Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010868 | XP_003597561.2 | 73.214 | 56 | 13 | 1 | 1 | 54 | 1 | 56 | 7.01e-16 | 89.0 |
MsaG010868 | XP_003597561.2 | 94.464 | 289 | 15 | 1 | 86 | 373 | 15 | 303 | 0.0 | 521 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010868 | sp|F4IEY4|TRB5_ARATH | 40.268 | 298 | 137 | 9 | 86 | 370 | 15 | 284 | 5.68e-54 | 182 |
MsaG010868 | sp|F4IEY4|TRB5_ARATH | 63.158 | 57 | 19 | 1 | 1 | 55 | 1 | 57 | 1.25e-15 | 79.7 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010868 | tr|G7IS32|G7IS32_MEDTR | 73.214 | 56 | 13 | 1 | 1 | 54 | 1 | 56 | 3.35e-16 | 89.0 |
MsaG010868 | tr|G7IS32|G7IS32_MEDTR | 94.464 | 289 | 15 | 1 | 86 | 373 | 15 | 303 | 0.0 | 521 |
Gene ID | Type | Classification |
---|---|---|
MsaG010868 | TF | MYB-related |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG001156 | MsaG010868 | 0.803830 | 4.871651e-49 | 7.187887e-47 |
MsaG001179 | MsaG010868 | 0.828359 | 1.680462e-54 | 4.642235e-52 |
MsaG003276 | MsaG010868 | 0.804346 | 3.809077e-49 | 5.687940e-47 |
MsaG003288 | MsaG010868 | 0.818660 | 3.047348e-52 | 6.470075e-50 |
MsaG003575 | MsaG010868 | 0.868009 | 1.811534e-65 | 1.933075e-62 |
MsaG004319 | MsaG010868 | 0.836116 | 2.064656e-56 | 7.151325e-54 |
MsaG005000 | MsaG010868 | 0.804008 | 4.474594e-49 | 6.629655e-47 |
MsaG005205 | MsaG010868 | 0.816446 | 9.560171e-52 | 1.917129e-49 |
MsaG006175 | MsaG010868 | 0.810514 | 1.899172e-50 | 3.284204e-48 |
MsaG007716 | MsaG010868 | 0.801884 | 1.223732e-48 | 1.726625e-46 |
MsaG007729 | MsaG010868 | 0.837118 | 1.150438e-56 | 4.106882e-54 |
MsaG008426 | MsaG010868 | 0.832089 | 2.084654e-55 | 6.408803e-53 |
MsaG008534 | MsaG010868 | 0.815468 | 1.576749e-51 | 3.084283e-49 |
MsaG008535 | MsaG010868 | 0.815317 | 1.702730e-51 | 3.318054e-49 |
MsaG008542 | MsaG010868 | 0.806760 | 1.193511e-49 | 1.885780e-47 |
MsaG008961 | MsaG010868 | 0.815415 | 1.619610e-51 | 3.163901e-49 |
MsaG008967 | MsaG010868 | 0.805064 | 2.701110e-49 | 4.101216e-47 |
MsaG009100 | MsaG010868 | 0.806579 | 1.302736e-49 | 2.049619e-47 |
MsaG010031 | MsaG010868 | 0.837945 | 7.076258e-57 | 2.590904e-54 |
MsaG010517 | MsaG010868 | 0.817717 | 4.967810e-52 | 1.029326e-49 |
MsaG010521 | MsaG010868 | 0.829377 | 9.553596e-55 | 2.715958e-52 |
MsaG010712 | MsaG010868 | 0.813163 | 5.064544e-51 | 9.349087e-49 |
MsaG010868 | MsaG011287 | 0.822604 | 3.820685e-53 | 9.005550e-51 |
