCA+AGG	0.549561	2:+78218374	None:intergenic
ACAAATGCAGCAGCAGCAGC+AGG	0.359774	2:-78215604	MsaT010824.1:CDS
ACACCAGCACAGCCAGTCCA+TGG	0.559692	2:-78218194	MsaT010824.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	78215494	78218740	78215494	ID=MsaG010824
Chr2	mRNA	78215494	78218740	78215494	ID=MsaT010824.1;Parent=MsaG010824
Chr2	exon	78215494	78215891	78215494	ID=MsaT010824.1.exon4;Parent=MsaT010824.1
Chr2	CDS	78215494	78215891	78215494	ID=cds.MsaT010824.1;Parent=MsaT010824.1
Chr2	exon	78216304	78216388	78216304	ID=MsaT010824.1.exon3;Parent=MsaT010824.1
Chr2	CDS	78216304	78216388	78216304	ID=cds.MsaT010824.1;Parent=MsaT010824.1
Chr2	exon	78216511	78216643	78216511	ID=MsaT010824.1.exon2;Parent=MsaT010824.1
Chr2	CDS	78216511	78216643	78216511	ID=cds.MsaT010824.1;Parent=MsaT010824.1
Chr2	exon	78218061	78218740	78218061	ID=MsaT010824.1.exon1;Parent=MsaT010824.1
Chr2	CDS	78218061	78218740	78218061	ID=cds.MsaT010824.1;Parent=MsaT010824.1

Gene Sequence

>MsaT010824.1

ATGGAAAAGGACAAATCATTGGGTCTTGGCGGTGGTTTTCCACCTCCATCAGGACGTTATCCGGGTTATTCACCAACTGGAAGTGGTTTCAATGTGAAATCTGAACCCCCATCATCGTCGTATCCGCCGCTTGCTCCTGGAACCAGCTCAGATTCTAGTGGCTTTAGTCATGATATAAGCAAAATGTCTGATAATCCTCCGAGAAATAGAGGTCATAGACGTGCTCATTCCGAGATTCTTACCTTGCCGGATGATATTAGCTTTGATAGTGACCTCGGTGTAGTTGGTGGTGCTGATGGACCGTCGTTCTCTGATGATACCGAGGAAGATTTGTTGTCCATGTACCTTGATATGGATAAGTTCAATTCGTCGTCAGCAACGTCTAATTTTCAAATGGGTGAGGGGTCTAATGCTGCCGGAGCATCGGGTTTGGCGCCAATGTCGGTAGGGCAGACATCAGGAGGAGGTACCTCTTCTGGGGAAAATATGGCAGTCGGTACTACAAATGAAAGGCCCAGAATCAGACACCAGCACAGCCAGTCCATGGATGGGTCAACAACAATCAAACCTGAGATGTTAATCTCGGGTTCAGATGACATGTCTGCAGCCGATTCCAAAAAAGCAATGTCAGCAGCCAAGCTTGCAGAACTTGCCTTGGTTGACCCCAAGCGTGCAAAAAGGATATGGGCAAATAGGCAGTCTGCGGCAAGGTCAAAAGAAAGGAAGATGCGCTATATTGCTGAGCTTGAAAGGAAAGTGCAGACATTGCAAACGGAAGCAACATCTTTGTCTGCACAGTTAACTCTCTTACAGAGAGATACAAGTGGGCTGAATTCTGAGAACAGTGAGCTGAAGCTGCGGTTGCAAACCATGGAGCAACAAGTTCACTTGCAGGATGCTTTAAATGACGCGTTAAAAGAGGAAATTACGCATTTGAAAGTACTGACTGGGCAAGCTATGCCGCCAAATGGAGGACCTATGAACTTTAATTCTTTTGGAGGAGGGCAGCAGTTCTATCCCAATAATAACCATGCCATGCACACTCTTTTGGCTGCACAACAGTTTCAACAGCTCCAAATTCATCCTCAGAAACAGCAGCAACATCAGTTTCAGCAACAAATACAACAACACCAACAAATACAGCAGCAACAAATGCAACAGCAACAAATGCAGCAGCAGCAGCAGGAACAACAACAACAACAATCAGGTGACTTGAAAATGAGAGCAACTACACCTCCATGCCCCAAAGATAATCCTTCATCAGATGTAAATCCTTCGGCAGCCAAGGATTGTTGA

Protein sequence

>MsaT010824.1

MEKDKSLGLGGGFPPPSGRYPGYSPTGSGFNVKSEPPSSSYPPLAPGTSSDSSGFSHDISKMSDNPPRNRGHRRAHSEILTLPDDISFDSDLGVVGGADGPSFSDDTEEDLLSMYLDMDKFNSSSATSNFQMGEGSNAAGASGLAPMSVGQTSGGGTSSGENMAVGTTNERPRIRHQHSQSMDGSTTIKPEMLISGSDDMSAADSKKAMSAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTSGLNSENSELKLRLQTMEQQVHLQDALNDALKEEITHLKVLTGQAMPPNGGPMNFNSFGGGQQFYPNNNHAMHTLLAAQQFQQLQIHPQKQQQHQFQQQIQQHQQIQQQQMQQQQMQQQQQEQQQQQSGDLKMRATTPPCPKDNPSSDVNPSAAKDC*