AlfalfaGEDB | MsaG010868

M. sativa ssp. caerulea / MsaG010868

KEGG: K09422
GO: GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010868	XP_003597561.2	73.214	56	13	1	1	54	1	56	7.01e-16	89.0
MsaG010868	XP_003597561.2	94.464	289	15	1	86	373	15	303	0.0	521

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010868	sp\|F4IEY4\|TRB5_ARATH	40.268	298	137	9	86	370	15	284	5.68e-54	182
MsaG010868	sp\|F4IEY4\|TRB5_ARATH	63.158	57	19	1	1	55	1	57	1.25e-15	79.7

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010868	tr\|G7IS32\|G7IS32_MEDTR	73.214	56	13	1	1	54	1	56	3.35e-16	89.0
MsaG010868	tr\|G7IS32\|G7IS32_MEDTR	94.464	289	15	1	86	373	15	303	0.0	521

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG010868	TF	MYB-related

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001156	MsaG010868	0.803830	4.871651e-49	7.187887e-47
MsaG001179	MsaG010868	0.828359	1.680462e-54	4.642235e-52
MsaG003276	MsaG010868	0.804346	3.809077e-49	5.687940e-47
MsaG003288	MsaG010868	0.818660	3.047348e-52	6.470075e-50
MsaG003575	MsaG010868	0.868009	1.811534e-65	1.933075e-62
MsaG004319	MsaG010868	0.836116	2.064656e-56	7.151325e-54
MsaG005000	MsaG010868	0.804008	4.474594e-49	6.629655e-47
MsaG005205	MsaG010868	0.816446	9.560171e-52	1.917129e-49
MsaG006175	MsaG010868	0.810514	1.899172e-50	3.284204e-48
MsaG007716	MsaG010868	0.801884	1.223732e-48	1.726625e-46

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010868	MtrunA17_Chr2g0329921	94.464	289	15	1	86	373	15	303	0.0	521
MsaG010868	MtrunA17_Chr2g0329921	73.214	56	13	1	1	54	1	56	6.44e-20	89.0
MsaG010868	MtrunA17_Chr8g0342871	44.746	295	133	7	85	372	14	285	3.07e-68	216
MsaG010868	MtrunA17_Chr8g0342871	56.923	65	26	1	1	63	1	65	5.82e-16	77.4
MsaG010868	MtrunA17_Chr4g0054131	35.533	197	108	5	90	280	19	202	7.53e-25	103
MsaG010868	MtrunA17_Chr4g0054131	64.706	51	18	0	4	54	6	56	3.50e-15	75.5
MsaG010868	MtrunA17_Chr5g0401061	37.824	193	94	7	90	280	19	187	2.28e-24	101
MsaG010868	MtrunA17_Chr5g0401061	64.706	51	18	0	4	54	6	56	5.81e-15	74.7
MsaG010868	MtrunA17_Chr2g0293381	34.225	187	105	4	90	276	19	187	7.93e-22	94.4
MsaG010868	MtrunA17_Chr2g0293381	65.385	52	18	0	4	55	6	57	6.64e-16	77.4

Showing 1 to 10 of 17 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010868	AT1G72740.2	41.837	294	132	9	86	370	15	278	1.95e-57	189
MsaG010868	AT1G72740.2	63.158	57	19	1	1	55	1	57	1.28e-16	79.7
MsaG010868	AT1G72740.1	40.268	298	137	9	86	370	15	284	5.78e-55	182
MsaG010868	AT1G72740.1	63.158	57	19	1	1	55	1	57	1.27e-16	79.7
MsaG010868	AT1G17520.4	39.249	293	150	5	86	370	15	287	1.64e-44	155
MsaG010868	AT1G17520.4	61.111	72	19	2	1	63	1	72	1.05e-18	85.9
MsaG010868	AT1G17520.3	38.333	300	144	9	86	370	15	288	9.17e-43	150
MsaG010868	AT1G17520.3	61.111	72	19	2	1	63	1	72	1.01e-18	85.9
MsaG010868	AT1G17520.1	38.796	299	149	6	86	370	15	293	9.46e-43	151
MsaG010868	AT1G17520.1	61.111	72	19	2	1	63	1	72	1.00e-18	85.9

Showing 1 to 10 of 26 entries

Previous1 2 3Next

Find 82 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAACCTTGAGATCAGTGT+TGG	0.530301	2:-78682623	None:intergenic
AACACCTTGTAGAGTAGCAT+TGG	0.543073	2:-78682864	None:intergenic
AAGAGATGGGAAATCAAAAG+TGG	0.558180	2:+78682491	None:intergenic
AAGATAAAGGACACCTCAGT+GGG	0.554986	2:+78688142	MsaT010868.1:CDS
AAGATATTCAAAGTTTGGGG+AGG	0.610909	2:+78688342	MsaT010868.1:CDS
AAGTCTGCAGGCTAGAGTTT+CGG	0.422011	2:-78688266	None:intergenic
AATTATTAGATGACCCTGGC+AGG	0.501469	2:-78688213	None:intergenic
ACAAAATGGTTACAAGATAA+AGG	0.372290	2:+78688129	MsaT010868.1:CDS
ACAGAAAGATATTCAAAGTT+TGG	0.268113	2:+78688337	MsaT010868.1:CDS
ACAGAAGAAGCGTTAGAAAA+AGG	0.338386	2:+78682523	MsaT010868.1:CDS