MsaG010868 | MsaG011599 | 0.803314 | 6.224943e-49 | 9.075738e-47 |
MsaG010868 | MsaG014541 | 0.806697 | 1.230463e-49 | 1.941293e-47 |
MsaG010868 | MsaG017173 | 0.830775 | 4.373740e-55 | 1.294166e-52 |
MsaG010868 | MsaG018248 | 0.802111 | 1.099740e-48 | 1.559631e-46 |
MsaG010868 | MsaG018307 | 0.813430 | 4.428916e-51 | 8.230505e-49 |
MsaG010868 | MsaG018773 | 0.827158 | 3.257375e-54 | 8.699522e-52 |
MsaG010868 | MsaG018791 | 0.814886 | 2.119960e-51 | 4.086309e-49 |
MsaG010868 | MsaG020292 | 0.806077 | 1.659978e-49 | 2.580756e-47 |
MsaG010868 | MsaG020580 | 0.802373 | 9.715812e-49 | 1.386264e-46 |
MsaG010868 | MsaG020983 | 0.822812 | 3.419068e-53 | 8.104532e-51 |
MsaG010868 | MsaG020984 | 0.838229 | 5.984933e-57 | 2.210577e-54 |
MsaG010868 | MsaG021012 | 0.811633 | 1.089561e-50 | 1.936412e-48 |
MsaG010868 | MsaG023917 | 0.802329 | 9.920110e-49 | 1.414003e-46 |
MsaG010868 | MsaG023835 | 0.814415 | 2.693052e-51 | 5.129813e-49 |
MsaG010868 | MsaG024025 | 0.807683 | 7.624026e-50 | 1.231283e-47 |
MsaG010868 | MsaG025691 | 0.807586 | 7.992845e-50 | 1.287820e-47 |
MsaG010868 | MsaG028351 | 0.812560 | 6.856169e-51 | 1.246762e-48 |
MsaG010868 | MsaG028554 | 0.830188 | 6.078737e-55 | 1.768684e-52 |
MsaG010868 | MsaG028715 | 0.804007 | 4.477998e-49 | 6.634464e-47 |
MsaG010868 | MsaG028811 | 0.805176 | 2.560458e-49 | 3.897782e-47 |
MsaG010868 | MsaG029320 | 0.803253 | 6.408798e-49 | 9.330557e-47 |
MsaG010868 | MsaG029324 | 0.830178 | 6.111421e-55 | 1.777738e-52 |
MsaG010868 | MsaG029340 | 0.804393 | 3.723541e-49 | 5.566300e-47 |
MsaG010868 | MsaG031277 | 0.824499 | 1.383247e-53 | 3.432322e-51 |
MsaG010868 | MsaG033354 | 0.813876 | 3.537234e-51 | 6.647365e-49 |
MsaG010868 | MsaG037863 | 0.829047 | 1.148137e-54 | 3.233400e-52 |
MsaG010868 | MsaG037865 | 0.833106 | 1.169105e-55 | 3.702353e-53 |
MsaG010868 | MsaG037866 | 0.839812 | 2.338218e-57 | 9.074469e-55 |
MsaG010868 | MsaG037867 | 0.833257 | 1.072898e-55 | 3.412685e-53 |
MsaG010868 | MsaG040072 | 0.830538 | 4.995936e-55 | 1.468206e-52 |
MsaG010868 | MsaG043665 | 0.802482 | 9.227885e-49 | 1.319928e-46 |
MsaG010868 | MsaG044439 | 0.821099 | 8.488190e-53 | 1.921976e-50 |
MsaG010868 | MsaG046120 | 0.800503 | 2.338479e-48 | 3.197845e-46 |
MsaG010868 | MsaG046539 | 0.804536 | 3.478803e-49 | 5.217555e-47 |
MsaG010868 | MsaG001257 | 0.837699 | 8.179907e-57 | 2.972344e-54 |
MsaG010868 | MsaG032859 | 0.804002 | 4.487571e-49 | 6.647869e-47 |
MsaG010868 | MsaG031902 | 0.802509 | 9.110915e-49 | 1.304001e-46 |
MsaG010868 | MsaG033454 | 0.830019 | 6.680212e-55 | 1.934397e-52 |
MsaG010868 | MsaG045440 | 0.868118 | 1.671443e-65 | 1.791716e-62 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010868 | MtrunA17_Chr2g0329921 | 94.464 | 289 | 15 | 1 | 86 | 373 | 15 | 303 | 0.0 | 521 |
MsaG010868 | MtrunA17_Chr2g0329921 | 73.214 | 56 | 13 | 1 | 1 | 54 | 1 | 56 | 6.44e-20 | 89.0 |
MsaG010868 | MtrunA17_Chr8g0342871 | 44.746 | 295 | 133 | 7 | 85 | 372 | 14 | 285 | 3.07e-68 | 216 |
MsaG010868 | MtrunA17_Chr8g0342871 | 56.923 | 65 | 26 | 1 | 1 | 63 | 1 | 65 | 5.82e-16 | 77.4 |
MsaG010868 | MtrunA17_Chr4g0054131 | 35.533 | 197 | 108 | 5 | 90 | 280 | 19 | 202 | 7.53e-25 | 103 |
MsaG010868 | MtrunA17_Chr4g0054131 | 64.706 | 51 | 18 | 0 | 4 | 54 | 6 | 56 | 3.50e-15 | 75.5 |
MsaG010868 | MtrunA17_Chr5g0401061 | 37.824 | 193 | 94 | 7 | 90 | 280 | 19 | 187 | 2.28e-24 | 101 |
MsaG010868 | MtrunA17_Chr5g0401061 | 64.706 | 51 | 18 | 0 | 4 | 54 | 6 | 56 | 5.81e-15 | 74.7 |
MsaG010868 | MtrunA17_Chr2g0293381 | 34.225 | 187 | 105 | 4 | 90 | 276 | 19 | 187 | 7.93e-22 | 94.4 |
MsaG010868 | MtrunA17_Chr2g0293381 | 65.385 | 52 | 18 | 0 | 4 | 55 | 6 | 57 | 6.64e-16 | 77.4 |
MsaG010868 | MtrunA17_Chr8g0384671 | 33.684 | 190 | 100 | 6 | 90 | 276 | 19 | 185 | 1.12e-21 | 94.0 |
MsaG010868 | MtrunA17_Chr8g0384671 | 51.316 | 76 | 37 | 0 | 4 | 79 | 6 | 81 | 9.25e-17 | 80.1 |
MsaG010868 | MtrunA17_Chr8g0383821 | 64.815 | 54 | 19 | 0 | 4 | 57 | 6 | 59 | 1.07e-17 | 79.0 |
MsaG010868 | MtrunA17_Chr8g0383821 | 65.000 | 40 | 14 | 0 | 90 | 129 | 19 | 58 | 9.40e-12 | 62.0 |
MsaG010868 | MtrunA17_Chr1g0166681 | 69.231 | 52 | 16 | 0 | 4 | 55 | 6 | 57 | 6.62e-17 | 78.6 |
MsaG010868 | MtrunA17_Chr1g0166681 | 67.500 | 40 | 13 | 0 | 90 | 129 | 19 | 58 | 1.95e-12 | 65.9 |
MsaG010868 | MtrunA17_Chr7g0260771 | 42.254 | 71 | 38 | 2 | 207 | 276 | 60 | 128 | 7.04e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG010868 | AT1G72740.2 | 41.837 | 294 | 132 | 9 | 86 | 370 | 15 | 278 | 1.95e-57 | 189 |
MsaG010868 | AT1G72740.2 | 63.158 | 57 | 19 | 1 | 1 | 55 | 1 | 57 | 1.28e-16 | 79.7 |
MsaG010868 | AT1G72740.1 | 40.268 | 298 | 137 | 9 | 86 | 370 | 15 | 284 | 5.78e-55 | 182 |
MsaG010868 | AT1G72740.1 | 63.158 | 57 | 19 | 1 | 1 | 55 | 1 | 57 | 1.27e-16 | 79.7 |