Showing 1 to 10 of 82 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	78682496	78688540	78682496	ID=MsaG010868
Chr2	mRNA	78682496	78688540	78682496	ID=MsaT010868.1;Parent=MsaG010868
Chr2	exon	78682496	78682639	78682496	ID=MsaT010868.1.exon1;Parent=MsaT010868.1
Chr2	CDS	78682496	78682639	78682496	ID=cds.MsaT010868.1;Parent=MsaT010868.1
Chr2	exon	78682758	78682881	78682758	ID=MsaT010868.1.exon2;Parent=MsaT010868.1
Chr2	CDS	78682758	78682881	78682758	ID=cds.MsaT010868.1;Parent=MsaT010868.1
Chr2	exon	78683821	78683915	78683821	ID=MsaT010868.1.exon3;Parent=MsaT010868.1
Chr2	CDS	78683821	78683915	78683821	ID=cds.MsaT010868.1;Parent=MsaT010868.1
Chr2	exon	78684100	78684368	78684100	ID=MsaT010868.1.exon4;Parent=MsaT010868.1
Chr2	CDS	78684100	78684368	78684100	ID=cds.MsaT010868.1;Parent=MsaT010868.1
Chr2	exon	78685834	78685918	78685834	ID=MsaT010868.1.exon5;Parent=MsaT010868.1
Chr2	CDS	78685834	78685918	78685834	ID=cds.MsaT010868.1;Parent=MsaT010868.1
Chr2	exon	78686877	78686966	78686877	ID=MsaT010868.1.exon6;Parent=MsaT010868.1
Chr2	CDS	78686877	78686966	78686877	ID=cds.MsaT010868.1;Parent=MsaT010868.1
Chr2	exon	78688127	78688409	78688127	ID=MsaT010868.1.exon7;Parent=MsaT010868.1
Chr2	CDS	78688127	78688409	78688127	ID=cds.MsaT010868.1;Parent=MsaT010868.1
Chr2	exon	78688509	78688540	78688509	ID=MsaT010868.1.exon8;Parent=MsaT010868.1
Chr2	CDS	78688509	78688540	78688509	ID=cds.MsaT010868.1;Parent=MsaT010868.1

Gene Sequence

>MsaT010868.1

ATGGGAAATCAAAAGTGGACATCTGAAACAGAAGAAGCGTTAGAAAAAGGTGTCAAGAAATACGGCGTCGGAAAGTGGGCAGATATTTTGAAAGACCCTGAGCTCGGTCAAATACTCGCTAGTCGTTCCAACACTGATCTCAAGGATAAATGGCGGAATTTAACTTCTAAGGACAAATCATTTGTTCCTTATCATGCTGCTTCTTCGGTCAATGTTGCTTTGTCTCATGTTGTTCCTGCTCTAGCTCTAGCCAATGCTACTCTACAAGGTGTTCAGAAATATGGTGCTGGAAAATGGAAGCACATTCTCAAAGACCCTCAATTCAGTCAAAAACTCGCTAGCCGTTCCAATATTGATCTCAAGGATAAATGGCGGAATTTGAATGTTTTTCCTGGTCAAAACCCTAAAACTCCCAAGGGTAAACCATCTGGGTCTTCTCCTGCTCCAAGCAATGCTACTCCTTCTCCGTCTCCTGCTCCTGGTACTCCTGCTGCTTCTGCTGGTACTCCTGCTGCTGCTGCTGCTGTTGCTCCGGTCAATGTTGCTGCTACACCTCAAGCTCAGACTCCGATTCGGACTCCTACTAGCCAGCCTTCTCAGAATGATGACAATGCTGCCAAGATTTACCCTCAGTACAATTCATTGGTTTTTGAAGCTCTATCAACAATCAAGGATCCCAATGGTTCTGACTTAAATGCTATTATTAGCTTCATTGAGCAAAAGCACAACTTGCCTCAAAGTCAAAATTTCAGAAGGACACTAGGTGCAAAGTTAAGAAGGCTTGTCAGTCAAGGGAAACTTGAAAAGGTACAAAATGGTTACAAGATAAAGGACACCTCAGTGGGGGTGAAGTTAGCTGATGACTCAAAACCACCTACACCAAAAGAAATGGACCTGCCAGGGTCATCTAATAATTTTGCATATGATGATGCCATAAAGGAAGCTTCCGAAACTCTAGCCTGCAGACTTGCTGACGCGGAGAATAAGTCATTTTTGGCTACTGCAGCAGTCAGGGAGACAGAAAGATATTCAAAGTTTGGGGAGGAAAATGATGCAATGTTAAAGATTGCAGAAGAGATTTATGCAAAATGTATGCTCGGTGAAACTGTTCGCTTCACTTAA

Protein sequence

>MsaT010868.1

MGNQKWTSETEEALEKGVKKYGVGKWADILKDPELGQILASRSNTDLKDKWRNLTSKDKSFVPYHAASSVNVALSHVVPALALANATLQGVQKYGAGKWKHILKDPQFSQKLASRSNIDLKDKWRNLNVFPGQNPKTPKGKPSGSSPAPSNATPSPSPAPGTPAASAGTPAAAAAVAPVNVAATPQAQTPIRTPTSQPSQNDDNAAKIYPQYNSLVFEALSTIKDPNGSDLNAIISFIEQKHNLPQSQNFRRTLGAKLRRLVSQGKLEKVQNGYKIKDTSVGVKLADDSKPPTPKEMDLPGSSNNFAYDDAIKEASETLACRLADAENKSFLATAAVRETERYSKFGEENDAMLKIAEEIYAKCMLGETVRFT*