MsaG010868 | AT1G17520.4 | 39.249 | 293 | 150 | 5 | 86 | 370 | 15 | 287 | 1.64e-44 | 155 |
MsaG010868 | AT1G17520.4 | 61.111 | 72 | 19 | 2 | 1 | 63 | 1 | 72 | 1.05e-18 | 85.9 |
MsaG010868 | AT1G17520.3 | 38.333 | 300 | 144 | 9 | 86 | 370 | 15 | 288 | 9.17e-43 | 150 |
MsaG010868 | AT1G17520.3 | 61.111 | 72 | 19 | 2 | 1 | 63 | 1 | 72 | 1.01e-18 | 85.9 |
MsaG010868 | AT1G17520.1 | 38.796 | 299 | 149 | 6 | 86 | 370 | 15 | 293 | 9.46e-43 | 151 |
MsaG010868 | AT1G17520.1 | 61.111 | 72 | 19 | 2 | 1 | 63 | 1 | 72 | 1.00e-18 | 85.9 |
MsaG010868 | AT1G17520.2 | 38.667 | 300 | 149 | 7 | 86 | 370 | 15 | 294 | 5.98e-41 | 146 |
MsaG010868 | AT1G17520.2 | 61.111 | 72 | 19 | 2 | 1 | 63 | 1 | 72 | 1.01e-18 | 85.9 |
MsaG010868 | AT1G54260.1 | 34.694 | 196 | 85 | 5 | 211 | 370 | 6 | 194 | 1.91e-22 | 94.4 |
MsaG010868 | AT1G49950.3 | 34.555 | 191 | 103 | 4 | 90 | 280 | 19 | 187 | 1.17e-21 | 94.4 |
MsaG010868 | AT1G49950.3 | 63.462 | 52 | 19 | 0 | 4 | 55 | 6 | 57 | 1.15e-14 | 74.3 |
MsaG010868 | AT1G49950.1 | 34.555 | 191 | 103 | 4 | 90 | 280 | 19 | 187 | 1.17e-21 | 94.4 |
MsaG010868 | AT1G49950.1 | 63.462 | 52 | 19 | 0 | 4 | 55 | 6 | 57 | 1.15e-14 | 74.3 |
MsaG010868 | AT1G49950.2 | 34.555 | 191 | 103 | 4 | 90 | 280 | 19 | 187 | 1.17e-21 | 94.4 |
MsaG010868 | AT1G49950.2 | 63.462 | 52 | 19 | 0 | 4 | 55 | 6 | 57 | 1.15e-14 | 74.3 |
MsaG010868 | AT3G49850.1 | 29.947 | 187 | 111 | 4 | 90 | 276 | 19 | 185 | 8.70e-16 | 77.4 |
MsaG010868 | AT3G49850.1 | 62.745 | 51 | 19 | 0 | 5 | 55 | 7 | 57 | 2.79e-13 | 70.1 |
MsaG010868 | AT3G49850.2 | 29.947 | 187 | 111 | 4 | 90 | 276 | 19 | 185 | 8.70e-16 | 77.4 |
MsaG010868 | AT3G49850.2 | 62.745 | 51 | 19 | 0 | 5 | 55 | 7 | 57 | 2.79e-13 | 70.1 |
MsaG010868 | AT5G67580.2 | 63.462 | 52 | 19 | 0 | 4 | 55 | 6 | 57 | 6.34e-14 | 72.0 |
MsaG010868 | AT5G67580.1 | 63.462 | 52 | 19 | 0 | 4 | 55 | 6 | 57 | 6.34e-14 | 72.0 |
MsaG010868 | AT1G54240.1 | 31.638 | 177 | 95 | 8 | 213 | 370 | 57 | 226 | 1.84e-11 | 63.9 |
Find 82 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTGGCAGGTCCATTTCTTT+TGG | 0.234603 | 2:-78688199 | None:intergenic |
TGATTGTTTACCAGGATAAA+TGG | 0.237698 | 2:+78682744 | MsaT010868.1:intron |
ACAGAAAGATATTCAAAGTT+TGG | 0.268113 | 2:+78688337 | MsaT010868.1:CDS |
AGTTTCGGAAGCTTCCTTTA+TGG | 0.269510 | 2:-78688251 | None:intergenic |
ATGGCGGAATTTAACTTCTA+AGG | 0.281096 | 2:+78682763 | MsaT010868.1:CDS |
AGAAATATGGTGCTGGAAAA+TGG | 0.290469 | 2:+78683827 | MsaT010868.1:CDS |
CAGAAAGATATTCAAAGTTT+GGG | 0.300205 | 2:+78688338 | MsaT010868.1:CDS |
ACGAACCTTGAGATCAATAT+TGG | 0.326871 | 2:-78683899 | None:intergenic |
ACAGAAGAAGCGTTAGAAAA+AGG | 0.338386 | 2:+78682523 | MsaT010868.1:CDS |
TGCTGCTGCTGCTGTTGCTC+CGG | 0.341435 | 2:+78684249 | MsaT010868.1:CDS |
CATCAAGGTGTTCAGAAATA+TGG | 0.349929 | 2:+78683814 | MsaT010868.1:intron |
TGCATATGATGATGCCATAA+AGG | 0.370905 | 2:+78688237 | MsaT010868.1:CDS |
ACAAAATGGTTACAAGATAA+AGG | 0.372290 | 2:+78688129 | MsaT010868.1:CDS |
TCCTTATCATGCTGCTTCTT+CGG | 0.379902 | 2:+78682799 | MsaT010868.1:CDS |
CATCACCTGCAGGTACAAAA+TGG | 0.394363 | 2:+78688115 | MsaT010868.1:intron |
ACTCCCAAGGGTAAACCATC+TGG | 0.398706 | 2:+78684145 | MsaT010868.1:CDS |
AAGTCTGCAGGCTAGAGTTT+CGG | 0.422011 | 2:-78688266 | None:intergenic |
AGAAATACGGCGTCGGAAAG+TGG | 0.422049 | 2:+78682551 | MsaT010868.1:CDS |
ACCACCTACACCAAAAGAAA+TGG | 0.427940 | 2:+78688189 | MsaT010868.1:CDS |
GCAGAAGCAGCAGGAGTACC+AGG | 0.430652 | 2:-78684214 | None:intergenic |
TGAAGCTCTATCAACAATCA+AGG | 0.441177 | 2:+78685852 | MsaT010868.1:CDS |
GGTACTCCTGCTGCTTCTGC+TGG | 0.444786 | 2:+78684217 | MsaT010868.1:CDS |
GCGAGTATTTGACCGAGCTC+AGG | 0.447776 | 2:-78682592 | None:intergenic |
AGCATTTAAGTCAGAACCAT+TGG | 0.454179 | 2:-78685878 | None:intergenic |
GACCCAGATGGTTTACCCTT+GGG | 0.462495 | 2:-78684148 | None:intergenic |
CCTTCTCCGTCTCCTGCTCC+TGG | 0.470392 | 2:+78684196 | MsaT010868.1:CDS |
AGACCCAGATGGTTTACCCT+TGG | 0.488584 | 2:-78684149 | None:intergenic |
GGAGTAGCATTGCTTGGAGC+AGG | 0.489776 | 2:-78684175 | None:intergenic |
GGAGTACCAGCAGAAGCAGC+AGG | 0.492329 | 2:-78684223 | None:intergenic |
TTCTGAGAAGGCTGGCTAGT+AGG | 0.497538 | 2:-78684316 | None:intergenic |
CTCAAGCTCAGACTCCGATT+CGG | 0.498629 | 2:+78684290 | MsaT010868.1:CDS |
AATTATTAGATGACCCTGGC+AGG | 0.501469 | 2:-78688213 | None:intergenic |
ACCGAAGAAGCAGCATGATA+AGG | 0.505859 | 2:-78682800 | None:intergenic |
ATTATACTGAGGGTAAATCT+TGG | 0.508478 | 2:-78684353 | None:intergenic |
GCAGCAGGAGTACCAGGAGC+AGG | 0.512995 | 2:-78684208 | None:intergenic |
TGCTATTATTAGCTTCATTG+AGG | 0.513608 | 2:+78685897 | MsaT010868.1:CDS |
GCATTTAAGTCAGAACCATT+GGG | 0.513681 | 2:-78685877 | None:intergenic |
CTAGCCAATGCTACTCTACA+AGG | 0.513732 | 2:+78682860 | MsaT010868.1:CDS |
CTCCGCGTCAGCAAGTCTGC+AGG | 0.514816 | 2:-78688278 | None:intergenic |
CACTAGGTGCAAAGTTAAGA+AGG | 0.516076 | 2:+78686917 | MsaT010868.1:CDS |
CCGTTCCAATATTGATCTCA+AGG | 0.518952 | 2:+78683894 | MsaT010868.1:CDS |
GGAGAAGGAGTAGCATTGCT+TGG | 0.518958 | 2:-78684181 | None:intergenic |
GGTGTAGCAGCAACATTGAC+CGG | 0.528722 | 2:-78684268 | None:intergenic |
CTCCCAAGGGTAAACCATCT+GGG | 0.529021 | 2:+78684146 | MsaT010868.1:CDS |
CCAAAAGAAATGGACCTGCC+AGG | 0.529549 | 2:+78688199 | MsaT010868.1:CDS |
AACAACCTTGAGATCAGTGT+TGG | 0.530301 | 2:-78682623 | None:intergenic |
CAAAATTTCAGAAGGACACT+AGG | 0.531519 | 2:+78686901 | MsaT010868.1:CDS |
GAAATACGGCGTCGGAAAGT+GGG | 0.534166 | 2:+78682552 | MsaT010868.1:CDS |
TTTGGCTACTGCAGCAGTCA+GGG | 0.538485 | 2:+78688312 | MsaT010868.1:CDS |
CAGTCAAGGGAAACTTGAAA+AGG | 0.538946 | 2:+78686945 | MsaT010868.1:CDS |
AACACCTTGTAGAGTAGCAT+TGG | 0.543073 | 2:-78682864 | None:intergenic |
CTCAAAGTCAAAATTTCAGA+AGG | 0.543098 | 2:+78686893 | MsaT010868.1:CDS |
AAGATAAAGGACACCTCAGT+GGG | 0.554986 | 2:+78688142 | MsaT010868.1:CDS |
GGAGTACCAGGAGCAGGAGA+CGG | 0.555301 | 2:-78684202 | None:intergenic |
AAGAGATGGGAAATCAAAAG+TGG | 0.558180 | 2:+78682491 | None:intergenic |
TTAAGAAGGCTTGTCAGTCA+AGG | 0.558246 | 2:+78686931 | MsaT010868.1:CDS |
GGTGTTCAGAAATATGGTGC+TGG | 0.564792 | 2:+78683820 | MsaT010868.1:intron |
CCAGGAGCAGGAGACGGAGA+AGG | 0.566651 | 2:-78684196 | None:intergenic |
TAAGAAGGCTTGTCAGTCAA+GGG | 0.572247 | 2:+78686932 | MsaT010868.1:CDS |
TGTCATCATTCTGAGAAGGC+TGG | 0.574703 | 2:-78684324 | None:intergenic |
CGAATCGGAGTCTGAGCTTG+AGG | 0.575521 | 2:-78684289 | None:intergenic |
CGAGTATTTGACCGAGCTCA+GGG | 0.577095 | 2:-78682591 | None:intergenic |
TCGTTCCAACACTGATCTCA+AGG | 0.583235 | 2:+78682618 | MsaT010868.1:CDS |
CAAAAGAAATGGACCTGCCA+GGG | 0.589349 | 2:+78688200 | MsaT010868.1:CDS |
GCATTGGCTAGAGCTAGAGC+AGG | 0.593031 | 2:-78682848 | None:intergenic |
TCAAAACCCTAAAACTCCCA+AGG | 0.596857 | 2:+78684132 | MsaT010868.1:CDS |
TCTGTGATGGCAGGTATGCT+CGG | 0.596964 | 2:+78688496 | MsaT010868.1:intron |
TGGCTAGTAGGAGTCCGAAT+CGG | 0.600441 | 2:-78684304 | None:intergenic |
AAGATATTCAAAGTTTGGGG+AGG | 0.610909 | 2:+78688342 | MsaT010868.1:CDS |
GCATTGTCATCATTCTGAGA+AGG | 0.619580 | 2:-78684328 | None:intergenic |
AGCCTGCAGACTTGCTGACG+CGG | 0.625031 | 2:+78688276 | MsaT010868.1:CDS |
AGAAAGATATTCAAAGTTTG+GGG | 0.625477 | 2:+78688339 | MsaT010868.1:CDS |
GCAAAATTATTAGATGACCC+TGG | 0.640236 | 2:-78688217 | None:intergenic |
CCTTGAGATCAATATTGGAA+CGG | 0.643002 | 2:-78683894 | None:intergenic |
CAAAACCCTAAAACTCCCAA+GGG | 0.647393 | 2:+78684133 | MsaT010868.1:CDS |
TCAACAATCAAGGATCCCAA+TGG | 0.653809 | 2:+78685862 | MsaT010868.1:CDS |
GGTGTCAAGAAATACGGCGT+CGG | 0.659365 | 2:+78682544 | MsaT010868.1:CDS |
TTGTTTACCAGGATAAATGG+CGG | 0.659616 | 2:+78682747 | MsaT010868.1:intron |
GGAGCAGGAGAAGACCCAGA+TGG | 0.666811 | 2:-78684160 | None:intergenic |
GATAAAGGACACCTCAGTGG+GGG | 0.678712 | 2:+78688144 | MsaT010868.1:CDS |
CAAGATAAAGGACACCTCAG+TGG | 0.681785 | 2:+78688141 | MsaT010868.1:CDS |
AGATAAAGGACACCTCAGTG+GGG | 0.739882 | 2:+78688143 | MsaT010868.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 78682496 | 78688540 | 78682496 | ID=MsaG010868 |
Chr2 | mRNA | 78682496 | 78688540 | 78682496 | ID=MsaT010868.1;Parent=MsaG010868 |
Chr2 | exon | 78682496 | 78682639 | 78682496 | ID=MsaT010868.1.exon1;Parent=MsaT010868.1 |
Chr2 | CDS | 78682496 | 78682639 | 78682496 | ID=cds.MsaT010868.1;Parent=MsaT010868.1 |
Chr2 | exon | 78682758 | 78682881 | 78682758 | ID=MsaT010868.1.exon2;Parent=MsaT010868.1 |
Chr2 | CDS | 78682758 | 78682881 | 78682758 | ID=cds.MsaT010868.1;Parent=MsaT010868.1 |
Chr2 | exon | 78683821 | 78683915 | 78683821 | ID=MsaT010868.1.exon3;Parent=MsaT010868.1 |
Chr2 | CDS | 78683821 | 78683915 | 78683821 | ID=cds.MsaT010868.1;Parent=MsaT010868.1 |
Chr2 | exon | 78684100 | 78684368 | 78684100 | ID=MsaT010868.1.exon4;Parent=MsaT010868.1 |
Chr2 | CDS | 78684100 | 78684368 | 78684100 | ID=cds.MsaT010868.1;Parent=MsaT010868.1 |
Chr2 | exon | 78685834 | 78685918 | 78685834 | ID=MsaT010868.1.exon5;Parent=MsaT010868.1 |
Chr2 | CDS | 78685834 | 78685918 | 78685834 | ID=cds.MsaT010868.1;Parent=MsaT010868.1 |
Chr2 | exon | 78686877 | 78686966 | 78686877 | ID=MsaT010868.1.exon6;Parent=MsaT010868.1 |
Chr2 | CDS | 78686877 | 78686966 | 78686877 | ID=cds.MsaT010868.1;Parent=MsaT010868.1 |
Chr2 | exon | 78688127 | 78688409 | 78688127 | ID=MsaT010868.1.exon7;Parent=MsaT010868.1 |
Chr2 | CDS | 78688127 | 78688409 | 78688127 | ID=cds.MsaT010868.1;Parent=MsaT010868.1 |
Chr2 | exon | 78688509 | 78688540 | 78688509 | ID=MsaT010868.1.exon8;Parent=MsaT010868.1 |
Chr2 | CDS | 78688509 | 78688540 | 78688509 | ID=cds.MsaT010868.1;Parent=MsaT010868.1 |
Gene Sequence |
Protein sequence |